Wall clock time and date at job start Tue Mar 31 2020 18:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00015 * 2 1 4 4 C 1.50703 * 109.47092 * 66.04869 * 3 2 1 5 5 O 1.21296 * 119.99804 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00247 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00157 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99777 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00112 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00120 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00087 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47100 * 59.99498 * 11 9 7 13 13 H 1.48498 * 109.47115 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46984 * 299.99448 * 11 9 7 15 15 C 1.46896 * 111.00006 * 236.04768 * 2 1 3 16 16 C 1.53035 * 109.46409 * 298.95287 * 15 2 1 17 17 C 1.53186 * 109.31670 * 181.36898 * 16 15 2 18 18 N 1.46923 * 108.77583 * 305.36703 * 17 16 15 19 19 C 1.34786 * 120.62854 * 233.58212 * 18 17 16 20 20 O 1.21614 * 119.99909 * 5.22600 * 19 18 17 21 21 C 1.47101 * 119.99632 * 184.95017 * 19 18 17 22 22 C 1.32997 * 119.99740 * 175.27617 * 21 19 18 23 23 C 1.51401 * 136.31641 * 359.63003 * 22 21 19 24 24 C 1.53374 * 87.51836 * 206.05751 * 23 22 21 25 25 C 1.51405 * 136.31339 * 179.97438 * 22 21 19 26 26 C 1.46919 * 118.73911 * 53.86264 * 18 17 16 27 27 C 1.53048 * 109.44881 * 59.01401 * 15 2 1 28 28 H 1.08997 * 109.46847 * 183.95085 * 1 2 3 29 29 H 1.08999 * 109.46841 * 303.95351 * 1 2 3 30 30 H 1.08998 * 109.47350 * 63.95260 * 1 2 3 31 31 H 1.09001 * 109.47065 * 186.04244 * 3 2 1 32 32 H 1.08998 * 109.47133 * 306.04791 * 3 2 1 33 33 H 0.96998 * 119.99760 * 359.97438 * 6 4 3 34 34 H 0.97003 * 120.00201 * 179.97438 * 10 9 7 35 35 H 1.09005 * 109.46461 * 178.97898 * 15 2 1 36 36 H 1.09005 * 109.49636 * 61.41743 * 16 15 2 37 37 H 1.08999 * 109.52594 * 301.34376 * 16 15 2 38 38 H 1.09007 * 109.58823 * 185.57955 * 17 16 15 39 39 H 1.09003 * 109.70467 * 65.22773 * 17 16 15 40 40 H 1.07997 * 120.00100 * 355.27328 * 21 19 18 41 41 H 1.08998 * 113.56192 * 320.63450 * 23 22 21 42 42 H 1.08999 * 113.56084 * 91.37324 * 23 22 21 43 43 H 1.09002 * 113.97119 * 220.29586 * 24 23 22 44 44 H 1.09005 * 113.71345 * 88.80414 * 24 23 22 45 45 H 1.09001 * 113.56352 * 268.62636 * 25 22 21 46 46 H 1.09001 * 113.56265 * 39.29127 * 25 22 21 47 47 H 1.09001 * 109.59295 * 65.92446 * 26 18 17 48 48 H 1.09007 * 109.58769 * 186.35435 * 26 18 17 49 49 H 1.08992 * 109.49765 * 298.57373 * 27 15 2 50 50 H 1.08998 * 109.49620 * 58.67132 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0055 1.4452 2.1412 6 7 2.0180 3.3202 1.5234 7 6 1.6924 3.9346 2.7049 8 1 1.1301 3.3986 3.4552 9 6 2.0848 5.2473 2.9365 10 7 2.7685 5.8996 2.0234 11 14 1.6404 6.0848 4.5461 12 1 2.2331 5.3280 5.6780 13 1 2.1720 7.4713 4.5459 14 1 0.1632 6.1206 4.6941 15 6 1.9954 -0.7659 -1.1376 16 6 1.5261 -2.2189 -1.0350 17 6 2.1049 -3.0221 -2.2039 18 7 1.7387 -2.3571 -3.4618 19 6 1.1176 -3.0400 -4.4441 20 8 0.7700 -4.1905 -4.2588 21 6 0.8550 -2.3914 -5.7380 22 6 0.3278 -3.0920 -6.7381 23 6 -0.1236 -4.5207 -6.9553 24 6 0.1539 -4.3109 -8.4491 25 6 -0.0829 -2.8182 -8.1694 26 6 2.0679 -0.9354 -3.6312 27 6 1.4844 -0.1541 -2.4440 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3634 0.4512 -0.9233 31 1 3.0798 1.3444 -0.1082 32 1 1.5611 1.9274 -0.8309 33 1 2.5234 3.8014 0.8496 34 1 3.0421 6.8161 2.1849 35 1 3.0850 -0.7345 -1.1236 36 1 0.4373 -2.2531 -1.0738 37 1 1.8701 -2.6472 -0.0935 38 1 1.6950 -4.0321 -2.1918 39 1 3.1905 -3.0673 -2.1170 40 1 1.0901 -1.3464 -5.8759 41 1 0.5303 -5.2595 -6.4920 42 1 -1.1766 -4.6845 -6.7265 43 1 -0.5920 -4.7594 -9.1053 44 1 1.1768 -4.5473 -8.7424 45 1 -1.1248 -2.5154 -8.2734 46 1 0.6037 -2.1597 -8.7014 47 1 3.1505 -0.8114 -3.6571 48 1 1.6336 -0.5679 -4.5610 49 1 0.3961 -0.2077 -2.4696 50 1 1.7994 0.8876 -2.5056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734267305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:23 Heat of formation + Delta-G solvation = -35.114498 kcal Electronic energy + Delta-G solvation = -28872.691445 eV Core-core repulsion = 24900.548126 eV Total energy + Delta-G solvation = -3972.143318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45252 -40.47922 -39.60123 -38.81156 -36.74289 -35.81531 -33.32054 -33.14618 -31.96351 -31.30968 -29.35914 -27.29879 -26.69794 -26.42118 -24.81944 -24.35861 -23.35513 -21.52513 -20.85796 -20.13531 -19.80007 -18.73112 -18.46807 -17.79327 -16.96250 -16.62472 -16.55432 -16.44031 -16.27761 -16.00900 -15.70515 -15.52813 -15.24245 -15.08080 -15.05256 -14.60916 -14.22086 -13.91916 -13.67413 -13.46834 -13.34284 -13.18343 -13.05643 -12.89996 -12.82969 -12.69688 -12.58950 -12.42013 -12.31686 -12.15449 -12.11514 -11.87661 -11.72832 -11.48541 -11.47197 -11.36023 -10.63394 -10.24963 -10.23940 -9.97418 -9.61714 -9.08390 -8.44456 -5.92605 0.36336 1.40435 1.42289 1.52772 2.00427 2.09072 2.26568 2.30288 2.78613 3.22560 3.27564 3.44048 3.54408 3.71465 3.79521 3.88635 3.97348 4.03307 4.16654 4.25235 4.27035 4.32021 4.35838 4.46284 4.55084 4.56116 4.59622 4.63784 4.69284 4.73923 4.77144 4.80504 4.87653 4.88731 4.94414 4.99435 5.04417 5.09158 5.19525 5.25643 5.32749 5.34759 5.42997 5.54369 5.69701 5.92617 6.10422 6.25960 6.43560 6.64042 7.15941 7.18193 7.60060 8.16719 8.72574 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.001908 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.783760 B =14673.535216 C =15193.377035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.530 5.530 3 C 0.059 3.941 4 C 0.440 3.560 5 O -0.617 6.617 6 N -0.574 5.574 7 C -0.332 4.332 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.087 3.913 16 C -0.117 4.117 17 C 0.118 3.882 18 N -0.608 5.608 19 C 0.544 3.456 20 O -0.588 6.588 21 C -0.216 4.216 22 C -0.069 4.069 23 C -0.118 4.118 24 C -0.134 4.134 25 C -0.098 4.098 26 C 0.113 3.887 27 C -0.167 4.167 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.277 0.723 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.161 0.839 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.108 0.892 49 H 0.061 0.939 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -14.119 -23.892 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.072 4.072 4 C 0.227 3.773 5 O -0.503 6.503 6 N -0.212 5.212 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.021 4.021 16 C -0.155 4.155 17 C -0.005 4.005 18 N -0.340 5.340 19 C 0.336 3.664 20 O -0.471 6.471 21 C -0.236 4.236 22 C -0.071 4.071 23 C -0.155 4.155 24 C -0.171 4.171 25 C -0.134 4.134 26 C -0.009 4.009 27 C -0.207 4.207 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.179 0.821 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.133 0.867 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.126 0.874 49 H 0.079 0.921 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.834 -15.133 -22.769 27.352 hybrid contribution -0.262 1.155 0.366 1.240 sum -1.096 -13.978 -22.403 26.429 Atomic orbital electron populations 1.22395 0.87602 1.01891 1.00192 1.61753 1.08423 1.12320 1.42747 1.21730 1.02094 0.89582 0.93758 1.20873 0.83635 0.82198 0.90569 1.90470 1.45213 1.65412 1.49181 1.41915 1.50137 1.11589 1.17553 1.19596 1.34446 0.96389 0.95776 0.90511 1.25984 0.96336 0.96614 1.02252 1.69657 1.38134 1.12614 1.35638 0.85028 0.78546 0.77339 0.77653 1.19876 1.19460 1.19851 1.21840 1.00262 0.92820 0.87177 1.21870 1.00628 0.94460 0.98585 1.21541 1.00462 0.96594 0.81863 1.48117 1.58282 1.11858 1.15717 1.18944 0.76697 0.85480 0.85258 1.90733 1.53808 1.19765 1.82779 1.21806 1.09468 1.01249 0.91093 1.23947 0.90265 0.97426 0.95486 1.22309 1.01872 0.94103 0.97193 1.22732 1.03126 0.96155 0.95083 1.22399 1.03480 0.97874 0.89655 1.22022 1.01710 0.78078 0.99093 1.22695 1.01463 1.00907 0.95618 0.91256 0.92895 0.94926 0.87104 0.91111 0.76983 0.91346 0.88571 0.92728 0.90145 0.90442 0.89561 0.82143 0.92198 0.88409 0.88745 0.89519 0.86652 0.88699 0.89024 0.87423 0.92060 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 8.46 127.69 1.08 1.96 16 2 N -0.53 -16.50 4.49 -901.45 -4.05 -20.54 16 3 C 0.06 1.96 4.89 85.56 0.42 2.37 16 4 C 0.44 20.66 7.47 87.66 0.66 21.32 16 5 O -0.62 -34.01 13.91 -3.08 -0.04 -34.06 16 6 N -0.57 -29.10 5.29 -306.98 -1.62 -30.73 16 7 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 10 N -0.92 -49.09 13.05 21.66 0.28 -48.80 16 11 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.09 1.92 2.18 44.94 0.10 2.02 16 16 C -0.12 -2.58 5.11 30.67 0.16 -2.42 16 17 C 0.12 2.37 6.44 86.36 0.56 2.92 16 18 N -0.61 -11.72 2.97 -822.33 -2.44 -14.16 16 19 C 0.54 12.57 7.64 86.57 0.66 13.23 16 20 O -0.59 -18.01 14.64 -4.07 -0.06 -18.07 16 21 C -0.22 -3.63 9.34 23.43 0.22 -3.41 16 22 C -0.07 -1.09 6.92 -17.17 -0.12 -1.20 16 23 C -0.12 -1.91 6.95 30.06 0.21 -1.71 16 24 C -0.13 -1.28 8.17 30.95 0.25 -1.03 16 25 C -0.10 -0.85 7.96 30.17 0.24 -0.61 16 26 C 0.11 1.53 6.35 86.51 0.55 2.08 16 27 C -0.17 -2.95 4.67 30.82 0.14 -2.81 16 28 H 0.07 2.08 6.36 -2.39 -0.02 2.07 16 29 H 0.05 2.17 5.82 -2.39 -0.01 2.16 16 30 H 0.03 0.93 6.31 -2.39 -0.02 0.92 16 31 H 0.11 3.16 8.00 -2.39 -0.02 3.14 16 32 H 0.07 2.04 6.90 -2.39 -0.02 2.02 16 33 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 34 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.10 1.92 8.03 -2.38 -0.02 1.90 16 36 H 0.05 1.36 6.50 -2.38 -0.02 1.34 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.83 7.00 -2.38 -0.02 1.81 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.16 1.70 5.91 -2.91 -0.02 1.69 16 41 H 0.06 1.26 7.59 -2.39 -0.02 1.24 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.11 1.03 5.37 -2.38 -0.01 1.02 16 49 H 0.06 1.26 6.47 -2.39 -0.02 1.24 16 50 H 0.09 1.45 6.69 -2.39 -0.02 1.43 16 Total: -1.00 -73.73 388.38 0.73 -73.00 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.23 Total: 33.90 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.40 Total: 14.55 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -7.82 Total: -114.23 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.10 Total: -52.13 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.73 0.73 -73.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734267305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.887 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds