Wall clock time and date at job start Tue Mar 31 2020 18:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00416 * 2 1 4 4 C 1.50701 * 109.46752 * 293.95325 * 3 2 1 5 5 O 1.21289 * 120.00045 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99735 * 180.02562 * 4 3 2 7 7 C 1.37102 * 119.99803 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99711 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99925 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00243 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00185 * 11 9 7 13 13 H 1.48499 * 109.47115 * 209.99929 * 11 9 7 14 14 H 1.48502 * 109.46859 * 329.99720 * 11 9 7 15 15 C 1.46907 * 110.99854 * 123.95351 * 2 1 3 16 16 H 1.08998 * 109.49601 * 295.97552 * 15 2 1 17 17 C 1.53040 * 109.49989 * 56.04463 * 15 2 1 18 18 C 1.53039 * 109.53878 * 181.35077 * 17 15 2 19 19 C 1.53187 * 109.31020 * 298.63247 * 18 17 15 20 20 N 1.46930 * 108.77628 * 54.63736 * 19 18 17 21 21 C 1.34780 * 120.62704 * 126.36696 * 20 19 18 22 22 O 1.21617 * 119.99395 * 185.23362 * 21 20 19 23 23 C 1.47095 * 120.00250 * 5.23497 * 21 20 19 24 24 C 1.32993 * 119.99809 * 175.01473 * 23 21 20 25 25 C 1.51587 * 135.78145 * 179.97438 * 24 23 21 26 26 C 1.53843 * 86.85686 * 205.20937 * 25 24 23 27 27 C 1.51880 * 135.89350 * 0.07997 * 24 23 21 28 28 C 1.46924 * 118.73764 * 306.63950 * 20 19 18 29 29 H 1.09004 * 109.46806 * 296.05001 * 1 2 3 30 30 H 1.09005 * 109.47010 * 56.04349 * 1 2 3 31 31 H 1.08990 * 109.47603 * 176.04911 * 1 2 3 32 32 H 1.08995 * 109.47066 * 53.95266 * 3 2 1 33 33 H 1.09001 * 109.47108 * 173.95752 * 3 2 1 34 34 H 0.97001 * 120.00340 * 359.97438 * 6 4 3 35 35 H 0.96998 * 120.00193 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.45988 * 61.32615 * 17 15 2 37 37 H 1.09004 * 109.45578 * 301.36984 * 17 15 2 38 38 H 1.09001 * 109.49695 * 178.68386 * 18 17 15 39 39 H 1.09002 * 109.49785 * 58.58781 * 18 17 15 40 40 H 1.08999 * 109.59143 * 294.84610 * 19 18 17 41 41 H 1.09005 * 109.58618 * 174.42469 * 19 18 17 42 42 H 1.08005 * 120.00192 * 355.01619 * 23 21 20 43 43 H 1.08997 * 113.66717 * 90.69429 * 25 24 23 44 44 H 1.09003 * 113.66522 * 319.71691 * 25 24 23 45 45 H 1.08996 * 113.66082 * 89.64539 * 26 25 24 46 46 H 1.08998 * 113.65390 * 220.68088 * 26 25 24 47 47 H 1.09005 * 113.66638 * 40.32398 * 27 24 23 48 48 H 1.09000 * 113.74753 * 269.26661 * 27 24 23 49 49 H 1.08997 * 109.58533 * 173.14658 * 28 20 19 50 50 H 1.08997 * 109.58523 * 293.56782 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0190 3.3197 -1.5238 7 6 1.6924 3.9346 -2.7049 8 1 1.1294 3.3990 -3.4548 9 6 2.0858 5.2469 -2.9369 10 7 1.7724 5.8364 -4.0688 11 14 3.0603 6.1731 -1.6400 12 1 4.5124 5.9599 -1.8659 13 1 2.7528 7.6230 -1.7315 14 1 2.6903 5.6726 -0.2917 15 6 1.9954 -0.7660 1.1376 16 1 1.7056 -0.2796 2.0690 17 6 1.4262 -2.1862 1.1044 18 6 1.9475 -2.9749 2.3079 19 6 3.4749 -3.0643 2.2319 20 7 4.0230 -1.7059 2.1172 21 6 4.9659 -1.2711 2.9766 22 8 5.3429 -0.1157 2.9320 23 6 5.5390 -2.1941 3.9683 24 6 6.5382 -1.7940 4.7494 25 6 7.3712 -2.4166 5.8524 26 6 7.6057 -0.9858 6.3669 27 6 7.3396 -0.5161 4.9265 28 6 3.5193 -0.8284 1.0518 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0251 -0.0708 32 1 1.5612 1.9273 0.8309 33 1 3.0798 1.3443 0.1082 34 1 2.5244 3.8010 -0.8500 35 1 2.0467 6.7526 -4.2306 36 1 1.7369 -2.6806 0.1841 37 1 0.3377 -2.1421 1.1430 38 1 1.5233 -3.9789 2.2964 39 1 1.6580 -2.4677 3.2283 40 1 3.7637 -3.6497 1.3590 41 1 3.8586 -3.5381 3.1354 42 1 5.1483 -3.1966 4.0621 43 1 8.2763 -2.9064 5.4936 44 1 6.7953 -3.0389 6.5374 45 1 6.8551 -0.6496 7.0821 46 1 8.6259 -0.8044 6.7049 47 1 6.7370 0.3902 4.8662 48 1 8.2362 -0.4710 4.3083 49 1 3.9323 0.1724 1.1770 50 1 3.8118 -1.2278 0.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752990038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:47 Heat of formation + Delta-G solvation = -30.952969 kcal Electronic energy + Delta-G solvation = -29305.067096 eV Core-core repulsion = 25333.104235 eV Total energy + Delta-G solvation = -3971.962861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47855 -40.55203 -39.57682 -38.68813 -36.95118 -35.91296 -33.79767 -33.47657 -32.35480 -30.82839 -29.75657 -27.15498 -26.73724 -26.16037 -25.51390 -23.74855 -23.14178 -21.49143 -21.26949 -20.41720 -20.18849 -18.75368 -18.52694 -17.78548 -17.12566 -16.88827 -16.56750 -16.40347 -16.25380 -15.95049 -15.75810 -15.49115 -15.22410 -15.16989 -14.91907 -14.64023 -14.38880 -14.13239 -14.05398 -13.74146 -13.53500 -13.34830 -13.09313 -12.88503 -12.82175 -12.67849 -12.54791 -12.45068 -12.41885 -12.03634 -11.99835 -11.82663 -11.63087 -11.52753 -11.50372 -11.40065 -10.64053 -10.40678 -10.26124 -10.22152 -9.61110 -9.30975 -8.44065 -6.04003 0.37375 1.26990 1.31425 1.39436 1.88139 1.91338 2.18953 2.26970 2.57398 3.10706 3.18660 3.28956 3.53221 3.65487 3.82999 3.85048 3.91441 4.02900 4.08074 4.14200 4.23505 4.26366 4.27491 4.31041 4.49958 4.56852 4.59599 4.60974 4.64972 4.75144 4.76154 4.81238 4.90230 4.94199 4.99570 5.03330 5.05044 5.06899 5.22591 5.25611 5.35446 5.36966 5.46165 5.50678 5.68271 5.85335 5.95584 6.12873 6.44927 6.56475 6.85085 7.17759 7.36134 7.92003 8.73356 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.002823 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.857299 B = 9915.876092 C =12066.539825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.528 5.528 3 C 0.050 3.950 4 C 0.456 3.544 5 O -0.598 6.598 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.060 0.940 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.958 3.042 12 H -0.259 1.259 13 H -0.270 1.270 14 H -0.239 1.239 15 C 0.079 3.921 16 H 0.038 0.962 17 C -0.113 4.113 18 C -0.125 4.125 19 C 0.098 3.902 20 N -0.605 5.605 21 C 0.540 3.460 22 O -0.590 6.590 23 C -0.213 4.213 24 C -0.066 4.066 25 C -0.093 4.093 26 C -0.135 4.135 27 C -0.124 4.124 28 C 0.118 3.882 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.387 0.613 35 H 0.279 0.721 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.169 0.831 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.098 0.902 49 H 0.069 0.931 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.644 -22.519 26.686 36.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.082 4.082 4 C 0.243 3.757 5 O -0.482 6.482 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.078 0.922 9 C -0.210 4.210 10 N -0.572 5.572 11 Si 0.779 3.221 12 H -0.183 1.183 13 H -0.195 1.195 14 H -0.162 1.162 15 C -0.029 4.029 16 H 0.056 0.944 17 C -0.151 4.151 18 C -0.163 4.163 19 C -0.023 4.023 20 N -0.337 5.337 21 C 0.333 3.667 22 O -0.473 6.473 23 C -0.233 4.233 24 C -0.068 4.068 25 C -0.129 4.129 26 C -0.172 4.172 27 C -0.161 4.161 28 C -0.005 4.005 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.222 0.778 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.187 0.813 43 H 0.137 0.863 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.076 0.924 48 H 0.116 0.884 49 H 0.088 0.912 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.553 -22.394 25.514 35.266 hybrid contribution -0.144 1.878 0.281 1.904 sum 9.409 -20.516 25.795 34.276 Atomic orbital electron populations 1.22471 0.86147 1.03225 1.00274 1.61544 1.09219 1.11508 1.42977 1.21854 1.02181 0.90276 0.93846 1.20651 0.83052 0.81795 0.90179 1.90503 1.43968 1.64978 1.48765 1.42084 1.51793 1.12631 1.17068 1.19004 1.34729 0.97028 0.94609 0.92170 1.26013 0.98601 0.96941 0.99487 1.69785 1.47126 1.14386 1.25886 0.85451 0.79153 0.78498 0.79008 1.18325 1.19527 1.16233 1.21894 0.94265 0.96007 0.90769 0.94409 1.21665 1.01051 0.92489 0.99883 1.21916 0.94722 1.02165 0.97502 1.22183 0.94113 0.81273 1.04687 1.48044 1.39366 1.15721 1.30594 1.19114 0.78885 0.87448 0.81234 1.90758 1.62938 1.20786 1.72793 1.21814 1.02201 1.00876 0.98402 1.24154 0.92700 0.98016 0.91926 1.22431 0.99344 0.97156 0.93980 1.22821 1.03396 0.96004 0.94991 1.22503 0.99386 0.96162 0.98071 1.21384 0.93187 0.95423 0.90545 0.95307 0.92567 0.89200 0.91323 0.87571 0.77841 0.91094 0.90948 0.90600 0.87212 0.91667 0.89901 0.86650 0.81346 0.86349 0.88267 0.89785 0.88947 0.92359 0.88425 0.91214 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 8.75 127.69 1.12 1.94 16 2 N -0.53 -17.07 4.37 -902.00 -3.94 -21.01 16 3 C 0.05 1.78 5.26 85.56 0.45 2.23 16 4 C 0.46 21.93 7.47 87.66 0.66 22.58 16 5 O -0.60 -33.86 13.91 -3.06 -0.04 -33.91 16 6 N -0.59 -29.91 5.09 -306.99 -1.56 -31.47 16 7 C -0.32 -19.65 10.16 84.04 0.85 -18.79 16 8 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 9 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 10 N -0.93 -57.36 13.96 21.66 0.30 -57.06 16 11 Si 0.96 41.19 27.74 68.60 1.90 43.09 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.24 -8.99 6.52 99.48 0.65 -8.34 16 15 C 0.08 1.96 2.08 44.85 0.09 2.06 16 16 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 17 C -0.11 -2.02 4.85 30.62 0.15 -1.87 16 18 C -0.12 -1.39 6.08 30.67 0.19 -1.20 16 19 C 0.10 1.14 6.32 86.36 0.55 1.69 16 20 N -0.61 -12.62 2.98 -824.01 -2.45 -15.08 16 21 C 0.54 13.16 7.63 86.57 0.66 13.82 16 22 O -0.59 -19.64 14.51 -4.09 -0.06 -19.70 16 23 C -0.21 -3.43 9.33 23.43 0.22 -3.21 16 24 C -0.07 -1.02 6.88 -16.99 -0.12 -1.14 16 25 C -0.09 -0.73 8.04 30.41 0.24 -0.49 16 26 C -0.13 -1.40 8.11 31.12 0.25 -1.14 16 27 C -0.12 -2.18 7.12 30.50 0.22 -1.96 16 28 C 0.12 3.07 5.32 86.22 0.46 3.53 16 29 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 2.26 5.83 -2.38 -0.01 2.24 16 31 H 0.09 2.33 6.21 -2.39 -0.01 2.31 16 32 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 33 H 0.11 3.53 5.96 -2.39 -0.01 3.51 16 34 H 0.39 16.73 5.76 -92.71 -0.53 16.20 16 35 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.30 6.27 -2.38 -0.01 1.29 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.12 0.69 5.37 -2.38 -0.01 0.68 16 42 H 0.17 1.38 5.92 -2.91 -0.02 1.36 16 43 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 1.38 7.42 -2.38 -0.02 1.36 16 48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.07 2.15 5.37 -2.39 -0.01 2.14 16 50 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -83.26 387.82 0.96 -82.30 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.37 Total: 34.98 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.45 Total: 17.85 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -7.66 Total: -124.62 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.10 Total: -53.61 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.90 Total: 43.09 kcal Total: -83.26 0.96 -82.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752990038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.350 kcal (2) G-P(sol) polarization free energy of solvation -83.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds