Wall clock time and date at job start Tue Mar 31 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00000 * 2 1 4 4 O 1.21280 * 120.00001 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00058 * 359.97438 * 3 2 1 6 6 H 1.09003 * 115.55947 * 34.28075 * 5 3 2 7 7 C 1.53092 * 117.50951 * 248.50195 * 5 3 2 8 8 C 1.52557 * 117.51210 * 180.02562 * 5 3 2 9 9 C 1.53873 * 120.82341 * 357.24313 * 8 5 3 10 10 C 1.54986 * 104.06574 * 192.36808 * 9 8 5 11 11 C 1.54920 * 102.81806 * 37.56986 * 10 9 8 12 12 C 1.53480 * 121.09054 * 217.88312 * 8 5 3 13 13 C 1.46501 * 119.99924 * 179.97438 * 2 1 3 14 14 C 1.53509 * 114.17288 * 300.00458 * 13 2 1 15 15 N 1.47486 * 87.93224 * 87.62418 * 14 13 2 16 16 C 1.46899 * 111.00363 * 138.70028 * 15 14 13 17 17 C 1.50698 * 109.46987 * 169.99692 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47425 * 90.00231 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00087 * 24 22 20 27 27 H 1.48505 * 109.47256 * 330.00093 * 24 22 20 28 28 C 1.47486 * 87.83726 * 27.00669 * 15 14 13 29 29 H 1.08993 * 109.47278 * 270.00248 * 1 2 3 30 30 H 1.09002 * 109.46849 * 30.00505 * 1 2 3 31 31 H 1.09007 * 109.46951 * 150.00069 * 1 2 3 32 32 H 1.08998 * 117.50842 * 359.97438 * 7 5 3 33 33 H 1.08998 * 117.51303 * 145.08703 * 7 5 3 34 34 H 1.09000 * 110.51311 * 311.01934 * 9 8 5 35 35 H 1.09001 * 110.50592 * 73.72193 * 9 8 5 36 36 H 1.08995 * 110.74084 * 279.23348 * 10 9 8 37 37 H 1.08996 * 110.89671 * 155.97288 * 10 9 8 38 38 H 1.09001 * 110.48022 * 203.59082 * 11 10 9 39 39 H 1.08998 * 110.59821 * 81.01948 * 11 10 9 40 40 H 1.09000 * 110.07007 * 263.30221 * 12 8 5 41 41 H 1.09009 * 110.06964 * 24.77807 * 12 8 5 42 42 H 1.08999 * 113.37924 * 166.92158 * 13 2 1 43 43 H 1.08995 * 113.48184 * 332.85785 * 14 13 2 44 44 H 1.09001 * 113.47305 * 202.38523 * 14 13 2 45 45 H 1.09003 * 109.46477 * 50.00182 * 16 15 14 46 46 H 1.08993 * 109.47002 * 290.00508 * 16 15 14 47 47 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 49 49 H 1.08998 * 113.47192 * 87.75755 * 28 15 14 50 50 H 1.08994 * 113.47979 * 218.22257 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.4464 2.4734 0.5529 7 6 1.4633 3.3332 -1.2641 8 6 2.2048 3.7591 -0.0012 9 6 3.7416 3.7152 0.0624 10 6 4.1481 5.1803 0.3628 11 6 3.0419 5.6505 1.3401 12 6 1.7555 4.9851 0.8054 13 6 2.1975 -1.2687 0.0006 14 6 1.9053 -2.1628 1.2138 15 7 0.7723 -2.7277 0.4572 16 6 0.6877 -4.1824 0.6437 17 6 -0.6088 -4.6883 0.0657 18 8 -1.3857 -3.9134 -0.4512 19 7 -0.9045 -6.0020 0.1222 20 6 -2.0866 -6.4616 -0.3986 21 1 -2.7787 -5.7715 -0.8581 22 6 -2.3941 -7.8152 -0.3352 23 7 -1.5521 -8.6547 0.2244 24 14 -4.0043 -8.4414 -1.0454 25 1 -3.8076 -8.8070 -2.4711 26 1 -4.4492 -9.6367 -0.2848 27 1 -5.0364 -7.3783 -0.9449 28 6 1.5044 -2.3950 -0.7791 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 2.0598 2.9556 -2.0946 33 1 0.5752 3.9008 -1.5422 34 1 4.0720 3.0550 0.8644 35 1 4.1543 3.3926 -0.8935 36 1 4.1380 5.7783 -0.5485 37 1 5.1275 5.2221 0.8393 38 1 2.9480 6.7362 1.3161 39 1 3.2549 5.3094 2.3532 40 1 1.2153 5.6791 0.1613 41 1 1.1211 4.6747 1.6357 42 1 3.2578 -1.1562 -0.2259 43 1 1.6011 -1.6062 2.1002 44 1 2.6938 -2.8866 1.4197 45 1 0.7264 -4.4150 1.7079 46 1 1.5240 -4.6629 0.1360 47 1 -0.2830 -6.6218 0.5352 48 1 -1.7666 -9.5997 0.2683 49 1 2.1859 -3.1807 -1.1049 50 1 0.8605 -2.0352 -1.5816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733315897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:57 Heat of formation + Delta-G solvation = -22.686232 kcal Electronic energy + Delta-G solvation = -28990.560034 eV Core-core repulsion = 25018.955646 eV Total energy + Delta-G solvation = -3971.604388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05139 -40.95516 -39.71851 -38.76769 -36.04563 -35.77494 -35.01916 -33.27475 -31.44195 -29.57942 -28.14027 -27.50845 -26.88857 -26.60001 -25.57252 -24.35094 -21.57603 -21.49353 -21.09050 -19.91602 -19.82218 -19.37036 -18.29768 -17.80156 -17.21680 -16.90344 -16.57234 -16.43805 -16.22088 -16.13210 -15.88279 -15.53640 -15.18172 -14.78451 -14.61845 -14.28798 -14.15668 -13.79888 -13.71648 -13.49807 -13.39239 -13.26089 -13.11573 -12.99554 -12.87937 -12.61621 -12.42193 -12.18646 -12.05770 -11.97746 -11.94735 -11.91395 -11.72661 -11.48760 -11.38375 -11.25453 -10.85998 -10.46618 -10.34852 -9.99989 -9.75153 -9.63016 -8.46127 -5.94542 1.37657 1.41236 1.43699 1.53850 1.88284 2.07384 2.28531 2.78859 2.80747 3.20234 3.34504 3.36518 3.46902 3.64381 3.75527 3.78960 3.94284 3.97324 4.14432 4.25802 4.30472 4.33003 4.34497 4.41589 4.43280 4.52302 4.59350 4.62831 4.68148 4.76119 4.77759 4.81034 4.82025 4.89164 4.93560 5.03939 5.08772 5.13590 5.13989 5.25237 5.29481 5.36495 5.41264 5.45685 5.52203 5.57673 5.84887 6.06221 6.41811 6.61536 7.14004 7.14776 7.58101 8.14163 8.71315 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033228 B = 0.001923 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.448964 B =14554.483908 C =15015.978046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.587 5.587 3 C 0.541 3.459 4 O -0.569 6.569 5 C -0.190 4.190 6 H 0.139 0.861 7 C -0.129 4.129 8 C -0.098 4.098 9 C -0.076 4.076 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.087 4.087 13 C 0.122 3.878 14 C -0.006 4.006 15 N -0.461 5.461 16 C 0.020 3.980 17 C 0.445 3.555 18 O -0.615 6.615 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 C -0.005 4.005 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.093 0.907 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 24.526 1.766 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.317 5.317 3 C 0.331 3.669 4 O -0.449 6.449 5 C -0.211 4.211 6 H 0.157 0.843 7 C -0.166 4.166 8 C -0.098 4.098 9 C -0.113 4.113 10 C -0.162 4.162 11 C -0.159 4.159 12 C -0.124 4.124 13 C 0.016 3.984 14 C -0.136 4.136 15 N -0.183 5.183 16 C -0.112 4.112 17 C 0.232 3.768 18 O -0.501 6.501 19 N -0.215 5.215 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.111 0.889 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.748 25.034 1.578 26.911 hybrid contribution 0.128 -1.919 -0.170 1.931 sum 9.877 23.115 1.408 25.176 Atomic orbital electron populations 1.21822 0.77622 1.03658 1.02402 1.47463 1.07816 1.04373 1.72067 1.20195 0.87081 0.84942 0.74657 1.90647 1.15035 1.87605 1.51605 1.22347 1.02658 0.89025 1.07022 0.84304 1.23107 1.03251 1.00165 0.90073 1.21895 0.94544 0.93364 1.00017 1.21762 0.92029 0.96531 1.01005 1.22546 0.98717 0.95209 0.99742 1.22349 0.94173 1.00705 0.98652 1.21707 0.97955 0.93927 0.98794 1.21962 0.96887 0.82976 0.96566 1.24352 0.93451 0.97652 0.98169 1.68841 1.34100 1.10218 1.05172 1.22398 0.94984 0.91074 1.02720 1.20732 0.89901 0.82141 0.84044 1.90475 1.53046 1.56390 1.50160 1.41958 1.19354 1.06964 1.53245 1.19643 0.97371 0.92764 1.36276 0.90375 1.26025 1.02479 0.95466 0.97434 1.69673 1.37702 1.04322 1.44563 0.84940 0.77460 0.77736 0.78282 1.19693 1.19614 1.19785 1.24311 0.96392 0.97549 0.95229 0.92545 0.89523 0.91028 0.89290 0.85296 0.92471 0.93254 0.90892 0.91445 0.90046 0.91940 0.89708 0.91037 0.86769 0.89567 0.88129 0.87540 0.89744 0.77106 0.91389 0.88856 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.05 9.10 127.77 1.16 3.21 16 2 N -0.59 -14.39 3.11 -821.60 -2.56 -16.95 16 3 C 0.54 13.46 7.45 87.66 0.65 14.12 16 4 O -0.57 -17.17 13.22 -3.03 -0.04 -17.21 16 5 C -0.19 -3.49 4.67 -11.66 -0.05 -3.55 16 6 H 0.14 2.10 7.26 -2.39 -0.02 2.09 16 7 C -0.13 -1.97 9.94 30.47 0.30 -1.67 16 8 C -0.10 -1.64 2.44 -52.03 -0.13 -1.77 16 9 C -0.08 -1.51 4.77 31.57 0.15 -1.36 16 10 C -0.12 -1.80 6.91 31.93 0.22 -1.58 16 11 C -0.12 -1.46 6.84 31.72 0.22 -1.25 16 12 C -0.09 -1.07 6.54 31.22 0.20 -0.86 16 13 C 0.12 2.99 4.66 45.45 0.21 3.20 16 14 C -0.01 -0.15 7.31 83.58 0.61 0.46 16 15 N -0.46 -14.13 4.40 -932.39 -4.10 -18.24 16 16 C 0.02 0.66 5.30 85.56 0.45 1.12 16 17 C 0.44 20.93 7.85 87.66 0.69 21.62 16 18 O -0.62 -33.72 16.01 -3.07 -0.05 -33.77 16 19 N -0.58 -29.49 5.29 -306.98 -1.62 -31.11 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 24 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C -0.01 -0.14 6.73 83.58 0.56 0.42 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.59 6.64 -2.39 -0.02 1.58 16 31 H 0.07 2.14 5.68 -2.38 -0.01 2.13 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.42 6.97 -2.39 -0.02 1.40 16 35 H 0.05 1.12 8.00 -2.39 -0.02 1.10 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.11 2.79 7.29 -2.39 -0.02 2.77 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.10 1.93 7.91 -2.39 -0.02 1.91 16 45 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 46 H 0.08 2.42 7.30 -2.39 -0.02 2.40 16 47 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 49 H 0.09 2.28 7.42 -2.39 -0.02 2.26 16 50 H 0.07 2.29 7.25 -2.39 -0.02 2.27 16 Total: -1.00 -70.36 396.24 0.69 -69.67 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: 0.21 Total: 38.23 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.54 Total: 13.84 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -8.00 Total: -115.73 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.98 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.36 0.69 -69.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733315897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.981 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds