Wall clock time and date at job start Tue Mar 31 2020 18:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00015 * 2 1 4 4 C 1.50703 * 109.47092 * 66.04869 * 3 2 1 5 5 O 1.21296 * 119.99804 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00247 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00157 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99777 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00112 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00120 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00087 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47100 * 59.99498 * 11 9 7 13 13 H 1.48498 * 109.47115 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46984 * 299.99448 * 11 9 7 15 15 C 1.46896 * 111.00006 * 236.04768 * 2 1 3 16 16 C 1.53035 * 109.46409 * 298.95287 * 15 2 1 17 17 C 1.53186 * 109.31670 * 181.36898 * 16 15 2 18 18 N 1.46923 * 108.77583 * 305.36703 * 17 16 15 19 19 C 1.34786 * 120.62854 * 233.58212 * 18 17 16 20 20 O 1.21614 * 119.99909 * 5.22600 * 19 18 17 21 21 C 1.47101 * 119.99632 * 184.95017 * 19 18 17 22 22 C 1.32997 * 119.99740 * 175.27617 * 21 19 18 23 23 C 1.51401 * 136.31641 * 359.63003 * 22 21 19 24 24 C 1.53374 * 87.51836 * 206.05751 * 23 22 21 25 25 C 1.51405 * 136.31339 * 179.97438 * 22 21 19 26 26 C 1.46919 * 118.73911 * 53.86264 * 18 17 16 27 27 C 1.53048 * 109.44881 * 59.01401 * 15 2 1 28 28 H 1.08997 * 109.46847 * 183.95085 * 1 2 3 29 29 H 1.08999 * 109.46841 * 303.95351 * 1 2 3 30 30 H 1.08998 * 109.47350 * 63.95260 * 1 2 3 31 31 H 1.09001 * 109.47065 * 186.04244 * 3 2 1 32 32 H 1.08998 * 109.47133 * 306.04791 * 3 2 1 33 33 H 0.96998 * 119.99760 * 359.97438 * 6 4 3 34 34 H 0.97003 * 120.00201 * 179.97438 * 10 9 7 35 35 H 1.09005 * 109.46461 * 178.97898 * 15 2 1 36 36 H 1.09005 * 109.49636 * 61.41743 * 16 15 2 37 37 H 1.08999 * 109.52594 * 301.34376 * 16 15 2 38 38 H 1.09007 * 109.58823 * 185.57955 * 17 16 15 39 39 H 1.09003 * 109.70467 * 65.22773 * 17 16 15 40 40 H 1.07997 * 120.00100 * 355.27328 * 21 19 18 41 41 H 1.08998 * 113.56192 * 320.63450 * 23 22 21 42 42 H 1.08999 * 113.56084 * 91.37324 * 23 22 21 43 43 H 1.09002 * 113.97119 * 220.29586 * 24 23 22 44 44 H 1.09005 * 113.71345 * 88.80414 * 24 23 22 45 45 H 1.09001 * 113.56352 * 268.62636 * 25 22 21 46 46 H 1.09001 * 113.56265 * 39.29127 * 25 22 21 47 47 H 1.09001 * 109.59295 * 65.92446 * 26 18 17 48 48 H 1.09007 * 109.58769 * 186.35435 * 26 18 17 49 49 H 1.08992 * 109.49765 * 298.57373 * 27 15 2 50 50 H 1.08998 * 109.49620 * 58.67132 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0055 1.4452 2.1412 6 7 2.0180 3.3202 1.5234 7 6 1.6924 3.9346 2.7049 8 1 1.1301 3.3986 3.4552 9 6 2.0848 5.2473 2.9365 10 7 2.7685 5.8996 2.0234 11 14 1.6404 6.0848 4.5461 12 1 2.2331 5.3280 5.6780 13 1 2.1720 7.4713 4.5459 14 1 0.1632 6.1206 4.6941 15 6 1.9954 -0.7659 -1.1376 16 6 1.5261 -2.2189 -1.0350 17 6 2.1049 -3.0221 -2.2039 18 7 1.7387 -2.3571 -3.4618 19 6 1.1176 -3.0400 -4.4441 20 8 0.7700 -4.1905 -4.2588 21 6 0.8550 -2.3914 -5.7380 22 6 0.3278 -3.0920 -6.7381 23 6 -0.1236 -4.5207 -6.9553 24 6 0.1539 -4.3109 -8.4491 25 6 -0.0829 -2.8182 -8.1694 26 6 2.0679 -0.9354 -3.6312 27 6 1.4844 -0.1541 -2.4440 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3634 0.4512 -0.9233 31 1 3.0798 1.3444 -0.1082 32 1 1.5611 1.9274 -0.8309 33 1 2.5234 3.8014 0.8496 34 1 3.0421 6.8161 2.1849 35 1 3.0850 -0.7345 -1.1236 36 1 0.4373 -2.2531 -1.0738 37 1 1.8701 -2.6472 -0.0935 38 1 1.6950 -4.0321 -2.1918 39 1 3.1905 -3.0673 -2.1170 40 1 1.0901 -1.3464 -5.8759 41 1 0.5303 -5.2595 -6.4920 42 1 -1.1766 -4.6845 -6.7265 43 1 -0.5920 -4.7594 -9.1053 44 1 1.1768 -4.5473 -8.7424 45 1 -1.1248 -2.5154 -8.2734 46 1 0.6037 -2.1597 -8.7014 47 1 3.1505 -0.8114 -3.6571 48 1 1.6336 -0.5679 -4.5610 49 1 0.3961 -0.2077 -2.4696 50 1 1.7994 0.8876 -2.5056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734267305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:23 Heat of formation + Delta-G solvation = -13.187551 kcal Electronic energy + Delta-G solvation = -28871.740621 eV Core-core repulsion = 24900.548126 eV Total energy + Delta-G solvation = -3971.192495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56680 -39.31467 -38.55996 -37.58833 -35.59013 -33.86970 -32.32812 -31.25084 -31.02256 -30.56223 -27.88825 -26.18638 -26.03656 -24.85445 -23.88094 -23.45933 -22.46096 -20.59755 -19.29448 -19.07582 -18.04714 -17.82090 -17.60662 -16.30094 -16.14064 -15.88893 -15.34180 -15.19431 -15.01486 -14.66236 -14.64702 -14.32874 -14.09770 -13.85892 -13.59863 -13.51311 -13.14846 -12.84682 -12.64323 -12.44659 -12.31853 -12.16770 -12.07841 -11.80978 -11.56648 -11.41739 -11.35887 -11.21094 -11.14024 -10.91172 -10.87445 -10.80746 -10.43935 -10.41879 -10.20563 -9.81396 -9.55394 -9.45994 -8.80297 -8.42569 -7.96569 -7.78703 -6.41325 -3.81995 1.06628 2.77987 3.08553 3.20247 3.25826 3.30267 3.89013 3.91217 3.98658 4.08537 4.24550 4.33634 4.46263 4.67874 4.70849 4.75944 4.83605 5.05111 5.10745 5.11811 5.12785 5.23252 5.24503 5.27241 5.31124 5.39501 5.41734 5.48484 5.55467 5.58153 5.68617 5.75393 5.77686 5.79643 5.84276 5.90375 5.93272 6.00262 6.10519 6.21156 6.26299 6.29696 6.42393 6.60042 7.22769 7.30962 7.42381 7.55473 8.03159 8.07006 8.62728 9.18827 9.55232 10.07494 10.76363 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.001908 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.783760 B =14673.535216 C =15193.377035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.510 5.510 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.565 5.565 7 C -0.299 4.299 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.085 3.915 16 C -0.125 4.125 17 C 0.114 3.886 18 N -0.608 5.608 19 C 0.553 3.447 20 O -0.546 6.546 21 C -0.203 4.203 22 C -0.062 4.062 23 C -0.105 4.105 24 C -0.143 4.143 25 C -0.109 4.109 26 C 0.112 3.888 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.016 0.984 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -15.070 -21.532 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.232 5.232 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.202 5.202 7 C -0.428 4.428 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.024 4.024 16 C -0.163 4.163 17 C -0.009 4.009 18 N -0.342 5.342 19 C 0.344 3.656 20 O -0.425 6.425 21 C -0.224 4.224 22 C -0.064 4.064 23 C -0.142 4.142 24 C -0.180 4.180 25 C -0.146 4.146 26 C -0.012 4.012 27 C -0.213 4.213 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.091 0.909 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.645 -16.104 -20.382 26.028 hybrid contribution 0.006 1.564 -0.367 1.606 sum -1.639 -14.540 -20.749 25.390 Atomic orbital electron populations 1.22590 0.87056 1.02006 1.01329 1.61829 1.08681 1.12716 1.39963 1.21869 1.00573 0.89176 0.97012 1.19763 0.85423 0.82909 0.88994 1.90488 1.43877 1.64633 1.47123 1.41857 1.49507 1.10780 1.18014 1.19646 1.32988 0.95431 0.94762 0.87994 1.25248 0.96842 0.96642 0.99201 1.69602 1.38127 1.12239 1.34450 0.85924 0.78882 0.77912 0.81539 1.19900 1.21006 1.19954 1.21766 0.99663 0.93379 0.87596 1.21970 1.01583 0.94457 0.98325 1.21623 0.99647 0.97563 0.82043 1.48015 1.58939 1.10993 1.16206 1.18399 0.77236 0.85791 0.84143 1.90754 1.51974 1.17875 1.81915 1.21709 1.08283 1.00085 0.92274 1.23502 0.91422 0.97354 0.94085 1.22211 1.02405 0.94459 0.95084 1.22741 1.02466 0.95888 0.96941 1.22367 1.02403 0.97782 0.92045 1.21857 1.00435 0.79824 0.99072 1.22772 1.02200 1.00274 0.96095 0.92066 0.88755 0.96524 0.89518 0.93420 0.77540 0.91862 0.89934 0.91257 0.89579 0.88839 0.91361 0.84719 0.89676 0.88359 0.90365 0.89744 0.88047 0.90337 0.91036 0.89591 0.90858 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.46 60.07 0.51 0.80 16 2 N -0.51 -8.20 4.49 -236.28 -1.06 -9.26 16 3 C 0.05 0.78 4.89 -4.97 -0.02 0.75 16 4 C 0.44 10.33 7.47 -10.99 -0.08 10.25 16 5 O -0.58 -15.42 13.91 5.54 0.08 -15.35 16 6 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 11 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.09 1.03 2.18 -67.67 -0.15 0.88 16 16 C -0.12 -1.42 5.11 -26.62 -0.14 -1.56 16 17 C 0.11 1.19 6.44 -3.72 -0.02 1.17 16 18 N -0.61 -6.36 2.97 -173.90 -0.52 -6.88 16 19 C 0.55 6.58 7.64 -12.66 -0.10 6.49 16 20 O -0.55 -8.13 14.64 5.27 0.08 -8.05 16 21 C -0.20 -1.89 9.34 -37.81 -0.35 -2.24 16 22 C -0.06 -0.53 6.92 -100.48 -0.70 -1.23 16 23 C -0.10 -0.87 6.95 -27.56 -0.19 -1.06 16 24 C -0.14 -0.83 8.17 -26.18 -0.21 -1.04 16 25 C -0.11 -0.63 7.96 -27.39 -0.22 -0.85 16 26 C 0.11 0.94 6.35 -3.49 -0.02 0.92 16 27 C -0.17 -1.78 4.67 -26.38 -0.12 -1.90 16 28 H 0.06 0.91 6.36 -51.93 -0.33 0.58 16 29 H 0.09 1.88 5.82 -51.93 -0.30 1.57 16 30 H 0.02 0.24 6.31 -51.93 -0.33 -0.09 16 31 H 0.09 1.35 8.00 -51.93 -0.42 0.94 16 32 H 0.05 0.75 6.90 -51.93 -0.36 0.39 16 33 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 36 H 0.07 0.86 6.50 -51.93 -0.34 0.53 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.14 0.94 5.91 -52.49 -0.31 0.63 16 41 H 0.08 0.84 7.59 -51.93 -0.39 0.45 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.58 5.37 -51.93 -0.28 0.31 16 49 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 50 H 0.08 0.80 6.69 -51.93 -0.35 0.45 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -32.77 388.38 -9.72 -42.49 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.73 Total: 9.63 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.06 Total: 3.44 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.91 Total: -53.99 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.15 Total: -23.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.77 -9.72 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734267305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.303 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds