Wall clock time and date at job start Tue Mar 31 2020 18:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99926 * 2 1 4 4 C 1.50696 * 109.47129 * 66.04546 * 3 2 1 5 5 O 1.21295 * 120.00206 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00101 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99854 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00393 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99838 * 180.02562 * 7 6 4 10 10 N 1.31417 * 120.00066 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00207 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46704 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47175 * 119.99728 * 11 9 7 14 14 H 1.48498 * 109.46956 * 239.99962 * 11 9 7 15 15 C 1.46898 * 110.99778 * 236.05071 * 2 1 3 16 16 C 1.53003 * 109.47121 * 293.94847 * 15 2 1 17 17 H 1.09005 * 109.99585 * 66.09735 * 16 15 2 18 18 C 1.54316 * 109.77680 * 187.25357 * 16 15 2 19 19 C 1.55156 * 102.86242 * 141.88846 * 18 16 15 20 20 C 1.54916 * 101.58057 * 324.30307 * 19 18 16 21 21 N 1.47017 * 109.88459 * 305.00547 * 16 15 2 22 22 C 1.34779 * 125.64781 * 61.67180 * 21 16 15 23 23 O 1.21612 * 120.00131 * 359.71960 * 22 21 16 24 24 C 1.47101 * 120.00164 * 179.71897 * 22 21 16 25 25 C 1.32613 * 124.62364 * 180.02562 * 24 22 21 26 26 C 1.51116 * 110.75931 * 179.97438 * 25 24 22 27 27 C 1.54577 * 104.83929 * 16.59621 * 26 25 24 28 28 C 1.51118 * 124.61887 * 0.02562 * 24 22 21 29 29 H 1.08994 * 109.47269 * 183.95184 * 1 2 3 30 30 H 1.08997 * 109.46849 * 303.95230 * 1 2 3 31 31 H 1.08997 * 109.46993 * 63.95156 * 1 2 3 32 32 H 1.08998 * 109.47423 * 186.04793 * 3 2 1 33 33 H 1.09000 * 109.47081 * 306.04566 * 3 2 1 34 34 H 0.96993 * 120.00151 * 0.02562 * 6 4 3 35 35 H 0.96997 * 119.99542 * 180.02562 * 10 9 7 36 36 H 1.09007 * 109.47227 * 173.95419 * 15 2 1 37 37 H 1.08998 * 109.47450 * 53.95358 * 15 2 1 38 38 H 1.09002 * 110.92210 * 23.47610 * 18 16 15 39 39 H 1.08996 * 110.74017 * 260.22006 * 18 16 15 40 40 H 1.08996 * 111.00115 * 206.23085 * 19 18 16 41 41 H 1.08995 * 111.03702 * 82.39167 * 19 18 16 42 42 H 1.09000 * 110.36676 * 278.17031 * 20 19 18 43 43 H 1.08998 * 110.45723 * 155.89450 * 20 19 18 44 44 H 1.07998 * 124.61790 * 359.95519 * 25 24 22 45 45 H 1.08998 * 110.36323 * 257.75471 * 26 25 24 46 46 H 1.08997 * 110.36208 * 135.43812 * 26 25 24 47 47 H 1.09004 * 110.98332 * 93.07560 * 27 26 25 48 48 H 1.09001 * 110.98217 * 216.83188 * 27 26 25 49 49 H 1.08997 * 110.36305 * 44.58196 * 28 24 22 50 50 H 1.09001 * 110.36780 * 282.26187 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0188 3.3199 1.5237 7 6 1.6931 3.9343 2.7052 8 1 1.1301 3.3987 3.4552 9 6 2.0864 5.2467 2.9372 10 7 2.7711 5.8986 2.0244 11 14 1.6420 6.0843 4.5467 12 1 0.8738 5.1420 5.3994 13 1 2.8836 6.4913 5.2523 14 1 0.8147 7.2855 4.2676 15 6 1.9954 -0.7659 -1.1376 16 6 1.6315 -2.2426 -0.9704 17 1 0.5512 -2.3704 -1.0394 18 6 2.3324 -3.0798 -2.0609 19 6 2.7295 -4.3732 -1.3015 20 6 3.0833 -3.8149 0.0996 21 7 2.1106 -2.7314 0.3306 22 6 1.7210 -2.2694 1.5353 23 8 0.9082 -1.3676 1.6069 24 6 2.2788 -2.8560 2.7636 25 6 1.9608 -2.4735 3.9930 26 6 2.7170 -3.2855 5.0189 27 6 3.8705 -3.9455 4.2294 28 6 3.2922 -3.9765 2.7965 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4513 -0.9233 32 1 3.0797 1.3445 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.5242 3.8011 0.8500 35 1 3.0459 6.8146 2.1866 36 1 3.0797 -0.6610 -1.1757 37 1 1.5611 -0.3871 -2.0628 38 1 3.2172 -2.5664 -2.4372 39 1 1.6443 -3.3066 -2.8753 40 1 3.5957 -4.8470 -1.7633 41 1 1.8909 -5.0670 -1.2452 42 1 4.0993 -3.4202 0.1053 43 1 2.9741 -4.5906 0.8575 44 1 1.2576 -1.6885 4.2288 45 1 2.0691 -4.0475 5.4520 46 1 3.1141 -2.6360 5.7989 47 1 4.7725 -3.3351 4.2728 48 1 4.0662 -4.9539 4.5942 49 1 4.0802 -3.7967 2.0652 50 1 2.8064 -4.9331 2.6045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733927534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:39 Heat of formation + Delta-G solvation = -2.179947 kcal Electronic energy + Delta-G solvation = -30849.923063 eV Core-core repulsion = 26879.207894 eV Total energy + Delta-G solvation = -3970.715169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.28746 -38.47311 -37.94635 -36.67397 -35.74747 -33.63186 -31.64463 -31.05257 -30.42913 -29.10828 -28.20381 -27.49278 -25.96532 -24.62089 -23.63687 -21.64832 -21.45899 -20.90817 -19.45866 -18.89455 -18.05461 -17.65100 -16.61853 -16.49283 -15.87831 -15.62432 -15.17834 -14.80063 -14.55593 -14.30824 -14.03352 -13.84034 -13.75484 -13.36330 -13.22990 -12.89762 -12.74641 -12.56557 -12.28945 -12.07348 -11.88701 -11.73502 -11.66450 -11.47159 -11.46388 -11.26687 -11.26272 -11.14690 -11.02211 -10.96650 -10.71108 -10.62054 -10.53109 -10.24683 -10.08057 -9.30480 -8.85889 -8.73127 -8.36327 -7.98717 -7.76506 -7.28048 -6.26967 -3.66274 1.79892 3.24988 3.28543 3.33952 3.41942 3.90218 4.13999 4.17567 4.35002 4.40490 4.55829 4.61037 4.73542 4.78711 4.93754 5.04765 5.16419 5.27239 5.31754 5.37426 5.40239 5.44045 5.50589 5.57223 5.60258 5.63582 5.66186 5.69415 5.74524 5.78379 5.83096 5.93573 5.94135 5.97061 6.03444 6.11658 6.17815 6.27819 6.35290 6.48719 6.53730 6.78277 6.80154 7.06227 7.64893 7.69235 7.84063 8.00802 8.24372 8.81747 8.95710 9.36024 9.74361 10.29488 10.91760 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003663 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.651685 B = 7642.734268 C = 9324.285857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.485 5.485 3 C 0.042 3.958 4 C 0.449 3.551 5 O -0.554 6.554 6 N -0.576 5.576 7 C -0.289 4.289 8 H 0.101 0.899 9 C 0.018 3.982 10 N -0.908 5.908 11 Si 0.926 3.074 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.042 3.958 16 C 0.147 3.853 17 H 0.070 0.930 18 C -0.127 4.127 19 C -0.134 4.134 20 C 0.092 3.908 21 N -0.613 5.613 22 C 0.561 3.439 23 O -0.444 6.444 24 C -0.185 4.185 25 C -0.080 4.080 26 C -0.106 4.106 27 C -0.126 4.126 28 C -0.092 4.092 29 H 0.062 0.938 30 H 0.090 0.910 31 H -0.014 1.014 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.389 0.611 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.140 0.860 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -22.994 -6.365 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.209 5.209 3 C -0.089 4.089 4 C 0.234 3.766 5 O -0.436 6.436 6 N -0.214 5.214 7 C -0.419 4.419 8 H 0.119 0.881 9 C -0.183 4.183 10 N -0.550 5.550 11 Si 0.754 3.246 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.088 4.088 16 C 0.043 3.957 17 H 0.088 0.912 18 C -0.166 4.166 19 C -0.172 4.172 20 C -0.032 4.032 21 N -0.351 5.351 22 C 0.350 3.650 23 O -0.313 6.313 24 C -0.188 4.188 25 C -0.099 4.099 26 C -0.143 4.143 27 C -0.164 4.164 28 C -0.129 4.129 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.005 0.995 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.222 0.778 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.158 0.842 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.658 -22.895 -5.180 23.624 hybrid contribution 0.135 1.336 -0.563 1.456 sum 2.793 -21.559 -5.743 22.485 Atomic orbital electron populations 1.22302 0.86358 1.01610 0.98840 1.62024 1.09155 1.11028 1.38710 1.21889 1.00003 0.90145 0.96890 1.19793 0.85067 0.82720 0.89043 1.90545 1.42424 1.64104 1.46497 1.41889 1.50476 1.11005 1.18057 1.19717 1.32192 0.95300 0.94708 0.88080 1.25204 0.97287 0.96700 0.99067 1.69631 1.38947 1.12055 1.34385 0.85848 0.78075 0.79029 0.81675 1.19330 1.20931 1.20947 1.22640 1.00058 0.93519 0.92565 1.21501 0.98353 0.92841 0.83028 0.91201 1.22664 1.00998 0.95821 0.97112 1.22793 1.01837 0.97172 0.95429 1.22666 0.92981 0.90477 0.97050 1.48155 1.44679 1.37457 1.04798 1.17523 0.83433 0.82662 0.81413 1.91079 1.30902 1.24456 1.84861 1.21822 1.02342 1.00498 0.94135 1.24016 0.96426 0.96055 0.93405 1.21449 0.96518 0.98532 0.97774 1.22468 0.98161 1.00726 0.95010 1.21573 0.97075 0.96684 0.97573 0.91981 0.89104 0.99533 0.90410 0.94411 0.77822 0.92229 0.91296 0.95045 0.90491 0.90367 0.90236 0.90830 0.92085 0.89823 0.84189 0.90212 0.90466 0.90995 0.91035 0.90530 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 6.92 60.07 0.42 1.51 16 2 N -0.49 -9.13 1.91 -244.37 -0.47 -9.60 16 3 C 0.04 0.86 5.45 -4.98 -0.03 0.83 16 4 C 0.45 11.47 7.47 -10.99 -0.08 11.38 16 5 O -0.55 -15.88 13.15 -0.25 0.00 -15.88 16 6 N -0.58 -15.58 5.29 -10.96 -0.06 -15.63 16 7 C -0.29 -8.48 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 9 C 0.02 0.50 5.50 -17.47 -0.10 0.40 16 10 N -0.91 -25.89 13.05 55.50 0.72 -25.16 16 11 Si 0.93 22.03 29.55 -169.99 -5.02 17.01 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.04 0.60 4.57 -3.82 -0.02 0.58 16 16 C 0.15 1.80 2.89 -66.96 -0.19 1.61 16 17 H 0.07 0.93 6.89 -51.93 -0.36 0.57 16 18 C -0.13 -1.05 6.47 -24.90 -0.16 -1.21 16 19 C -0.13 -0.95 7.08 -24.58 -0.17 -1.12 16 20 C 0.09 0.84 5.24 -2.53 -0.01 0.83 16 21 N -0.61 -8.10 3.07 -164.40 -0.50 -8.60 16 22 C 0.56 9.39 7.37 -12.66 -0.09 9.30 16 23 O -0.44 -9.19 9.81 -0.52 -0.01 -9.20 16 24 C -0.18 -2.66 6.05 -102.72 -0.62 -3.29 16 25 C -0.08 -1.16 10.43 -36.01 -0.38 -1.54 16 26 C -0.11 -1.14 6.80 -26.85 -0.18 -1.32 16 27 C -0.13 -1.18 7.16 -25.09 -0.18 -1.36 16 28 C -0.09 -0.94 4.51 -26.86 -0.12 -1.06 16 29 H 0.06 1.16 5.38 -51.93 -0.28 0.88 16 30 H 0.09 2.15 5.80 -51.93 -0.30 1.84 16 31 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 33 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.39 10.16 7.90 -40.82 -0.32 9.84 16 35 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.07 0.96 7.81 -51.92 -0.41 0.56 16 37 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.08 0.60 7.77 -51.93 -0.40 0.19 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 43 H 0.08 0.68 4.86 -51.93 -0.25 0.43 16 44 H 0.14 2.38 8.03 -52.49 -0.42 1.96 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.73 5.85 -51.93 -0.30 0.43 16 50 H 0.07 0.64 7.27 -51.93 -0.38 0.26 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -34.53 380.74 -9.64 -44.16 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.97 Total: 10.24 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.07 Total: 6.92 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.30 Total: -58.99 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.01 Total: -25.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.53 -9.64 -44.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733927534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.982 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds