Wall clock time and date at job start Tue Mar 31 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99926 * 2 1 4 4 C 1.50696 * 109.47129 * 66.04546 * 3 2 1 5 5 O 1.21295 * 120.00206 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00101 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99854 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00393 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99838 * 180.02562 * 7 6 4 10 10 N 1.31417 * 120.00066 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00207 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46704 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47175 * 119.99728 * 11 9 7 14 14 H 1.48498 * 109.46956 * 239.99962 * 11 9 7 15 15 C 1.46898 * 110.99778 * 236.05071 * 2 1 3 16 16 C 1.53003 * 109.47121 * 293.94847 * 15 2 1 17 17 H 1.09005 * 109.99585 * 66.09735 * 16 15 2 18 18 C 1.54316 * 109.77680 * 187.25357 * 16 15 2 19 19 C 1.55156 * 102.86242 * 141.88846 * 18 16 15 20 20 C 1.54916 * 101.58057 * 324.30307 * 19 18 16 21 21 N 1.47017 * 109.88459 * 305.00547 * 16 15 2 22 22 C 1.34779 * 125.64781 * 61.67180 * 21 16 15 23 23 O 1.21612 * 120.00131 * 359.71960 * 22 21 16 24 24 C 1.47101 * 120.00164 * 179.71897 * 22 21 16 25 25 C 1.32613 * 124.62364 * 180.02562 * 24 22 21 26 26 C 1.51116 * 110.75931 * 179.97438 * 25 24 22 27 27 C 1.54577 * 104.83929 * 16.59621 * 26 25 24 28 28 C 1.51118 * 124.61887 * 0.02562 * 24 22 21 29 29 H 1.08994 * 109.47269 * 183.95184 * 1 2 3 30 30 H 1.08997 * 109.46849 * 303.95230 * 1 2 3 31 31 H 1.08997 * 109.46993 * 63.95156 * 1 2 3 32 32 H 1.08998 * 109.47423 * 186.04793 * 3 2 1 33 33 H 1.09000 * 109.47081 * 306.04566 * 3 2 1 34 34 H 0.96993 * 120.00151 * 0.02562 * 6 4 3 35 35 H 0.96997 * 119.99542 * 180.02562 * 10 9 7 36 36 H 1.09007 * 109.47227 * 173.95419 * 15 2 1 37 37 H 1.08998 * 109.47450 * 53.95358 * 15 2 1 38 38 H 1.09002 * 110.92210 * 23.47610 * 18 16 15 39 39 H 1.08996 * 110.74017 * 260.22006 * 18 16 15 40 40 H 1.08996 * 111.00115 * 206.23085 * 19 18 16 41 41 H 1.08995 * 111.03702 * 82.39167 * 19 18 16 42 42 H 1.09000 * 110.36676 * 278.17031 * 20 19 18 43 43 H 1.08998 * 110.45723 * 155.89450 * 20 19 18 44 44 H 1.07998 * 124.61790 * 359.95519 * 25 24 22 45 45 H 1.08998 * 110.36323 * 257.75471 * 26 25 24 46 46 H 1.08997 * 110.36208 * 135.43812 * 26 25 24 47 47 H 1.09004 * 110.98332 * 93.07560 * 27 26 25 48 48 H 1.09001 * 110.98217 * 216.83188 * 27 26 25 49 49 H 1.08997 * 110.36305 * 44.58196 * 28 24 22 50 50 H 1.09001 * 110.36780 * 282.26187 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0188 3.3199 1.5237 7 6 1.6931 3.9343 2.7052 8 1 1.1301 3.3987 3.4552 9 6 2.0864 5.2467 2.9372 10 7 2.7711 5.8986 2.0244 11 14 1.6420 6.0843 4.5467 12 1 0.8738 5.1420 5.3994 13 1 2.8836 6.4913 5.2523 14 1 0.8147 7.2855 4.2676 15 6 1.9954 -0.7659 -1.1376 16 6 1.6315 -2.2426 -0.9704 17 1 0.5512 -2.3704 -1.0394 18 6 2.3324 -3.0798 -2.0609 19 6 2.7295 -4.3732 -1.3015 20 6 3.0833 -3.8149 0.0996 21 7 2.1106 -2.7314 0.3306 22 6 1.7210 -2.2694 1.5353 23 8 0.9082 -1.3676 1.6069 24 6 2.2788 -2.8560 2.7636 25 6 1.9608 -2.4735 3.9930 26 6 2.7170 -3.2855 5.0189 27 6 3.8705 -3.9455 4.2294 28 6 3.2922 -3.9765 2.7965 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4513 -0.9233 32 1 3.0797 1.3445 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.5242 3.8011 0.8500 35 1 3.0459 6.8146 2.1866 36 1 3.0797 -0.6610 -1.1757 37 1 1.5611 -0.3871 -2.0628 38 1 3.2172 -2.5664 -2.4372 39 1 1.6443 -3.3066 -2.8753 40 1 3.5957 -4.8470 -1.7633 41 1 1.8909 -5.0670 -1.2452 42 1 4.0993 -3.4202 0.1053 43 1 2.9741 -4.5906 0.8575 44 1 1.2576 -1.6885 4.2288 45 1 2.0691 -4.0475 5.4520 46 1 3.1141 -2.6360 5.7989 47 1 4.7725 -3.3351 4.2728 48 1 4.0662 -4.9539 4.5942 49 1 4.0802 -3.7967 2.0652 50 1 2.8064 -4.9331 2.6045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733927534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:38 Heat of formation + Delta-G solvation = -24.604284 kcal Electronic energy + Delta-G solvation = -30850.895455 eV Core-core repulsion = 26879.207894 eV Total energy + Delta-G solvation = -3971.687561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35823 -40.18217 -39.14585 -37.81167 -37.26436 -35.77490 -33.23688 -32.60091 -31.45833 -30.06744 -29.31013 -29.00265 -27.29599 -26.38312 -24.84445 -22.95573 -22.27539 -21.73349 -20.87349 -20.50054 -19.82269 -19.10790 -17.91576 -17.56472 -17.35724 -16.70666 -16.53278 -16.41828 -16.13248 -15.95552 -15.48519 -15.19790 -14.98253 -14.72019 -14.43047 -14.10699 -13.87070 -13.57761 -13.55903 -13.36312 -13.28369 -13.12317 -12.95950 -12.76777 -12.58911 -12.56848 -12.45320 -12.40824 -12.33273 -12.22078 -12.12395 -11.99880 -11.87822 -11.50133 -11.42301 -11.30329 -10.17769 -10.14271 -9.95600 -9.80732 -9.34545 -8.68263 -8.45058 -5.92912 0.64586 1.34442 1.37541 1.52836 2.11890 2.26488 2.29841 2.72359 2.89251 3.21005 3.48719 3.58741 3.70658 3.80206 3.87156 3.95634 4.18058 4.21328 4.25120 4.32640 4.36093 4.37272 4.44003 4.52955 4.53392 4.64371 4.67331 4.72979 4.78416 4.80099 4.88274 4.93024 4.97148 5.03458 5.04887 5.16568 5.18593 5.20547 5.35650 5.37463 5.41067 5.42258 5.48913 5.67386 5.80986 5.95786 6.21473 6.44108 6.65614 6.92097 7.17132 7.60893 7.76016 8.20621 8.73302 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003663 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.651685 B = 7642.734268 C = 9324.285857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.499 5.499 3 C 0.055 3.945 4 C 0.442 3.558 5 O -0.591 6.591 6 N -0.583 5.583 7 C -0.326 4.326 8 H 0.073 0.927 9 C -0.016 4.016 10 N -0.925 5.925 11 Si 0.992 3.008 12 H -0.277 1.277 13 H -0.268 1.268 14 H -0.269 1.269 15 C 0.041 3.959 16 C 0.141 3.859 17 H 0.055 0.945 18 C -0.117 4.117 19 C -0.122 4.122 20 C 0.083 3.917 21 N -0.611 5.611 22 C 0.545 3.455 23 O -0.501 6.501 24 C -0.194 4.194 25 C -0.107 4.107 26 C -0.100 4.100 27 C -0.119 4.119 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.040 0.960 31 H -0.001 1.001 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.392 0.608 35 H 0.276 0.724 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -25.279 -7.802 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.224 5.224 3 C -0.077 4.077 4 C 0.229 3.771 5 O -0.474 6.474 6 N -0.222 5.222 7 C -0.456 4.456 8 H 0.091 0.909 9 C -0.215 4.215 10 N -0.567 5.567 11 Si 0.816 3.184 12 H -0.201 1.201 13 H -0.194 1.194 14 H -0.195 1.195 15 C -0.087 4.087 16 C 0.037 3.963 17 H 0.073 0.927 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.039 4.039 21 N -0.347 5.347 22 C 0.334 3.666 23 O -0.374 6.374 24 C -0.197 4.197 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.156 4.156 28 C -0.120 4.120 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.106 0.894 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.869 -25.215 -6.676 26.535 hybrid contribution -0.576 2.032 -0.162 2.118 sum 4.294 -23.183 -6.838 24.549 Atomic orbital electron populations 1.21938 0.87221 1.00860 0.97005 1.61942 1.08561 1.10185 1.41674 1.21740 1.01104 0.90996 0.93854 1.20797 0.83683 0.82148 0.90521 1.90540 1.43686 1.64818 1.48360 1.41949 1.50956 1.11668 1.17662 1.19629 1.33992 0.96390 0.95566 0.90909 1.26009 0.96510 0.96507 1.02438 1.69692 1.38677 1.12577 1.35722 0.84889 0.78303 0.77844 0.77379 1.20134 1.19355 1.19463 1.22782 1.00346 0.94215 0.91387 1.21662 0.98212 0.92286 0.84152 0.92725 1.22660 1.01316 0.95557 0.96043 1.22797 1.03181 0.96527 0.93518 1.22972 0.92205 0.89614 0.99126 1.48230 1.44599 1.37825 1.04095 1.18074 0.83043 0.82329 0.83120 1.91056 1.33395 1.27035 1.85935 1.22160 1.02985 1.01572 0.92946 1.24093 0.96869 0.96198 0.95520 1.21469 0.96993 0.98379 0.96796 1.22497 0.96948 1.02193 0.93971 1.21610 0.96082 0.95681 0.98579 0.91727 0.94093 0.98310 0.88606 0.92851 0.77438 0.91445 0.90453 0.93485 0.89410 0.88596 0.87325 0.90380 0.91358 0.88504 0.88584 0.88370 0.90657 0.91317 0.87828 0.89359 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.18 6.92 127.69 0.88 4.06 16 2 N -0.50 -19.25 1.91 -927.06 -1.77 -21.01 16 3 C 0.05 2.25 5.45 85.56 0.47 2.72 16 4 C 0.44 23.79 7.47 87.66 0.66 24.44 16 5 O -0.59 -36.48 13.15 2.46 0.03 -36.44 16 6 N -0.58 -32.97 5.29 -306.98 -1.62 -34.59 16 7 C -0.33 -20.00 9.68 84.04 0.81 -19.18 16 8 H 0.07 4.80 7.16 -2.91 -0.02 4.77 16 9 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 10 N -0.92 -52.89 13.05 21.66 0.28 -52.60 16 11 Si 0.99 45.76 29.55 68.60 2.03 47.79 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.04 1.13 4.57 86.30 0.39 1.53 16 16 C 0.14 3.25 2.89 45.34 0.13 3.38 16 17 H 0.05 1.43 6.89 -2.38 -0.02 1.41 16 18 C -0.12 -1.49 6.47 31.78 0.21 -1.29 16 19 C -0.12 -1.19 7.08 31.99 0.23 -0.97 16 20 C 0.08 1.26 5.24 86.86 0.46 1.71 16 21 N -0.61 -15.57 3.07 -792.30 -2.43 -18.00 16 22 C 0.55 18.92 7.37 86.57 0.64 19.55 16 23 O -0.50 -22.35 9.81 1.47 0.01 -22.33 16 24 C -0.19 -5.71 6.05 -18.56 -0.11 -5.82 16 25 C -0.11 -3.37 10.43 24.66 0.26 -3.11 16 26 C -0.10 -2.11 6.80 30.52 0.21 -1.90 16 27 C -0.12 -1.92 7.16 31.66 0.23 -1.70 16 28 C -0.08 -1.49 4.51 30.51 0.14 -1.36 16 29 H 0.06 2.57 5.38 -2.39 -0.01 2.56 16 30 H 0.04 2.09 5.80 -2.39 -0.01 2.07 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.10 3.59 7.93 -2.39 -0.02 3.57 16 33 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 34 H 0.39 21.15 7.90 -92.71 -0.73 20.42 16 35 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.08 1.99 7.81 -2.38 -0.02 1.97 16 37 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.09 0.98 7.77 -2.39 -0.02 0.96 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 43 H 0.10 1.23 4.86 -2.39 -0.01 1.22 16 44 H 0.10 3.79 8.03 -2.91 -0.02 3.77 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.40 5.85 -2.39 -0.01 1.39 16 50 H 0.10 1.32 7.27 -2.39 -0.02 1.30 16 Total: -1.00 -81.80 380.74 2.81 -78.99 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.22 Total: 36.57 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.05 Total: 21.63 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.54 Total: -126.20 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: 0.05 Total: -58.78 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -81.80 2.81 -78.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733927534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.384 kcal (2) G-P(sol) polarization free energy of solvation -81.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds