Wall clock time and date at job start Tue Mar 31 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 120.00389 * 2 1 4 4 O 1.21287 * 119.99974 * 5.36049 * 3 2 1 5 5 C 1.50704 * 120.00212 * 185.36180 * 3 2 1 6 6 H 1.09001 * 109.26652 * 39.95162 * 5 3 2 7 7 C 1.52872 * 109.26688 * 280.48482 * 5 3 2 8 8 C 1.50792 * 109.73413 * 185.94502 * 7 5 3 9 9 C 1.52874 * 109.72007 * 72.78487 * 8 7 5 10 10 C 1.52708 * 110.15413 * 306.58124 * 9 8 7 11 11 H 1.09008 * 115.39124 * 231.21494 * 10 9 8 12 12 C 1.53651 * 115.14927 * 89.81468 * 10 9 8 13 13 C 1.52068 * 120.52451 * 21.47202 * 10 9 8 14 14 H 1.09000 * 115.92713 * 208.89457 * 13 10 9 15 15 C 1.46506 * 119.99553 * 179.97438 * 2 1 3 16 16 C 1.53505 * 114.17180 * 306.42788 * 15 2 1 17 17 N 1.47482 * 87.92984 * 87.62583 * 16 15 2 18 18 C 1.46907 * 111.00126 * 138.70480 * 17 16 15 19 19 C 1.50694 * 109.47130 * 169.99801 * 18 17 16 20 20 O 1.21287 * 120.00189 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99850 * 179.97438 * 19 18 17 22 22 C 1.37108 * 119.99990 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00041 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99732 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00156 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99451 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46846 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47582 * 299.99983 * 26 24 22 29 29 H 1.48499 * 109.47283 * 60.00774 * 26 24 22 30 30 C 1.47482 * 87.83748 * 27.01144 * 17 16 15 31 31 H 1.08995 * 109.47130 * 264.73931 * 1 2 3 32 32 H 1.08996 * 109.46631 * 24.73717 * 1 2 3 33 33 H 1.09001 * 109.47351 * 144.73425 * 1 2 3 34 34 H 1.09007 * 109.61562 * 304.57480 * 7 5 3 35 35 H 1.08995 * 109.61771 * 65.10874 * 7 5 3 36 36 H 1.08999 * 108.14839 * 313.25431 * 8 7 5 37 37 H 1.09001 * 110.08868 * 193.51049 * 8 7 5 38 38 H 1.09003 * 109.35799 * 186.36976 * 9 8 7 39 39 H 1.09005 * 109.36144 * 66.79215 * 9 8 7 40 40 H 1.09001 * 117.53694 * 140.55372 * 12 10 9 41 41 H 1.09000 * 117.53981 * 355.30070 * 12 10 9 42 42 H 1.09006 * 113.37681 * 173.34673 * 15 2 1 43 43 H 1.08998 * 113.48136 * 332.86057 * 16 15 2 44 44 H 1.09005 * 113.52926 * 202.39371 * 16 15 2 45 45 H 1.09000 * 109.46873 * 49.99277 * 18 17 16 46 46 H 1.09000 * 109.46843 * 289.99811 * 18 17 16 47 47 H 0.97004 * 119.99978 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00231 * 359.97438 * 25 24 22 49 49 H 1.08994 * 113.47458 * 87.75949 * 30 17 16 50 50 H 1.08995 * 113.47254 * 218.22432 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5365 2.2152 0.0981 5 6 3.6410 1.1699 -0.1220 6 1 3.9445 0.4135 -0.8458 7 6 4.2581 0.8422 1.2378 8 6 5.7575 0.9848 1.1641 9 6 6.1321 2.4653 1.0960 10 6 5.3810 3.1461 -0.0461 11 1 5.9995 3.7222 -0.7345 12 6 4.0142 3.7374 0.3322 13 6 4.1030 2.5371 -0.6013 14 1 3.8919 2.7463 -1.6500 15 6 2.1974 -1.2688 0.0006 16 6 1.7914 -2.2285 1.1278 17 7 0.7387 -2.7471 0.2346 18 6 0.6403 -4.2097 0.3304 19 6 -0.5926 -4.6790 -0.3979 20 8 -1.3178 -3.8744 -0.9435 21 7 -0.8889 -5.9930 -0.4438 22 6 -2.0110 -6.4200 -1.1060 23 1 -2.6576 -5.7034 -1.5904 24 6 -2.3161 -7.7748 -1.1538 25 7 -1.5296 -8.6466 -0.5639 26 14 -3.8452 -8.3564 -2.0553 27 1 -3.9442 -9.8350 -1.9592 28 1 -5.0476 -7.7393 -1.4399 29 1 -3.7598 -7.9574 -3.4832 30 6 1.5863 -2.3478 -0.9043 31 1 -0.3633 -0.0942 1.0233 32 1 -0.3632 0.9334 -0.4300 33 1 -0.3634 -0.8391 -0.5933 34 1 3.8869 1.5422 1.9864 35 1 3.9951 -0.1763 1.5231 36 1 6.1028 0.4780 0.2630 37 1 6.2203 0.5300 2.0399 38 1 7.2052 2.5592 0.9292 39 1 5.8715 2.9478 2.0380 40 1 3.7417 4.6975 -0.1060 41 1 3.6522 3.5621 1.3453 42 1 3.2744 -1.1466 -0.1154 43 1 1.4012 -1.7215 2.0103 44 1 2.5577 -2.9652 1.3692 45 1 0.5764 -4.5016 1.3787 46 1 1.5232 -4.6634 -0.1199 47 1 -0.3083 -6.6366 -0.0083 48 1 -0.7357 -8.3446 -0.0953 49 1 2.2983 -3.1160 -1.2060 50 1 1.0222 -1.9419 -1.7440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754577461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:07 Heat of formation + Delta-G solvation = -0.974231 kcal Electronic energy + Delta-G solvation = -29616.411313 eV Core-core repulsion = 25645.748428 eV Total energy + Delta-G solvation = -3970.662885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30292 -40.15758 -38.48175 -37.86331 -34.80157 -34.20867 -33.51487 -31.64664 -31.18288 -29.92879 -27.31328 -26.10285 -25.65588 -24.91933 -23.57944 -22.92623 -21.82074 -20.92784 -19.74681 -19.27602 -18.12601 -17.94405 -17.39213 -16.76481 -16.40982 -16.03958 -15.67953 -15.36731 -15.08558 -14.51847 -14.37780 -14.30949 -14.16944 -13.74912 -13.70449 -13.51510 -13.32979 -13.05290 -12.80668 -12.56618 -12.29025 -12.20739 -11.75197 -11.66457 -11.59957 -11.44777 -11.30116 -11.21478 -11.12775 -11.01573 -10.84336 -10.69416 -10.38391 -10.21692 -9.97767 -9.87424 -9.57948 -9.54956 -8.93419 -8.66127 -8.29802 -8.04565 -6.76493 -3.89676 2.49696 2.81648 3.30032 3.34013 3.51531 3.54114 3.80214 3.85490 4.16979 4.24758 4.27018 4.29385 4.37537 4.60752 4.67042 4.67464 4.75882 4.80043 4.85259 5.05616 5.06862 5.10352 5.18327 5.20589 5.24020 5.34237 5.37809 5.48428 5.54478 5.54886 5.62084 5.64655 5.66022 5.71821 5.79954 5.81649 5.85048 5.89808 5.91793 5.98668 6.00595 6.01547 6.23845 6.35687 6.47659 6.96215 7.36844 7.79125 8.06813 8.10982 8.58994 8.79497 9.46427 9.87662 10.66963 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.002125 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.111832 B =13176.218052 C =13721.873468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.587 5.587 3 C 0.519 3.481 4 O -0.532 6.532 5 C -0.074 4.074 6 H 0.096 0.904 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.089 4.089 10 C -0.152 4.152 11 H 0.103 0.897 12 C -0.158 4.158 13 C -0.123 4.123 14 H 0.100 0.900 15 C 0.106 3.894 16 C -0.019 4.019 17 N -0.435 5.435 18 C 0.007 3.993 19 C 0.449 3.551 20 O -0.569 6.569 21 N -0.579 5.579 22 C -0.381 4.381 23 H 0.098 0.902 24 C -0.010 4.010 25 N -0.902 5.902 26 Si 1.091 2.909 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 C -0.009 4.009 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.374 0.626 48 H 0.260 0.740 49 H 0.080 0.920 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.567 17.445 4.099 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.408 6.408 5 C -0.095 4.095 6 H 0.114 0.886 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.127 4.127 10 C -0.170 4.170 11 H 0.121 0.879 12 C -0.195 4.195 13 C -0.141 4.141 14 H 0.118 0.882 15 C 0.000 4.000 16 C -0.149 4.149 17 N -0.157 5.157 18 C -0.125 4.125 19 C 0.234 3.766 20 O -0.451 6.451 21 N -0.218 5.218 22 C -0.510 4.510 23 H 0.116 0.884 24 C -0.212 4.212 25 N -0.541 5.541 26 Si 0.917 3.083 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.139 4.139 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.207 0.793 48 H 0.072 0.928 49 H 0.098 0.902 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.087 17.410 3.418 23.950 hybrid contribution 1.956 0.334 0.625 2.080 sum 18.042 17.744 4.043 25.627 Atomic orbital electron populations 1.21731 0.77674 1.03434 1.02603 1.47476 1.07539 1.04341 1.72502 1.20560 0.89621 0.83134 0.76028 1.90689 1.70198 1.30945 1.48963 1.20630 0.91783 0.97827 0.99271 0.88574 1.21166 0.96194 1.02352 0.95466 1.21104 0.95304 0.96657 1.02422 1.21056 0.99477 0.95034 0.97098 1.22312 0.90171 1.03576 1.00928 0.87906 1.22978 0.98841 0.97045 1.00594 1.21383 1.00474 0.93073 0.99184 0.88223 1.22259 0.96234 0.83958 0.97548 1.24355 0.94949 0.97382 0.98223 1.68896 1.32615 1.10921 1.03235 1.22519 0.98263 0.90074 1.01611 1.19566 0.88052 0.82955 0.86011 1.90525 1.52087 1.53347 1.49146 1.41956 1.24632 1.05756 1.49426 1.20515 1.02623 0.95131 1.32719 0.88385 1.26497 1.04540 0.91526 0.98680 1.70907 1.14195 1.35994 1.33046 0.83138 0.73349 0.76210 0.75630 1.20423 1.20998 1.21029 1.24328 0.95817 0.96699 0.97044 0.92910 0.91416 0.88730 0.91330 0.90769 0.91601 0.91234 0.91480 0.91611 0.89135 0.88754 0.87173 0.89273 0.90326 0.89432 0.92213 0.79277 0.92840 0.90225 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 9.45 59.85 0.57 1.81 16 2 N -0.59 -7.17 3.12 -173.62 -0.54 -7.71 16 3 C 0.52 6.45 6.81 -10.99 -0.07 6.38 16 4 O -0.53 -8.44 15.03 5.55 0.08 -8.36 16 5 C -0.07 -0.66 1.77 -92.31 -0.16 -0.83 16 6 H 0.10 0.73 6.81 -51.93 -0.35 0.38 16 7 C -0.11 -0.85 4.59 -27.90 -0.13 -0.98 16 8 C -0.12 -0.70 5.82 -27.90 -0.16 -0.86 16 9 C -0.09 -0.56 5.83 -26.95 -0.16 -0.72 16 10 C -0.15 -1.14 6.24 -90.91 -0.57 -1.70 16 11 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 12 C -0.16 -1.48 8.73 -26.75 -0.23 -1.71 16 13 C -0.12 -1.13 4.93 -91.92 -0.45 -1.58 16 14 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.11 1.06 3.77 -67.72 -0.26 0.81 16 16 C -0.02 -0.20 7.20 -7.54 -0.05 -0.25 16 17 N -0.43 -6.45 4.27 -246.09 -1.05 -7.50 16 18 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 19 C 0.45 10.36 7.85 -10.99 -0.09 10.27 16 20 O -0.57 -15.34 16.01 5.55 0.09 -15.26 16 21 N -0.58 -14.35 5.28 -10.96 -0.06 -14.41 16 22 C -0.38 -10.64 9.68 -14.93 -0.14 -10.79 16 23 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 24 C -0.01 -0.28 5.50 -17.47 -0.10 -0.37 16 25 N -0.90 -25.10 13.68 55.50 0.76 -24.34 16 26 Si 1.09 24.24 29.92 -169.99 -5.09 19.15 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 30 C -0.01 -0.11 6.77 -7.54 -0.05 -0.16 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.99 7.35 -51.93 -0.38 0.61 16 33 H 0.09 1.52 5.98 -51.93 -0.31 1.21 16 34 H 0.07 0.60 7.08 -51.92 -0.37 0.23 16 35 H 0.07 0.49 6.63 -51.93 -0.34 0.15 16 36 H 0.07 0.37 8.02 -51.93 -0.42 -0.04 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.42 8.04 -51.93 -0.42 0.01 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.97 7.26 -51.93 -0.38 0.59 16 42 H 0.11 0.80 5.11 -51.93 -0.27 0.53 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 45 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 46 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 47 H 0.37 8.52 6.73 -40.82 -0.27 8.25 16 48 H 0.26 6.93 6.78 -40.82 -0.28 6.66 16 49 H 0.08 0.87 7.42 -51.93 -0.39 0.48 16 50 H 0.09 1.37 7.57 -51.93 -0.39 0.98 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -34.24 387.07 -9.96 -44.20 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.90 Total: 9.00 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.09 Total: -0.60 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.89 Total: -53.97 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.17 Total: -23.61 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.09 Total: 19.15 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.24 -9.96 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754577461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.224 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds