Wall clock time and date at job start Tue Mar 31 2020 18:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00416 * 2 1 4 4 C 1.50701 * 109.46752 * 293.95325 * 3 2 1 5 5 O 1.21289 * 120.00045 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99735 * 180.02562 * 4 3 2 7 7 C 1.37102 * 119.99803 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99711 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99925 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00243 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00185 * 11 9 7 13 13 H 1.48499 * 109.47115 * 209.99929 * 11 9 7 14 14 H 1.48502 * 109.46859 * 329.99720 * 11 9 7 15 15 C 1.46907 * 110.99854 * 123.95351 * 2 1 3 16 16 H 1.08998 * 109.49601 * 295.97552 * 15 2 1 17 17 C 1.53040 * 109.49989 * 56.04463 * 15 2 1 18 18 C 1.53039 * 109.53878 * 181.35077 * 17 15 2 19 19 C 1.53187 * 109.31020 * 298.63247 * 18 17 15 20 20 N 1.46930 * 108.77628 * 54.63736 * 19 18 17 21 21 C 1.34780 * 120.62704 * 126.36696 * 20 19 18 22 22 O 1.21617 * 119.99395 * 185.23362 * 21 20 19 23 23 C 1.47095 * 120.00250 * 5.23497 * 21 20 19 24 24 C 1.32993 * 119.99809 * 175.01473 * 23 21 20 25 25 C 1.51587 * 135.78145 * 179.97438 * 24 23 21 26 26 C 1.53843 * 86.85686 * 205.20937 * 25 24 23 27 27 C 1.51880 * 135.89350 * 0.07997 * 24 23 21 28 28 C 1.46924 * 118.73764 * 306.63950 * 20 19 18 29 29 H 1.09004 * 109.46806 * 296.05001 * 1 2 3 30 30 H 1.09005 * 109.47010 * 56.04349 * 1 2 3 31 31 H 1.08990 * 109.47603 * 176.04911 * 1 2 3 32 32 H 1.08995 * 109.47066 * 53.95266 * 3 2 1 33 33 H 1.09001 * 109.47108 * 173.95752 * 3 2 1 34 34 H 0.97001 * 120.00340 * 359.97438 * 6 4 3 35 35 H 0.96998 * 120.00193 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.45988 * 61.32615 * 17 15 2 37 37 H 1.09004 * 109.45578 * 301.36984 * 17 15 2 38 38 H 1.09001 * 109.49695 * 178.68386 * 18 17 15 39 39 H 1.09002 * 109.49785 * 58.58781 * 18 17 15 40 40 H 1.08999 * 109.59143 * 294.84610 * 19 18 17 41 41 H 1.09005 * 109.58618 * 174.42469 * 19 18 17 42 42 H 1.08005 * 120.00192 * 355.01619 * 23 21 20 43 43 H 1.08997 * 113.66717 * 90.69429 * 25 24 23 44 44 H 1.09003 * 113.66522 * 319.71691 * 25 24 23 45 45 H 1.08996 * 113.66082 * 89.64539 * 26 25 24 46 46 H 1.08998 * 113.65390 * 220.68088 * 26 25 24 47 47 H 1.09005 * 113.66638 * 40.32398 * 27 24 23 48 48 H 1.09000 * 113.74753 * 269.26661 * 27 24 23 49 49 H 1.08997 * 109.58533 * 173.14658 * 28 20 19 50 50 H 1.08997 * 109.58523 * 293.56782 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0190 3.3197 -1.5238 7 6 1.6924 3.9346 -2.7049 8 1 1.1294 3.3990 -3.4548 9 6 2.0858 5.2469 -2.9369 10 7 1.7724 5.8364 -4.0688 11 14 3.0603 6.1731 -1.6400 12 1 4.5124 5.9599 -1.8659 13 1 2.7528 7.6230 -1.7315 14 1 2.6903 5.6726 -0.2917 15 6 1.9954 -0.7660 1.1376 16 1 1.7056 -0.2796 2.0690 17 6 1.4262 -2.1862 1.1044 18 6 1.9475 -2.9749 2.3079 19 6 3.4749 -3.0643 2.2319 20 7 4.0230 -1.7059 2.1172 21 6 4.9659 -1.2711 2.9766 22 8 5.3429 -0.1157 2.9320 23 6 5.5390 -2.1941 3.9683 24 6 6.5382 -1.7940 4.7494 25 6 7.3712 -2.4166 5.8524 26 6 7.6057 -0.9858 6.3669 27 6 7.3396 -0.5161 4.9265 28 6 3.5193 -0.8284 1.0518 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0251 -0.0708 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3443 0.1082 34 1 2.5244 3.8010 -0.8500 35 1 2.0467 6.7526 -4.2306 36 1 1.7369 -2.6806 0.1841 37 1 0.3377 -2.1421 1.1430 38 1 1.5233 -3.9789 2.2964 39 1 1.6580 -2.4677 3.2283 40 1 3.7637 -3.6497 1.3590 41 1 3.8586 -3.5381 3.1354 42 1 5.1483 -3.1966 4.0621 43 1 8.2763 -2.9064 5.4936 44 1 6.7953 -3.0389 6.5374 45 1 6.8551 -0.6496 7.0821 46 1 8.6259 -0.8044 6.7049 47 1 6.7370 0.3902 4.8662 48 1 8.2362 -0.4710 4.3083 49 1 3.9323 0.1724 1.1770 50 1 3.8118 -1.2278 0.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752990038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:48 Heat of formation + Delta-G solvation = -6.037827 kcal Electronic energy + Delta-G solvation = -29303.986694 eV Core-core repulsion = 25333.104235 eV Total energy + Delta-G solvation = -3970.882459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54630 -39.20885 -38.51871 -37.57316 -35.77198 -33.87493 -32.59902 -31.62559 -31.56807 -29.91552 -28.29459 -26.19194 -25.81740 -25.00876 -24.05848 -23.04259 -22.14611 -20.56735 -19.58045 -19.27589 -18.19755 -18.02728 -17.66598 -16.26354 -16.17949 -15.81904 -15.32099 -15.25705 -15.03827 -14.78762 -14.54373 -14.33982 -14.30307 -13.90357 -13.40919 -13.35070 -13.01520 -12.98362 -12.82850 -12.71509 -12.35293 -12.23444 -12.08785 -11.93152 -11.62160 -11.55898 -11.42661 -11.33561 -11.11190 -10.96088 -10.92034 -10.87323 -10.54518 -10.39592 -9.93172 -9.78558 -9.52858 -9.48842 -8.75585 -8.52372 -8.13286 -7.93798 -6.26868 -3.77878 1.09026 2.75247 3.08301 3.11452 3.12846 3.19936 3.78474 3.88439 3.94917 4.08188 4.15263 4.36301 4.46464 4.62444 4.67821 4.73855 4.78045 4.80790 4.97704 5.11928 5.13783 5.23494 5.25690 5.26249 5.32523 5.36016 5.44564 5.48512 5.55299 5.60538 5.64312 5.68353 5.77786 5.80831 5.85885 5.87844 5.90661 5.94247 5.97134 6.03228 6.18284 6.23716 6.37177 6.53100 7.18399 7.25452 7.33864 7.63238 8.07373 8.19156 8.65070 8.99775 9.47488 9.88636 10.86223 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.002823 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.857299 B = 9915.876092 C =12066.539825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.511 5.511 3 C 0.037 3.963 4 C 0.455 3.545 5 O -0.559 6.559 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.878 3.122 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.072 3.928 16 H 0.040 0.960 17 C -0.115 4.115 18 C -0.133 4.133 19 C 0.105 3.895 20 N -0.608 5.608 21 C 0.552 3.448 22 O -0.541 6.541 23 C -0.205 4.205 24 C -0.059 4.059 25 C -0.109 4.109 26 C -0.142 4.142 27 C -0.108 4.108 28 C 0.115 3.885 29 H 0.014 0.986 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -20.119 22.571 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.235 5.235 3 C -0.094 4.094 4 C 0.241 3.759 5 O -0.441 6.441 6 N -0.231 5.231 7 C -0.431 4.431 8 H 0.137 0.863 9 C -0.161 4.161 10 N -0.523 5.523 11 Si 0.704 3.296 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.037 4.037 16 H 0.058 0.942 17 C -0.153 4.153 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.341 5.341 21 C 0.343 3.657 22 O -0.419 6.419 23 C -0.225 4.225 24 C -0.061 4.061 25 C -0.146 4.146 26 C -0.179 4.179 27 C -0.144 4.144 28 C -0.007 4.007 29 H 0.032 0.968 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.203 0.797 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.152 0.848 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.108 0.892 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.152 -19.936 21.380 30.348 hybrid contribution 0.346 1.201 1.660 2.078 sum 8.498 -18.736 23.040 30.888 Atomic orbital electron populations 1.22587 0.86329 1.02283 1.01479 1.61573 1.08862 1.12388 1.40680 1.21997 1.01110 0.89305 0.97022 1.19593 0.85020 0.82428 0.88880 1.90517 1.42698 1.64119 1.46785 1.42225 1.51016 1.11987 1.17890 1.19419 1.33711 0.96271 0.93744 0.86256 1.25026 0.97879 0.96507 0.96735 1.69621 1.45777 1.13584 1.23273 0.86694 0.81027 0.80422 0.81423 1.19534 1.20214 1.19494 1.21859 0.94553 0.94811 0.92486 0.94195 1.21645 1.00828 0.94296 0.98530 1.21934 0.94977 1.01096 0.99213 1.21851 0.94021 0.83213 1.02704 1.47941 1.39775 1.14669 1.31713 1.18419 0.79076 0.87474 0.80765 1.90783 1.61311 1.18552 1.71293 1.21709 1.01678 1.00144 0.98999 1.23721 0.92934 0.97824 0.91617 1.22412 0.99288 0.97482 0.95419 1.22829 1.02449 0.95687 0.96969 1.22404 0.99534 0.96904 0.95592 1.21602 0.93040 0.96037 0.90046 0.96786 0.88411 0.91618 0.93334 0.89026 0.79693 0.91665 0.90489 0.91061 0.90272 0.91604 0.90961 0.89566 0.84779 0.88077 0.90272 0.89782 0.90483 0.89184 0.88369 0.88755 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.75 60.06 0.53 0.86 16 2 N -0.51 -8.35 4.37 -236.45 -1.03 -9.38 16 3 C 0.04 0.67 5.26 -4.97 -0.03 0.64 16 4 C 0.46 10.63 7.47 -10.99 -0.08 10.54 16 5 O -0.56 -15.01 13.91 5.55 0.08 -14.93 16 6 N -0.59 -14.57 5.09 -10.96 -0.06 -14.63 16 7 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 10 N -0.88 -26.20 13.96 55.50 0.77 -25.43 16 11 Si 0.88 20.06 27.74 -169.99 -4.71 15.34 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.27 -5.69 6.52 56.52 0.37 -5.32 16 15 C 0.07 0.94 2.08 -67.81 -0.14 0.80 16 16 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 17 C -0.12 -1.17 4.85 -26.69 -0.13 -1.30 16 18 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 19 C 0.10 0.79 6.32 -3.71 -0.02 0.77 16 20 N -0.61 -6.81 2.98 -174.43 -0.52 -7.33 16 21 C 0.55 6.96 7.63 -12.67 -0.10 6.86 16 22 O -0.54 -8.77 14.51 5.26 0.08 -8.69 16 23 C -0.20 -1.90 9.33 -37.81 -0.35 -2.25 16 24 C -0.06 -0.52 6.88 -100.21 -0.69 -1.21 16 25 C -0.11 -0.63 8.04 -27.01 -0.22 -0.84 16 26 C -0.14 -0.89 8.11 -25.93 -0.21 -1.10 16 27 C -0.11 -0.97 7.12 -26.87 -0.19 -1.16 16 28 C 0.12 1.52 5.32 -3.93 -0.02 1.50 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 1.90 5.83 -51.93 -0.30 1.60 16 31 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 32 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.09 1.53 5.96 -51.93 -0.31 1.22 16 34 H 0.37 8.17 5.76 -40.82 -0.24 7.94 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.71 6.27 -51.93 -0.33 0.39 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.47 5.37 -51.93 -0.28 0.19 16 42 H 0.13 0.85 5.92 -52.48 -0.31 0.54 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 1.00 7.42 -51.93 -0.39 0.62 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 1.43 5.37 -51.93 -0.28 1.15 16 50 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -34.69 387.82 -9.42 -44.10 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.80 Total: 9.97 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.07 Total: 5.13 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.83 Total: -56.77 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.15 Total: -23.63 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.69 -9.42 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752990038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.067 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds