Wall clock time and date at job start Tue Mar 31 2020 18:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99816 * 2 1 4 4 C 1.50709 * 109.47389 * 293.95250 * 3 2 1 5 5 O 1.21292 * 119.99500 * 0.02562 * 4 3 2 6 6 N 1.34766 * 120.00098 * 179.97438 * 4 3 2 7 7 C 1.37107 * 120.00118 * 179.97438 * 6 4 3 8 8 H 1.08007 * 119.99473 * 359.72966 * 7 6 4 9 9 C 1.38946 * 120.00267 * 179.72647 * 7 6 4 10 10 N 1.31411 * 120.00237 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99975 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47116 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47179 * 119.99875 * 11 9 7 14 14 H 1.48502 * 109.46998 * 240.00505 * 11 9 7 15 15 C 1.46899 * 111.00202 * 123.95086 * 2 1 3 16 16 H 1.09001 * 109.49568 * 186.04265 * 15 2 1 17 17 C 1.53040 * 109.49258 * 65.98535 * 15 2 1 18 18 C 1.53038 * 109.53703 * 178.71623 * 17 15 2 19 19 C 1.53196 * 109.34122 * 61.31277 * 18 17 15 20 20 N 1.46922 * 108.77507 * 305.38213 * 19 18 17 21 21 C 1.34776 * 120.63056 * 233.58452 * 20 19 18 22 22 O 1.21615 * 119.99818 * 174.78905 * 21 20 19 23 23 C 1.47096 * 120.00108 * 354.78749 * 21 20 19 24 24 C 1.32989 * 120.00063 * 184.98601 * 23 21 20 25 25 C 1.51403 * 136.31903 * 359.62029 * 24 23 21 26 26 C 1.53370 * 87.52289 * 206.06457 * 25 24 23 27 27 C 1.51410 * 136.31439 * 180.02562 * 24 23 21 28 28 C 1.46933 * 118.73790 * 53.60898 * 20 19 18 29 29 H 1.09003 * 109.47197 * 60.00108 * 1 2 3 30 30 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47601 * 300.00071 * 1 2 3 32 32 H 1.09001 * 109.47150 * 173.95470 * 3 2 1 33 33 H 1.08997 * 109.47537 * 53.95553 * 3 2 1 34 34 H 0.96999 * 120.00322 * 359.73493 * 6 4 3 35 35 H 0.96996 * 120.00376 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46088 * 298.69809 * 17 15 2 37 37 H 1.08999 * 109.46274 * 58.66644 * 17 15 2 38 38 H 1.09002 * 109.46988 * 301.36438 * 18 17 15 39 39 H 1.09001 * 109.52445 * 181.29859 * 18 17 15 40 40 H 1.08995 * 109.58521 * 185.59142 * 19 18 17 41 41 H 1.09004 * 109.70209 * 65.23903 * 19 18 17 42 42 H 1.08006 * 119.99864 * 4.97798 * 23 21 20 43 43 H 1.09000 * 113.56082 * 320.65075 * 25 24 23 44 44 H 1.09000 * 113.55609 * 91.37925 * 25 24 23 45 45 H 1.09005 * 113.97209 * 220.29605 * 26 25 24 46 46 H 1.08998 * 113.60228 * 88.79461 * 26 25 24 47 47 H 1.08994 * 113.56012 * 268.61966 * 27 24 23 48 48 H 1.08995 * 113.56149 * 39.28472 * 27 24 23 49 49 H 1.09003 * 109.58293 * 186.60178 * 28 20 19 50 50 H 1.08997 * 109.58517 * 66.17836 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0046 1.4456 -2.1408 6 7 2.0179 3.3202 -1.5233 7 6 1.6922 3.9348 -2.7048 8 1 1.1340 3.3972 -3.4572 9 6 2.0801 5.2491 -2.9343 10 7 2.7596 5.9030 -2.0191 11 14 1.6357 6.0867 -4.5439 12 1 0.8738 5.1420 -5.3996 13 1 0.8024 7.2838 -4.2653 14 1 2.8773 6.5001 -5.2460 15 6 1.9955 -0.7659 1.1376 16 1 3.0798 -0.6613 1.1759 17 6 1.6304 -2.2428 0.9717 18 6 2.2058 -3.0467 2.1399 19 6 1.5969 -2.5418 3.4519 20 7 1.8187 -1.0926 3.5493 21 6 2.4091 -0.5599 4.6375 22 8 2.6730 0.6269 4.6664 23 6 2.7342 -1.4140 5.7901 24 6 3.2251 -0.8728 6.9013 25 6 3.5917 0.5187 7.3720 26 6 4.5876 -0.1411 8.3338 27 6 3.6737 -1.3741 8.2577 28 6 1.3841 -0.2352 2.4381 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.0797 1.3445 0.1082 33 1 1.5611 1.9274 0.8309 34 1 2.5196 3.8028 -0.8478 35 1 3.0308 6.8204 -2.1795 36 1 0.5457 -2.3494 0.9576 37 1 2.0440 -2.6161 0.0348 38 1 3.2882 -2.9211 2.1691 39 1 1.9653 -4.1018 2.0095 40 1 2.0759 -3.0422 4.2934 41 1 0.5269 -2.7493 3.4642 42 1 2.5740 -2.4807 5.7341 43 1 4.0685 1.1271 6.6035 44 1 2.7764 1.0368 7.8768 45 1 4.6228 0.3208 9.3205 46 1 5.5751 -0.2978 7.8998 47 1 2.8809 -1.3756 9.0057 48 1 4.2167 -2.3182 8.2155 49 1 1.7228 0.7864 2.6108 50 1 0.2968 -0.2545 2.3653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752990039.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:50 Heat of formation + Delta-G solvation = -35.670687 kcal Electronic energy + Delta-G solvation = -29225.722881 eV Core-core repulsion = 25253.555444 eV Total energy + Delta-G solvation = -3972.167437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54881 -40.47458 -39.63429 -38.74618 -36.89017 -35.86474 -33.53379 -33.28304 -32.22435 -30.76405 -29.31477 -27.09460 -26.81363 -26.60889 -25.65804 -23.95503 -23.16245 -21.46205 -20.98514 -20.22445 -19.85951 -18.73808 -18.50067 -17.82320 -17.10153 -16.72529 -16.60029 -16.40926 -16.35056 -16.01570 -15.77237 -15.41835 -15.32252 -15.19166 -15.05961 -14.41883 -14.22402 -14.09761 -13.86868 -13.60085 -13.38496 -13.34450 -13.05718 -12.92746 -12.71980 -12.67756 -12.58993 -12.42241 -12.31645 -12.11887 -12.05297 -11.80510 -11.66119 -11.53265 -11.49474 -11.44364 -10.65121 -10.34650 -10.24558 -10.03352 -9.85550 -9.06367 -8.48083 -5.97588 0.35641 1.35149 1.39771 1.54902 1.91706 2.01354 2.25407 2.26862 2.71305 3.17697 3.26387 3.36425 3.54361 3.70235 3.79126 3.82951 3.93496 4.04471 4.09237 4.16446 4.23864 4.24443 4.28907 4.43133 4.49205 4.54349 4.55253 4.59711 4.64482 4.73283 4.73894 4.83565 4.87546 4.89419 4.95035 5.03653 5.08812 5.15433 5.24607 5.29214 5.34715 5.36445 5.40043 5.44576 5.67060 5.84205 6.02313 6.16351 6.43254 6.57320 7.10230 7.16830 7.52747 8.07851 8.69848 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.002417 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.310248 B =11582.140683 C =13263.453240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.056 3.944 4 C 0.445 3.555 5 O -0.609 6.609 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.082 0.918 9 C -0.017 4.017 10 N -0.924 5.924 11 Si 0.997 3.003 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.270 1.270 15 C 0.078 3.922 16 H 0.072 0.928 17 C -0.107 4.107 18 C -0.125 4.125 19 C 0.100 3.900 20 N -0.604 5.604 21 C 0.538 3.462 22 O -0.594 6.594 23 C -0.211 4.211 24 C -0.068 4.068 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.091 4.091 28 C 0.084 3.916 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.171 0.829 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -21.107 22.836 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.242 5.242 3 C -0.075 4.075 4 C 0.232 3.768 5 O -0.495 6.495 6 N -0.213 5.213 7 C -0.460 4.460 8 H 0.100 0.900 9 C -0.216 4.216 10 N -0.565 5.565 11 Si 0.820 3.180 12 H -0.195 1.195 13 H -0.196 1.196 14 H -0.196 1.196 15 C -0.031 4.031 16 H 0.090 0.910 17 C -0.145 4.145 18 C -0.164 4.164 19 C -0.021 4.021 20 N -0.336 5.336 21 C 0.331 3.669 22 O -0.476 6.476 23 C -0.231 4.231 24 C -0.070 4.070 25 C -0.163 4.163 26 C -0.173 4.173 27 C -0.127 4.127 28 C -0.041 4.041 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.188 0.812 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.138 0.862 48 H 0.117 0.883 49 H 0.079 0.921 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.675 -20.943 21.825 30.255 hybrid contribution -0.106 1.894 -0.176 1.905 sum 0.569 -19.048 21.649 28.842 Atomic orbital electron populations 1.22523 0.86626 1.02909 1.00530 1.61873 1.09219 1.11613 1.41490 1.21725 1.01481 0.90200 0.94088 1.20586 0.83815 0.82277 0.90130 1.90448 1.44956 1.65279 1.48793 1.41974 1.50170 1.11533 1.17644 1.19726 1.34584 0.96250 0.95420 0.90009 1.26121 0.96259 0.96647 1.02597 1.69700 1.38447 1.12536 1.35800 0.84821 0.78272 0.77849 0.77072 1.19537 1.19604 1.19568 1.22157 0.99101 0.95602 0.86282 0.90993 1.21569 1.01904 0.91354 0.99660 1.21913 1.00584 1.01038 0.92839 1.22188 1.02488 0.77586 0.99871 1.48054 1.59254 1.09233 1.17049 1.19168 0.76698 0.87425 0.83647 1.90767 1.55489 1.18718 1.82646 1.21782 1.07937 1.00986 0.92368 1.23968 0.88564 0.99013 0.95482 1.22371 0.99865 0.95045 0.99014 1.22721 0.97379 0.96892 1.00261 1.22363 0.99313 0.99371 0.91657 1.22225 0.99738 0.95162 0.86972 0.92371 0.89111 0.95420 0.88432 0.92493 0.77304 0.91322 0.90702 0.91114 0.91850 0.87125 0.86726 0.89605 0.81188 0.92753 0.88346 0.88667 0.89838 0.86231 0.88346 0.92119 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 8.33 127.69 1.06 1.77 16 2 N -0.52 -17.76 4.45 -901.15 -4.01 -21.77 16 3 C 0.06 2.21 5.03 85.56 0.43 2.64 16 4 C 0.44 22.48 7.51 87.66 0.66 23.14 16 5 O -0.61 -34.51 13.88 -3.07 -0.04 -34.55 16 6 N -0.58 -31.40 5.29 -306.98 -1.62 -33.02 16 7 C -0.33 -19.46 9.68 84.04 0.81 -18.64 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 10 N -0.92 -52.17 13.05 21.66 0.28 -51.89 16 11 Si 1.00 44.34 29.55 68.60 2.03 46.36 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 C 0.08 2.06 2.34 44.99 0.11 2.17 16 16 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 17 C -0.11 -2.05 5.07 30.62 0.16 -1.90 16 18 C -0.13 -1.54 6.08 30.67 0.19 -1.35 16 19 C 0.10 1.19 6.32 86.36 0.55 1.74 16 20 N -0.60 -13.13 2.97 -823.18 -2.45 -15.58 16 21 C 0.54 13.90 7.63 86.57 0.66 14.56 16 22 O -0.59 -21.10 14.54 -4.08 -0.06 -21.16 16 23 C -0.21 -3.63 9.33 23.43 0.22 -3.41 16 24 C -0.07 -1.14 6.93 -17.17 -0.12 -1.26 16 25 C -0.13 -2.38 7.04 30.05 0.21 -2.17 16 26 C -0.14 -1.56 8.17 30.94 0.25 -1.30 16 27 C -0.09 -0.79 7.96 30.16 0.24 -0.55 16 28 C 0.08 2.22 5.02 86.36 0.43 2.66 16 29 H 0.06 2.39 5.88 -2.39 -0.01 2.37 16 30 H 0.09 2.38 6.33 -2.39 -0.02 2.37 16 31 H 0.03 0.83 6.34 -2.39 -0.02 0.82 16 32 H 0.10 3.61 7.93 -2.39 -0.02 3.59 16 33 H 0.06 2.15 7.20 -2.39 -0.02 2.13 16 34 H 0.39 20.82 7.90 -92.71 -0.73 20.09 16 35 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.07 1.33 6.53 -2.39 -0.02 1.31 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.76 5.37 -2.39 -0.01 0.74 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.17 1.53 5.92 -2.91 -0.02 1.51 16 43 H 0.05 1.40 7.41 -2.39 -0.02 1.38 16 44 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 45 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.06 2.01 6.04 -2.39 -0.01 2.00 16 50 H 0.08 1.94 6.13 -2.39 -0.01 1.92 16 Total: -1.00 -77.98 388.64 0.68 -77.30 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.23 Total: 36.71 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.32 Total: 17.60 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -7.80 Total: -122.27 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.10 Total: -55.71 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.98 0.68 -77.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752990039.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.631 kcal (2) G-P(sol) polarization free energy of solvation -77.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds