Wall clock time and date at job start Tue Mar 31 2020 18:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99717 * 2 1 4 4 O 1.21280 * 119.99984 * 4.58483 * 3 2 1 5 5 C 1.50695 * 119.99826 * 184.58319 * 3 2 1 6 6 C 1.50701 * 112.85129 * 66.15518 * 5 3 2 7 7 O 1.21280 * 120.00119 * 245.85583 * 6 5 3 8 8 N 1.34781 * 119.99938 * 65.85648 * 6 5 3 9 9 C 1.46495 * 119.99602 * 184.33556 * 8 6 5 10 10 H 1.08999 * 115.56979 * 350.70805 * 9 8 6 11 11 C 1.53034 * 117.50026 * 136.41663 * 9 8 6 12 12 C 1.52819 * 117.50187 * 204.99984 * 9 8 6 13 13 C 1.53188 * 117.71711 * 144.90185 * 12 9 8 14 14 C 1.53344 * 108.76394 * 158.87715 * 13 12 9 15 15 N 1.46843 * 108.81978 * 51.31061 * 14 13 12 16 16 C 1.36933 * 120.38390 * 122.82396 * 15 14 13 17 17 H 1.08004 * 120.00112 * 326.04106 * 16 15 14 18 18 C 1.38811 * 120.00295 * 146.03823 * 16 15 14 19 19 N 1.31618 * 119.99554 * 343.47570 * 18 16 15 20 20 Si 1.86790 * 120.00382 * 163.47841 * 18 16 15 21 21 H 1.48501 * 109.46998 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47585 * 120.00186 * 20 18 16 23 23 H 1.48503 * 109.47226 * 240.00088 * 20 18 16 24 24 C 1.46841 * 119.23559 * 303.10491 * 15 14 13 25 25 C 1.53184 * 117.71251 * 0.13537 * 12 9 8 26 26 C 1.53788 * 113.61241 * 197.34753 * 5 3 2 27 27 C 1.53960 * 87.01675 * 89.23194 * 26 5 3 28 28 C 1.53782 * 113.61545 * 294.95601 * 5 3 2 29 29 H 1.09000 * 109.47590 * 299.99645 * 1 2 3 30 30 H 1.08995 * 109.47271 * 60.00681 * 1 2 3 31 31 H 1.09008 * 109.46578 * 180.02562 * 1 2 3 32 32 H 0.96994 * 120.00430 * 179.97438 * 2 1 3 33 33 H 0.97001 * 119.99676 * 4.33531 * 8 6 5 34 34 H 1.08999 * 117.50836 * 0.02562 * 11 9 8 35 35 H 1.09006 * 117.52872 * 214.94378 * 11 9 8 36 36 H 1.08995 * 109.58320 * 39.09192 * 13 12 9 37 37 H 1.08996 * 109.58472 * 278.66535 * 13 12 9 38 38 H 1.08995 * 109.58532 * 291.50586 * 14 13 12 39 39 H 1.09003 * 109.68822 * 171.17406 * 14 13 12 40 40 H 0.97003 * 120.00234 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.57871 * 176.69462 * 24 15 14 42 42 H 1.09004 * 109.57518 * 297.09197 * 24 15 14 43 43 H 1.09004 * 109.58937 * 320.90848 * 25 12 9 44 44 H 1.09005 * 109.58397 * 81.33697 * 25 12 9 45 45 H 1.09001 * 113.61514 * 203.74657 * 26 5 3 46 46 H 1.09001 * 113.61600 * 334.65578 * 26 5 3 47 47 H 1.09000 * 113.53303 * 270.80573 * 27 26 5 48 48 H 1.08996 * 113.74337 * 139.94830 * 27 26 5 49 49 H 1.08996 * 113.61551 * 25.34643 * 28 5 3 50 50 H 1.08998 * 113.61209 * 156.17095 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5353 2.2159 0.0840 5 6 3.6421 1.1694 -0.1043 6 6 4.1373 0.6600 -1.4333 7 8 4.7678 -0.3745 -1.4896 8 7 3.8795 1.3541 -2.5595 9 6 4.2775 0.8123 -3.8611 10 1 4.9124 -0.0732 -3.8279 11 6 3.2698 0.9166 -5.0081 12 6 4.5124 1.8066 -4.9975 13 6 5.6229 1.4893 -6.0038 14 6 5.3561 2.2711 -7.2957 15 7 5.1407 3.6839 -6.9586 16 6 5.9263 4.6567 -7.5168 17 1 6.9653 4.4547 -7.7314 18 6 5.3873 5.9026 -7.8069 19 7 4.0814 6.0589 -7.8579 20 14 6.5152 7.3572 -8.1249 21 1 7.9300 6.9213 -8.0083 22 1 6.2701 7.8843 -9.4914 23 1 6.2422 8.4227 -7.1271 24 6 4.0772 4.0411 -6.0111 25 6 4.3180 3.2953 -4.6931 26 6 4.2876 2.4974 0.3256 27 6 4.3362 1.9193 1.7518 28 6 4.3443 0.5252 1.1027 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.9500 -0.8400 0.0004 33 1 3.4305 2.2124 -2.5082 34 1 2.3109 1.3888 -4.7943 35 1 3.2415 0.1001 -5.7297 36 1 5.6277 0.4206 -6.2177 37 1 6.5867 1.7856 -5.5898 38 1 4.4680 1.8732 -7.7867 39 1 6.2133 2.1814 -7.9630 40 1 3.7047 6.9296 -8.0602 41 1 4.0943 5.1159 -5.8311 42 1 3.1097 3.7530 -6.4224 43 1 3.4570 3.4248 -4.0373 44 1 5.2116 3.6888 -4.2084 45 1 5.2720 2.6659 -0.1109 46 1 3.6257 3.3575 0.2245 47 1 3.4386 2.1242 2.3353 48 1 5.2540 2.1557 2.2901 49 1 3.7282 -0.2045 1.6280 50 1 5.3437 0.1523 0.8786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752430477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:48 Heat of formation + Delta-G solvation = -28.784532 kcal Electronic energy + Delta-G solvation = -30159.113348 eV Core-core repulsion = 26187.244518 eV Total energy + Delta-G solvation = -3971.868831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.35013 -40.71910 -39.65709 -38.14348 -37.08818 -35.75010 -34.59119 -33.26543 -31.79248 -30.09506 -29.32719 -27.22778 -26.49395 -26.22948 -24.11717 -23.59566 -22.84975 -22.53983 -21.68724 -20.44036 -19.87838 -19.24451 -18.30821 -17.43117 -17.37719 -17.10799 -16.86293 -16.36256 -16.00411 -15.75861 -15.54770 -15.48018 -15.35212 -15.00718 -14.73345 -14.49001 -14.19602 -13.89792 -13.79644 -13.54233 -13.38716 -13.23971 -13.09198 -13.04313 -12.93429 -12.65279 -12.55758 -12.51165 -12.32765 -12.02807 -11.99195 -11.82664 -11.50730 -11.38910 -11.28376 -11.14507 -10.87053 -10.67352 -10.52511 -10.25273 -9.73627 -8.57180 -7.87757 -5.39502 1.14136 1.41100 1.44538 1.46950 1.57391 1.96362 2.07083 2.50198 2.88714 3.25819 3.27705 3.37442 3.54233 3.60759 3.63513 3.74155 3.78560 3.82760 3.95727 4.10409 4.29288 4.43199 4.51276 4.57587 4.59046 4.63120 4.69558 4.75753 4.81511 4.86263 4.89583 4.90102 4.92085 4.96296 5.00417 5.01126 5.05801 5.20273 5.27277 5.28414 5.31770 5.35438 5.41929 5.49066 5.65968 5.71951 6.28345 6.35309 6.42466 6.96682 7.02701 7.16336 7.86368 8.40755 9.16966 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.002827 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.294219 B = 9903.193313 C =10214.671532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.719 5.719 3 C 0.543 3.457 4 O -0.558 6.558 5 C -0.138 4.138 6 C 0.541 3.459 7 O -0.555 6.555 8 N -0.688 5.688 9 C 0.087 3.913 10 H 0.136 0.864 11 C -0.170 4.170 12 C -0.116 4.116 13 C -0.085 4.085 14 C 0.146 3.854 15 N -0.607 5.607 16 C -0.267 4.267 17 H 0.060 0.940 18 C -0.043 4.043 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.186 3.814 25 C -0.089 4.089 26 C -0.118 4.118 27 C -0.131 4.131 28 C -0.095 4.095 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.415 0.585 33 H 0.406 0.594 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.250 0.750 41 H 0.044 0.956 42 H -0.001 1.001 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 -15.497 19.725 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.328 3.672 4 O -0.436 6.436 5 C -0.145 4.145 6 C 0.328 3.672 7 O -0.433 6.433 8 N -0.337 5.337 9 C -0.019 4.019 10 H 0.154 0.846 11 C -0.208 4.208 12 C -0.117 4.117 13 C -0.124 4.124 14 C 0.021 3.979 15 N -0.330 5.330 16 C -0.398 4.398 17 H 0.078 0.922 18 C -0.240 4.240 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.060 3.940 25 C -0.128 4.128 26 C -0.156 4.156 27 C -0.168 4.168 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.250 0.750 33 H 0.242 0.758 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.024 -15.383 19.682 25.302 hybrid contribution 0.120 1.286 -0.761 1.499 sum -3.905 -14.096 18.921 23.916 Atomic orbital electron populations 1.21750 0.77884 1.04536 1.01860 1.45747 1.08800 1.08386 1.74102 1.19601 0.87870 0.84078 0.75654 1.90723 1.69980 1.32569 1.50350 1.22415 0.93598 1.03786 0.94687 1.20089 0.78972 0.83428 0.84753 1.90683 1.40994 1.24768 1.86858 1.45475 1.59553 1.23529 1.05132 1.21778 1.02111 0.99409 0.78571 0.84647 1.23599 0.94127 1.02562 1.00560 1.21797 0.98721 0.92408 0.98786 1.21518 0.96310 0.99791 0.94780 1.20991 0.97955 0.84271 0.94729 1.44158 1.38525 1.01725 1.48614 1.19456 0.91715 0.93144 1.35463 0.92190 1.25906 0.96669 1.01936 0.99464 1.70183 1.11237 1.23049 1.53073 0.85279 0.79127 0.79571 0.76894 1.19092 1.21781 1.21613 1.20413 0.89051 0.97160 0.87327 1.21525 1.00088 0.93192 0.98035 1.22958 1.00987 0.94044 0.97581 1.22859 1.03868 0.94709 0.95361 1.22859 1.01561 0.97686 0.91221 0.92168 0.93189 0.87075 0.74954 0.75797 0.88949 0.86694 0.89715 0.92589 0.96597 0.92882 0.94096 0.93785 0.98317 0.92015 0.92934 0.88445 0.90098 0.89816 0.88520 0.88984 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.71 127.77 1.37 2.40 16 2 N -0.72 -11.13 5.71 -484.53 -2.77 -13.90 16 3 C 0.54 11.56 6.43 87.66 0.56 12.12 16 4 O -0.56 -15.67 15.95 -3.03 -0.05 -15.72 16 5 C -0.14 -2.72 1.03 -53.15 -0.05 -2.77 16 6 C 0.54 13.10 6.73 87.66 0.59 13.69 16 7 O -0.55 -15.79 15.72 -3.03 -0.05 -15.83 16 8 N -0.69 -17.29 5.34 -442.77 -2.37 -19.66 16 9 C 0.09 2.32 6.15 44.94 0.28 2.59 16 10 H 0.14 3.64 7.39 -2.39 -0.02 3.62 16 11 C -0.17 -4.55 9.86 30.56 0.30 -4.25 16 12 C -0.12 -3.64 1.94 -52.17 -0.10 -3.74 16 13 C -0.08 -2.78 5.83 30.77 0.18 -2.60 16 14 C 0.15 6.03 6.51 86.43 0.56 6.59 16 15 N -0.61 -30.58 2.90 -698.93 -2.03 -32.61 16 16 C -0.27 -14.84 9.48 84.03 0.80 -14.04 16 17 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 18 C -0.04 -2.44 4.87 84.86 0.41 -2.03 16 19 N -0.93 -55.44 11.55 21.65 0.25 -55.19 16 20 Si 0.96 45.11 29.58 68.60 2.03 47.14 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 C 0.19 8.95 5.37 86.43 0.46 9.42 16 25 C -0.09 -3.29 5.37 30.77 0.17 -3.12 16 26 C -0.12 -2.22 7.10 31.18 0.22 -2.00 16 27 C -0.13 -1.87 7.81 31.18 0.24 -1.63 16 28 C -0.10 -1.42 6.89 31.12 0.21 -1.21 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.41 4.88 8.83 -92.71 -0.82 4.06 16 33 H 0.41 10.23 7.12 -92.71 -0.66 9.57 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 2.17 7.92 -2.39 -0.02 2.15 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.04 2.40 6.31 -2.39 -0.02 2.39 16 42 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 43 H 0.06 2.02 6.75 -2.38 -0.02 2.00 16 44 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 46 H 0.08 1.74 7.34 -2.39 -0.02 1.73 16 47 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 50 H 0.10 1.62 7.72 -2.39 -0.02 1.60 16 Total: -1.00 -70.78 399.61 0.70 -70.08 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.53 Total: 26.27 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 6.21 Total: 9.43 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.91 Total: -121.36 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.10 Total: -31.56 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.78 0.70 -70.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752430477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.299 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds