Wall clock time and date at job start Tue Mar 31 2020 18:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99717 * 2 1 4 4 O 1.21280 * 119.99984 * 4.58483 * 3 2 1 5 5 C 1.50695 * 119.99826 * 184.58319 * 3 2 1 6 6 C 1.50701 * 112.85129 * 66.15518 * 5 3 2 7 7 O 1.21280 * 120.00119 * 245.85583 * 6 5 3 8 8 N 1.34781 * 119.99938 * 65.85648 * 6 5 3 9 9 C 1.46495 * 119.99602 * 184.33556 * 8 6 5 10 10 H 1.08999 * 115.56979 * 350.70805 * 9 8 6 11 11 C 1.53034 * 117.50026 * 136.41663 * 9 8 6 12 12 C 1.52819 * 117.50187 * 204.99984 * 9 8 6 13 13 C 1.53188 * 117.71711 * 144.90185 * 12 9 8 14 14 C 1.53344 * 108.76394 * 158.87715 * 13 12 9 15 15 N 1.46843 * 108.81978 * 51.31061 * 14 13 12 16 16 C 1.36933 * 120.38390 * 122.82396 * 15 14 13 17 17 H 1.08004 * 120.00112 * 326.04106 * 16 15 14 18 18 C 1.38811 * 120.00295 * 146.03823 * 16 15 14 19 19 N 1.31618 * 119.99554 * 343.47570 * 18 16 15 20 20 Si 1.86790 * 120.00382 * 163.47841 * 18 16 15 21 21 H 1.48501 * 109.46998 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47585 * 120.00186 * 20 18 16 23 23 H 1.48503 * 109.47226 * 240.00088 * 20 18 16 24 24 C 1.46841 * 119.23559 * 303.10491 * 15 14 13 25 25 C 1.53184 * 117.71251 * 0.13537 * 12 9 8 26 26 C 1.53788 * 113.61241 * 197.34753 * 5 3 2 27 27 C 1.53960 * 87.01675 * 89.23194 * 26 5 3 28 28 C 1.53782 * 113.61545 * 294.95601 * 5 3 2 29 29 H 1.09000 * 109.47590 * 299.99645 * 1 2 3 30 30 H 1.08995 * 109.47271 * 60.00681 * 1 2 3 31 31 H 1.09008 * 109.46578 * 180.02562 * 1 2 3 32 32 H 0.96994 * 120.00430 * 179.97438 * 2 1 3 33 33 H 0.97001 * 119.99676 * 4.33531 * 8 6 5 34 34 H 1.08999 * 117.50836 * 0.02562 * 11 9 8 35 35 H 1.09006 * 117.52872 * 214.94378 * 11 9 8 36 36 H 1.08995 * 109.58320 * 39.09192 * 13 12 9 37 37 H 1.08996 * 109.58472 * 278.66535 * 13 12 9 38 38 H 1.08995 * 109.58532 * 291.50586 * 14 13 12 39 39 H 1.09003 * 109.68822 * 171.17406 * 14 13 12 40 40 H 0.97003 * 120.00234 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.57871 * 176.69462 * 24 15 14 42 42 H 1.09004 * 109.57518 * 297.09197 * 24 15 14 43 43 H 1.09004 * 109.58937 * 320.90848 * 25 12 9 44 44 H 1.09005 * 109.58397 * 81.33697 * 25 12 9 45 45 H 1.09001 * 113.61514 * 203.74657 * 26 5 3 46 46 H 1.09001 * 113.61600 * 334.65578 * 26 5 3 47 47 H 1.09000 * 113.53303 * 270.80573 * 27 26 5 48 48 H 1.08996 * 113.74337 * 139.94830 * 27 26 5 49 49 H 1.08996 * 113.61551 * 25.34643 * 28 5 3 50 50 H 1.08998 * 113.61209 * 156.17095 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5353 2.2159 0.0840 5 6 3.6421 1.1694 -0.1043 6 6 4.1373 0.6600 -1.4333 7 8 4.7678 -0.3745 -1.4896 8 7 3.8795 1.3541 -2.5595 9 6 4.2775 0.8123 -3.8611 10 1 4.9124 -0.0732 -3.8279 11 6 3.2698 0.9166 -5.0081 12 6 4.5124 1.8066 -4.9975 13 6 5.6229 1.4893 -6.0038 14 6 5.3561 2.2711 -7.2957 15 7 5.1407 3.6839 -6.9586 16 6 5.9263 4.6567 -7.5168 17 1 6.9653 4.4547 -7.7314 18 6 5.3873 5.9026 -7.8069 19 7 4.0814 6.0589 -7.8579 20 14 6.5152 7.3572 -8.1249 21 1 7.9300 6.9213 -8.0083 22 1 6.2701 7.8843 -9.4914 23 1 6.2422 8.4227 -7.1271 24 6 4.0772 4.0411 -6.0111 25 6 4.3180 3.2953 -4.6931 26 6 4.2876 2.4974 0.3256 27 6 4.3362 1.9193 1.7518 28 6 4.3443 0.5252 1.1027 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.9500 -0.8400 0.0004 33 1 3.4305 2.2124 -2.5082 34 1 2.3109 1.3888 -4.7943 35 1 3.2415 0.1001 -5.7297 36 1 5.6277 0.4206 -6.2177 37 1 6.5867 1.7856 -5.5898 38 1 4.4680 1.8732 -7.7867 39 1 6.2133 2.1814 -7.9630 40 1 3.7047 6.9296 -8.0602 41 1 4.0943 5.1159 -5.8311 42 1 3.1097 3.7530 -6.4224 43 1 3.4570 3.4248 -4.0373 44 1 5.2116 3.6888 -4.2084 45 1 5.2720 2.6659 -0.1109 46 1 3.6257 3.3575 0.2245 47 1 3.4386 2.1242 2.3353 48 1 5.2540 2.1557 2.2901 49 1 3.7282 -0.2045 1.6280 50 1 5.3437 0.1523 0.8786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752430477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:49 Heat of formation + Delta-G solvation = -7.461830 kcal Electronic energy + Delta-G solvation = -30158.188727 eV Core-core repulsion = 26187.244518 eV Total energy + Delta-G solvation = -3970.944209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45929 -39.54632 -38.49125 -37.23057 -35.47771 -34.94684 -33.19260 -31.50018 -30.13762 -28.81893 -28.15969 -26.45737 -25.77412 -24.33306 -22.61062 -22.42473 -21.87866 -21.14600 -20.48172 -19.64566 -18.43980 -18.06360 -16.70475 -16.56040 -16.26913 -16.14438 -15.43518 -15.23949 -14.87585 -14.59973 -14.44670 -14.17416 -13.74403 -13.58129 -13.37838 -13.16341 -13.05353 -12.82085 -12.67184 -12.63025 -12.35412 -12.28587 -11.72755 -11.66683 -11.54006 -11.37985 -11.31595 -10.99464 -10.77212 -10.75439 -10.50127 -10.29197 -10.28341 -10.02444 -9.82191 -9.70598 -9.58118 -9.50430 -9.36706 -8.51390 -8.46127 -6.57104 -5.79808 -3.27829 2.07332 2.37571 2.81582 2.99162 3.36197 3.44626 3.46974 4.02224 4.10426 4.21481 4.31843 4.43515 4.49209 4.50982 4.86740 4.95842 5.04203 5.11004 5.12942 5.16430 5.31904 5.39051 5.44914 5.45828 5.50087 5.57195 5.63128 5.66622 5.72511 5.82460 5.99073 6.00795 6.02285 6.07900 6.09639 6.28287 6.42970 6.52004 6.57047 6.63185 6.69056 6.83700 7.00474 7.03607 7.29890 7.40439 7.59027 7.79194 7.81586 8.04708 8.49384 9.22089 9.84148 10.44332 11.27865 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.002827 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.294219 B = 9903.193313 C =10214.671532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.729 5.729 3 C 0.545 3.455 4 O -0.523 6.523 5 C -0.139 4.139 6 C 0.538 3.462 7 O -0.535 6.535 8 N -0.687 5.687 9 C 0.066 3.934 10 H 0.132 0.868 11 C -0.182 4.182 12 C -0.094 4.094 13 C -0.098 4.098 14 C 0.150 3.850 15 N -0.588 5.588 16 C -0.258 4.258 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.178 3.822 25 C -0.106 4.106 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.102 4.102 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.405 0.595 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.080 0.920 42 H 0.019 0.981 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -13.549 18.187 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.381 5.381 3 C 0.330 3.670 4 O -0.398 6.398 5 C -0.145 4.145 6 C 0.323 3.677 7 O -0.412 6.412 8 N -0.335 5.335 9 C -0.040 4.040 10 H 0.150 0.850 11 C -0.220 4.220 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.023 3.977 15 N -0.310 5.310 16 C -0.388 4.388 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.541 5.541 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.052 3.948 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.178 4.178 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.239 0.761 33 H 0.241 0.759 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.443 -13.377 18.129 22.964 hybrid contribution 0.280 0.742 -0.260 0.835 sum -4.163 -12.635 17.870 22.278 Atomic orbital electron populations 1.21595 0.78943 1.02538 1.02607 1.45726 1.08027 1.08712 1.75620 1.19491 0.87690 0.83930 0.75938 1.90735 1.69364 1.31262 1.48423 1.22378 0.93718 1.03013 0.95437 1.19757 0.79684 0.83970 0.84325 1.90692 1.40073 1.23905 1.86486 1.45427 1.59578 1.23361 1.05179 1.21926 1.02698 1.00816 0.78529 0.84996 1.23532 0.94925 1.03135 1.00412 1.21946 0.97254 0.93482 0.96885 1.21695 0.96498 0.98697 0.96825 1.20860 0.98271 0.85898 0.92657 1.43896 1.38631 1.00451 1.48052 1.19164 0.91369 0.92163 1.36081 0.92025 1.25179 0.95424 0.99532 0.98994 1.70045 1.09640 1.22842 1.51576 0.86280 0.80466 0.82885 0.77470 1.20161 1.21673 1.21517 1.20640 0.90189 0.98696 0.85257 1.21822 0.99838 0.92042 1.00801 1.22916 1.01358 0.94708 0.96034 1.22903 1.03041 0.95483 0.96404 1.22844 1.01711 0.97111 0.92368 0.91932 0.91917 0.90411 0.76061 0.75903 0.88967 0.88363 0.92885 0.91815 0.96304 0.92622 0.93679 0.90156 0.96247 0.93793 0.91963 0.88536 0.88810 0.89751 0.90215 0.90668 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.71 59.85 0.64 1.26 16 2 N -0.73 -6.37 5.71 -67.08 -0.38 -6.75 16 3 C 0.55 6.15 6.43 -10.99 -0.07 6.08 16 4 O -0.52 -7.45 15.95 5.56 0.09 -7.37 16 5 C -0.14 -1.47 1.03 -156.00 -0.16 -1.63 16 6 C 0.54 6.99 6.73 -10.98 -0.07 6.92 16 7 O -0.53 -8.19 15.72 5.56 0.09 -8.11 16 8 N -0.69 -9.18 5.34 -53.88 -0.29 -9.47 16 9 C 0.07 0.95 6.15 -68.01 -0.42 0.53 16 10 H 0.13 1.98 7.39 -51.93 -0.38 1.59 16 11 C -0.18 -2.64 9.86 -26.79 -0.26 -2.90 16 12 C -0.09 -1.55 1.94 -154.49 -0.30 -1.85 16 13 C -0.10 -1.68 5.83 -26.46 -0.15 -1.83 16 14 C 0.15 3.11 6.51 -3.68 -0.02 3.09 16 15 N -0.59 -14.55 2.90 -172.27 -0.50 -15.05 16 16 C -0.26 -7.03 9.48 -15.06 -0.14 -7.17 16 17 H 0.06 1.67 7.88 -52.48 -0.41 1.25 16 18 C 0.01 0.23 4.87 -17.43 -0.08 0.14 16 19 N -0.90 -25.94 11.55 55.49 0.64 -25.30 16 20 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.18 4.15 5.37 -3.68 -0.02 4.13 16 25 C -0.11 -1.95 5.37 -26.46 -0.14 -2.09 16 26 C -0.11 -1.11 7.10 -25.82 -0.18 -1.30 16 27 C -0.14 -1.15 7.81 -25.82 -0.20 -1.35 16 28 C -0.10 -0.88 6.89 -25.92 -0.18 -1.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.41 2.91 8.83 -40.82 -0.36 2.55 16 33 H 0.40 5.33 7.12 -40.82 -0.29 5.04 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 0.79 8.10 -51.93 -0.42 0.36 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.08 2.10 6.31 -51.93 -0.33 1.77 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.04 0.72 6.75 -51.93 -0.35 0.37 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 46 H 0.09 1.02 7.34 -51.93 -0.38 0.63 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 50 H 0.10 0.95 7.72 -51.93 -0.40 0.55 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -32.24 399.61 -9.51 -41.74 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.37 Total: 6.78 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.78 Total: 0.97 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.53 Total: -56.57 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.18 Total: -15.47 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.24 -9.51 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752430477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.281 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds