Wall clock time and date at job start Tue Mar 31 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 120.00389 * 2 1 4 4 O 1.21287 * 119.99974 * 5.36049 * 3 2 1 5 5 C 1.50704 * 120.00212 * 185.36180 * 3 2 1 6 6 H 1.09001 * 109.26652 * 39.95162 * 5 3 2 7 7 C 1.52872 * 109.26688 * 280.48482 * 5 3 2 8 8 C 1.50792 * 109.73413 * 185.94502 * 7 5 3 9 9 C 1.52874 * 109.72007 * 72.78487 * 8 7 5 10 10 C 1.52708 * 110.15413 * 306.58124 * 9 8 7 11 11 H 1.09008 * 115.39124 * 231.21494 * 10 9 8 12 12 C 1.53651 * 115.14927 * 89.81468 * 10 9 8 13 13 C 1.52068 * 120.52451 * 21.47202 * 10 9 8 14 14 H 1.09000 * 115.92713 * 208.89457 * 13 10 9 15 15 C 1.46506 * 119.99553 * 179.97438 * 2 1 3 16 16 C 1.53505 * 114.17180 * 306.42788 * 15 2 1 17 17 N 1.47482 * 87.92984 * 87.62583 * 16 15 2 18 18 C 1.46907 * 111.00126 * 138.70480 * 17 16 15 19 19 C 1.50694 * 109.47130 * 169.99801 * 18 17 16 20 20 O 1.21287 * 120.00189 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99850 * 179.97438 * 19 18 17 22 22 C 1.37108 * 119.99990 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00041 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99732 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00156 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99451 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46846 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47582 * 299.99983 * 26 24 22 29 29 H 1.48499 * 109.47283 * 60.00774 * 26 24 22 30 30 C 1.47482 * 87.83748 * 27.01144 * 17 16 15 31 31 H 1.08995 * 109.47130 * 264.73931 * 1 2 3 32 32 H 1.08996 * 109.46631 * 24.73717 * 1 2 3 33 33 H 1.09001 * 109.47351 * 144.73425 * 1 2 3 34 34 H 1.09007 * 109.61562 * 304.57480 * 7 5 3 35 35 H 1.08995 * 109.61771 * 65.10874 * 7 5 3 36 36 H 1.08999 * 108.14839 * 313.25431 * 8 7 5 37 37 H 1.09001 * 110.08868 * 193.51049 * 8 7 5 38 38 H 1.09003 * 109.35799 * 186.36976 * 9 8 7 39 39 H 1.09005 * 109.36144 * 66.79215 * 9 8 7 40 40 H 1.09001 * 117.53694 * 140.55372 * 12 10 9 41 41 H 1.09000 * 117.53981 * 355.30070 * 12 10 9 42 42 H 1.09006 * 113.37681 * 173.34673 * 15 2 1 43 43 H 1.08998 * 113.48136 * 332.86057 * 16 15 2 44 44 H 1.09005 * 113.52926 * 202.39371 * 16 15 2 45 45 H 1.09000 * 109.46873 * 49.99277 * 18 17 16 46 46 H 1.09000 * 109.46843 * 289.99811 * 18 17 16 47 47 H 0.97004 * 119.99978 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00231 * 359.97438 * 25 24 22 49 49 H 1.08994 * 113.47458 * 87.75949 * 30 17 16 50 50 H 1.08995 * 113.47254 * 218.22432 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5365 2.2152 0.0981 5 6 3.6410 1.1699 -0.1220 6 1 3.9445 0.4135 -0.8458 7 6 4.2581 0.8422 1.2378 8 6 5.7575 0.9848 1.1641 9 6 6.1321 2.4653 1.0960 10 6 5.3810 3.1461 -0.0461 11 1 5.9995 3.7222 -0.7345 12 6 4.0142 3.7374 0.3322 13 6 4.1030 2.5371 -0.6013 14 1 3.8919 2.7463 -1.6500 15 6 2.1974 -1.2688 0.0006 16 6 1.7914 -2.2285 1.1278 17 7 0.7387 -2.7471 0.2346 18 6 0.6403 -4.2097 0.3304 19 6 -0.5926 -4.6790 -0.3979 20 8 -1.3178 -3.8744 -0.9435 21 7 -0.8889 -5.9930 -0.4438 22 6 -2.0110 -6.4200 -1.1060 23 1 -2.6576 -5.7034 -1.5904 24 6 -2.3161 -7.7748 -1.1538 25 7 -1.5296 -8.6466 -0.5639 26 14 -3.8452 -8.3564 -2.0553 27 1 -3.9442 -9.8350 -1.9592 28 1 -5.0476 -7.7393 -1.4399 29 1 -3.7598 -7.9574 -3.4832 30 6 1.5863 -2.3478 -0.9043 31 1 -0.3633 -0.0942 1.0233 32 1 -0.3632 0.9334 -0.4300 33 1 -0.3634 -0.8391 -0.5933 34 1 3.8869 1.5422 1.9864 35 1 3.9951 -0.1763 1.5231 36 1 6.1028 0.4780 0.2630 37 1 6.2203 0.5300 2.0399 38 1 7.2052 2.5592 0.9292 39 1 5.8715 2.9478 2.0380 40 1 3.7417 4.6975 -0.1060 41 1 3.6522 3.5621 1.3453 42 1 3.2744 -1.1466 -0.1154 43 1 1.4012 -1.7215 2.0103 44 1 2.5577 -2.9652 1.3692 45 1 0.5764 -4.5016 1.3787 46 1 1.5232 -4.6634 -0.1199 47 1 -0.3083 -6.6366 -0.0083 48 1 -0.7357 -8.3446 -0.0953 49 1 2.2983 -3.1160 -1.2060 50 1 1.0222 -1.9419 -1.7440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754577461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:06 Heat of formation + Delta-G solvation = -24.469522 kcal Electronic energy + Delta-G solvation = -29617.430145 eV Core-core repulsion = 25645.748428 eV Total energy + Delta-G solvation = -3971.681718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22531 -41.07609 -39.88457 -39.15635 -36.37149 -35.74409 -34.14378 -33.15527 -32.30736 -31.22306 -28.35040 -27.15691 -26.94142 -25.94899 -25.05239 -23.50464 -22.60968 -21.82936 -21.46701 -20.04037 -19.92977 -18.91474 -18.42131 -18.01674 -17.51682 -17.07413 -16.75356 -16.69387 -16.17624 -16.01586 -15.65096 -15.45571 -15.05548 -14.88685 -14.87278 -14.51345 -14.32163 -14.04430 -13.76065 -13.54667 -13.36495 -13.33115 -13.19194 -12.89352 -12.82728 -12.59694 -12.31316 -12.23668 -12.00733 -11.95032 -11.93031 -11.85992 -11.77026 -11.50782 -11.30452 -11.08221 -10.60589 -10.46213 -10.41421 -10.09002 -9.74529 -9.67914 -8.91622 -6.05228 1.52493 1.53605 1.53938 1.81329 1.87659 2.04175 2.39835 2.74407 2.83016 3.16642 3.26144 3.38490 3.47556 3.63107 3.71040 3.78376 3.99631 4.04201 4.09824 4.15411 4.21999 4.25727 4.29309 4.36485 4.42698 4.46515 4.53413 4.57270 4.57617 4.62915 4.68995 4.79420 4.80697 4.86099 4.93339 5.01963 5.08411 5.10255 5.20676 5.32555 5.34801 5.35560 5.38386 5.42702 5.52335 5.60672 5.92371 5.99457 6.41919 6.60174 6.77982 7.12931 7.47018 7.97969 8.56520 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.002125 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.111832 B =13176.218052 C =13721.873468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.589 5.589 3 C 0.515 3.485 4 O -0.574 6.574 5 C -0.066 4.066 6 H 0.119 0.881 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.092 4.092 10 C -0.127 4.127 11 H 0.114 0.886 12 C -0.177 4.177 13 C -0.136 4.136 14 H 0.092 0.908 15 C 0.118 3.882 16 C -0.008 4.008 17 N -0.475 5.475 18 C 0.023 3.977 19 C 0.445 3.555 20 O -0.614 6.614 21 N -0.591 5.591 22 C -0.408 4.408 23 H 0.069 0.931 24 C -0.043 4.043 25 N -0.917 5.917 26 Si 1.131 2.869 27 H -0.272 1.272 28 H -0.275 1.275 29 H -0.273 1.273 30 C -0.013 4.013 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.152 0.848 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.384 0.616 48 H 0.260 0.740 49 H 0.106 0.894 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.837 16.636 4.752 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.320 5.320 3 C 0.305 3.695 4 O -0.453 6.453 5 C -0.087 4.087 6 H 0.137 0.863 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.130 4.130 10 C -0.145 4.145 11 H 0.132 0.868 12 C -0.214 4.214 13 C -0.155 4.155 14 H 0.110 0.890 15 C 0.013 3.987 16 C -0.138 4.138 17 N -0.198 5.198 18 C -0.109 4.109 19 C 0.233 3.767 20 O -0.499 6.499 21 N -0.231 5.231 22 C -0.537 4.537 23 H 0.087 0.913 24 C -0.241 4.241 25 N -0.557 5.557 26 Si 0.951 3.049 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.199 1.199 30 C -0.142 4.142 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.170 0.830 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.219 0.781 48 H 0.071 0.929 49 H 0.123 0.877 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.408 16.593 4.094 25.860 hybrid contribution 0.922 0.707 0.428 1.238 sum 20.330 17.300 4.521 27.074 Atomic orbital electron populations 1.21416 0.79631 1.01744 1.01569 1.47578 1.06631 1.05589 1.72167 1.21301 0.91170 0.82318 0.74726 1.90670 1.71373 1.32475 1.50809 1.20686 0.88667 0.98381 1.00997 0.86286 1.21193 0.97291 1.02687 0.93685 1.21108 0.93858 0.96333 1.03762 1.21132 1.00239 0.95392 0.96210 1.22422 0.89215 1.02089 1.00794 0.86752 1.22933 1.01361 0.97116 0.99979 1.21458 1.02133 0.93165 0.98709 0.88971 1.22401 0.97686 0.82217 0.96365 1.24430 0.94373 0.97661 0.97301 1.68862 1.35600 1.09764 1.05587 1.22403 0.95354 0.91460 1.01690 1.20907 0.89331 0.81819 0.84619 1.90500 1.54199 1.54402 1.50813 1.42021 1.24320 1.06876 1.49888 1.20460 1.03994 0.95159 1.34114 0.91305 1.27738 1.06428 0.91340 0.98594 1.70971 1.14692 1.36229 1.33804 0.82654 0.70764 0.76172 0.75280 1.19633 1.20105 1.19894 1.24412 0.95721 0.98192 0.95910 0.93478 0.92665 0.90843 0.93089 0.89223 0.90408 0.89639 0.89759 0.91975 0.89825 0.90104 0.83044 0.89786 0.86487 0.87425 0.88963 0.78146 0.92932 0.87653 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.96 9.45 127.77 1.21 4.17 16 2 N -0.59 -13.95 3.12 -821.61 -2.56 -16.51 16 3 C 0.51 12.53 6.81 87.66 0.60 13.12 16 4 O -0.57 -18.83 15.03 -3.05 -0.05 -18.88 16 5 C -0.07 -1.04 1.77 -11.89 -0.02 -1.06 16 6 H 0.12 1.34 6.81 -2.39 -0.02 1.32 16 7 C -0.11 -1.30 4.59 29.83 0.14 -1.16 16 8 C -0.11 -0.88 5.82 29.84 0.17 -0.71 16 9 C -0.09 -0.87 5.83 30.46 0.18 -0.70 16 10 C -0.13 -1.65 6.24 -10.98 -0.07 -1.72 16 11 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 12 C -0.18 -3.32 8.73 30.59 0.27 -3.06 16 13 C -0.14 -2.35 4.93 -11.64 -0.06 -2.41 16 14 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 15 C 0.12 2.02 3.77 45.44 0.17 2.19 16 16 C -0.01 -0.15 7.20 83.58 0.60 0.46 16 17 N -0.48 -13.30 4.27 -932.51 -3.99 -17.28 16 18 C 0.02 0.68 5.30 85.55 0.45 1.14 16 19 C 0.45 20.60 7.85 87.66 0.69 21.29 16 20 O -0.61 -34.19 16.01 -3.05 -0.05 -34.24 16 21 N -0.59 -29.51 5.28 -306.99 -1.62 -31.13 16 22 C -0.41 -23.30 9.68 84.04 0.81 -22.49 16 23 H 0.07 4.27 7.16 -2.91 -0.02 4.25 16 24 C -0.04 -2.32 5.50 84.93 0.47 -1.86 16 25 N -0.92 -50.75 13.68 21.66 0.30 -50.46 16 26 Si 1.13 48.75 29.92 68.60 2.05 50.80 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 C -0.01 -0.29 6.77 83.58 0.57 0.27 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.74 7.35 -2.39 -0.02 1.72 16 33 H 0.07 2.51 5.98 -2.39 -0.01 2.50 16 34 H 0.05 0.80 7.08 -2.38 -0.02 0.78 16 35 H 0.09 0.78 6.63 -2.39 -0.02 0.76 16 36 H 0.08 0.48 8.02 -2.39 -0.02 0.46 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.66 8.04 -2.38 -0.02 0.64 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.72 7.26 -2.39 -0.02 1.70 16 42 H 0.15 1.39 5.11 -2.38 -0.01 1.38 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.12 1.25 7.91 -2.38 -0.02 1.23 16 45 H 0.11 2.85 8.08 -2.39 -0.02 2.83 16 46 H 0.09 2.21 7.30 -2.39 -0.02 2.20 16 47 H 0.38 17.38 6.73 -92.71 -0.62 16.75 16 48 H 0.26 13.78 6.78 -92.70 -0.63 13.15 16 49 H 0.11 1.89 7.42 -2.39 -0.02 1.87 16 50 H 0.06 1.83 7.57 -2.39 -0.02 1.81 16 Total: -1.00 -78.96 387.07 0.73 -78.23 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.47 Total: 31.98 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 6.17 Total: 7.48 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.87 Total: -115.38 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.09 Total: -53.12 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.05 Total: 50.80 kcal Total: -78.96 0.73 -78.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754577461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.763 kcal (2) G-P(sol) polarization free energy of solvation -78.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds