Wall clock time and date at job start Tue Mar 31 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99566 * 2 1 4 4 O 1.21277 * 120.00058 * 5.12342 * 3 2 1 5 5 C 1.50702 * 119.99821 * 185.11827 * 3 2 1 6 6 H 1.09000 * 109.35347 * 43.63704 * 5 3 2 7 7 C 1.52874 * 109.35957 * 284.05714 * 5 3 2 8 8 C 1.56468 * 106.96365 * 183.54320 * 7 5 3 9 9 C 1.52867 * 107.86628 * 75.80606 * 8 7 5 10 10 C 1.52069 * 110.51666 * 304.50458 * 9 8 7 11 11 H 1.09003 * 114.63600 * 166.84064 * 10 9 8 12 12 C 1.49179 * 119.09996 * 309.91734 * 10 9 8 13 13 C 1.52073 * 120.02290 * 21.70054 * 10 9 8 14 14 H 1.08995 * 117.26042 * 144.42767 * 13 10 9 15 15 C 1.46503 * 120.00149 * 179.97438 * 2 1 3 16 16 C 1.53929 * 113.73492 * 322.50942 * 15 2 1 17 17 N 1.48189 * 86.10358 * 90.77637 * 16 15 2 18 18 C 1.46897 * 111.07204 * 137.52120 * 17 16 15 19 19 C 1.50700 * 109.47438 * 70.56188 * 18 17 16 20 20 O 1.21292 * 119.99628 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00253 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00196 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99903 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00478 * 180.02562 * 22 21 19 25 25 N 1.31420 * 119.99420 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00567 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47247 * 90.00144 * 26 24 22 28 28 H 1.48498 * 109.47506 * 210.00524 * 26 24 22 29 29 H 1.48504 * 109.47027 * 330.00229 * 26 24 22 30 30 C 1.47955 * 90.79606 * 24.60058 * 17 16 15 31 31 H 1.09005 * 109.47075 * 274.61087 * 1 2 3 32 32 H 1.08993 * 109.47825 * 34.61116 * 1 2 3 33 33 H 1.09002 * 109.46980 * 154.61781 * 1 2 3 34 34 H 1.09005 * 109.62095 * 304.99657 * 7 5 3 35 35 H 1.09010 * 109.61811 * 65.53561 * 7 5 3 36 36 H 1.09003 * 110.47693 * 316.00780 * 8 7 5 37 37 H 1.09004 * 109.61995 * 195.11244 * 8 7 5 38 38 H 1.08998 * 109.27052 * 184.23764 * 9 8 7 39 39 H 1.08997 * 109.23926 * 64.75360 * 9 8 7 40 40 H 1.09004 * 117.01147 * 2.53763 * 12 10 9 41 41 H 1.09000 * 117.66325 * 217.94562 * 12 10 9 42 42 H 1.08996 * 112.93855 * 190.93724 * 15 2 1 43 43 H 1.08997 * 113.76163 * 205.05894 * 16 15 2 44 44 H 1.09001 * 113.75908 * 336.42225 * 16 15 2 45 45 H 1.08996 * 109.47460 * 190.57283 * 18 17 16 46 46 H 1.09006 * 109.46829 * 310.56679 * 18 17 16 47 47 H 0.97002 * 120.00263 * 0.02562 * 21 19 18 48 48 H 0.97002 * 119.99636 * 179.97438 * 25 24 22 49 49 H 1.09007 * 113.75809 * 221.08215 * 30 17 16 50 50 H 1.09003 * 113.86051 * 89.73589 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2154 0.0938 5 6 3.6413 1.1699 -0.1164 6 1 3.9453 0.4587 -0.8844 7 6 4.2540 0.7584 1.2223 8 6 5.8071 0.8683 1.0665 9 6 6.1800 2.3499 1.1178 10 6 5.4101 3.1300 0.0637 11 1 5.4482 4.2129 0.1818 12 6 5.4021 2.6348 -1.3435 13 6 4.1164 2.5683 -0.5049 14 1 3.3268 3.2797 -0.7464 15 6 2.1975 -1.2687 0.0006 16 6 1.5391 -2.3640 0.8587 17 7 0.8177 -2.7554 -0.3751 18 6 0.7799 -4.2164 -0.5239 19 6 -0.1416 -4.8034 0.5141 20 8 -0.7112 -4.0761 1.3001 21 7 -0.3336 -6.1362 0.5683 22 6 -1.1723 -6.6702 1.5123 23 1 -1.6795 -6.0226 2.2122 24 6 -1.3698 -8.0444 1.5686 25 7 -0.7522 -8.8323 0.7172 26 14 -2.5131 -8.7719 2.8543 27 1 -3.8910 -8.8466 2.3059 28 1 -2.0491 -10.1357 3.2145 29 1 -2.5081 -7.9116 4.0647 30 6 1.8856 -2.1647 -1.2116 31 1 -0.3633 0.0826 1.0244 32 1 -0.3634 0.8457 -0.5837 33 1 -0.3633 -0.9285 -0.4405 34 1 3.8786 1.4091 2.0122 35 1 3.9922 -0.2767 1.4419 36 1 6.1258 0.4434 0.1147 37 1 6.2953 0.3394 1.8851 38 1 7.2492 2.4582 0.9360 39 1 5.9410 2.7464 2.1046 40 1 5.9235 1.6983 -1.5418 41 1 5.4457 3.3764 -2.1412 42 1 3.2634 -1.1437 0.1910 43 1 2.2375 -3.1199 1.2176 44 1 0.8901 -1.9759 1.6438 45 1 0.4154 -4.4710 -1.5190 46 1 1.7830 -4.6213 -0.3898 47 1 0.1217 -6.7178 -0.0605 48 1 -0.8898 -9.7917 0.7568 49 1 1.5130 -1.6177 -2.0778 50 1 2.6864 -2.8610 -1.4608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754577462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:10 Heat of formation + Delta-G solvation = -4.574353 kcal Electronic energy + Delta-G solvation = -29631.843648 eV Core-core repulsion = 25661.024650 eV Total energy + Delta-G solvation = -3970.818998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15842 -39.98555 -38.56819 -37.70383 -34.67708 -33.89081 -33.35668 -31.59257 -31.31085 -29.84565 -27.22617 -26.14536 -25.63947 -24.94814 -23.56532 -23.04874 -21.73135 -20.77859 -19.33139 -19.02676 -18.50869 -17.97153 -17.35952 -16.61820 -16.15294 -15.87463 -15.35655 -15.12119 -15.09077 -14.62985 -14.52330 -14.16009 -14.04874 -13.78198 -13.73802 -13.37210 -13.16766 -12.88794 -12.79179 -12.37901 -12.10024 -12.01533 -11.88942 -11.78809 -11.63275 -11.55292 -11.39384 -11.28659 -11.14710 -11.02689 -10.91082 -10.63319 -10.42378 -10.26023 -10.25039 -9.93413 -9.65089 -9.54048 -8.75187 -8.61104 -8.28389 -8.00313 -6.45517 -3.86423 2.52640 2.90348 3.15164 3.24203 3.29714 3.50476 3.82092 3.89577 4.13303 4.17344 4.24713 4.38928 4.49625 4.61367 4.72370 4.77799 4.83257 4.88433 4.91031 5.04081 5.10777 5.14469 5.20782 5.23213 5.33520 5.38680 5.47585 5.50934 5.61742 5.63759 5.66339 5.73470 5.74886 5.76228 5.78582 5.83110 5.89510 5.95771 5.98491 6.08888 6.11761 6.19980 6.25492 6.50661 6.53176 7.05746 7.41247 7.51626 8.01650 8.12794 8.56929 9.14147 9.49896 10.01211 10.72151 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002199 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.374437 B =12728.217064 C =13025.840165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.586 5.586 3 C 0.519 3.481 4 O -0.539 6.539 5 C -0.074 4.074 6 H 0.095 0.905 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.091 4.091 10 C -0.136 4.136 11 H 0.098 0.902 12 C -0.182 4.182 13 C -0.135 4.135 14 H 0.119 0.881 15 C 0.097 3.903 16 C 0.014 3.986 17 N -0.450 5.450 18 C 0.009 3.991 19 C 0.443 3.557 20 O -0.579 6.579 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C -0.016 4.016 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.092 0.908 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.141 17.017 -4.716 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.317 5.317 3 C 0.307 3.693 4 O -0.416 6.416 5 C -0.096 4.096 6 H 0.113 0.887 7 C -0.152 4.152 8 C -0.158 4.158 9 C -0.129 4.129 10 C -0.154 4.154 11 H 0.116 0.884 12 C -0.219 4.219 13 C -0.153 4.153 14 H 0.137 0.863 15 C -0.008 4.008 16 C -0.116 4.116 17 N -0.173 5.173 18 C -0.123 4.123 19 C 0.228 3.772 20 O -0.463 6.463 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.146 4.146 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.701 18.029 -4.250 23.648 hybrid contribution 0.455 -1.436 0.147 1.513 sum 15.156 16.594 -4.103 22.845 Atomic orbital electron populations 1.21848 0.77922 1.04294 1.02127 1.47490 1.07484 1.04440 1.72333 1.20544 0.89767 0.83130 0.75820 1.90663 1.70298 1.31123 1.49557 1.20808 0.91746 0.97291 0.99724 0.88712 1.22261 0.95361 1.01943 0.95639 1.22168 0.94889 0.96462 1.02239 1.20885 0.99122 0.94673 0.98174 1.21336 0.99137 0.99764 0.95153 0.88403 1.22678 1.01343 1.03418 0.94486 1.22023 0.91419 0.97123 1.04767 0.86288 1.22816 0.96504 0.84249 0.97246 1.24216 0.96563 0.95350 0.95454 1.68444 1.35780 1.09521 1.03515 1.22476 0.99210 0.89870 1.00737 1.19671 0.86770 0.83121 0.87647 1.90528 1.52367 1.59506 1.43882 1.41875 1.41576 1.05110 1.31515 1.19687 1.21452 0.90874 1.10791 0.87943 1.25262 0.98309 0.96069 0.98304 1.69615 1.43024 1.04981 1.36698 0.85861 0.79827 0.78092 0.80542 1.20372 1.20925 1.19430 1.24522 0.94890 0.97355 0.97862 0.93003 0.91912 0.87682 0.90480 0.90813 0.91382 0.91183 0.91504 0.91379 0.88748 0.88969 0.87557 0.90349 0.88155 0.89098 0.92659 0.77516 0.91861 0.88992 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.36 59.85 0.56 1.68 16 2 N -0.59 -7.34 3.09 -175.28 -0.54 -7.89 16 3 C 0.52 6.70 6.87 -10.99 -0.08 6.63 16 4 O -0.54 -8.85 15.21 5.56 0.08 -8.76 16 5 C -0.07 -0.70 1.56 -91.98 -0.14 -0.85 16 6 H 0.09 0.77 7.26 -51.93 -0.38 0.39 16 7 C -0.11 -0.95 5.01 -24.93 -0.12 -1.07 16 8 C -0.12 -0.78 5.81 -24.93 -0.14 -0.93 16 9 C -0.09 -0.61 5.92 -27.27 -0.16 -0.78 16 10 C -0.14 -1.07 5.91 -93.45 -0.55 -1.62 16 11 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 12 C -0.18 -1.36 9.48 -28.27 -0.27 -1.63 16 13 C -0.13 -1.29 5.53 -90.90 -0.50 -1.79 16 14 H 0.12 1.39 6.98 -51.93 -0.36 1.03 16 15 C 0.10 1.04 3.80 -69.63 -0.26 0.78 16 16 C 0.01 0.19 6.01 -2.64 -0.02 0.17 16 17 N -0.45 -6.67 4.00 -239.68 -0.96 -7.63 16 18 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 19 C 0.44 10.00 7.59 -10.99 -0.08 9.91 16 20 O -0.58 -15.06 15.13 5.55 0.08 -14.97 16 21 N -0.56 -13.89 5.29 -10.97 -0.06 -13.95 16 22 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 30 C -0.02 -0.17 7.46 -2.76 -0.02 -0.19 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.87 7.64 -51.93 -0.40 0.48 16 33 H 0.10 1.57 5.92 -51.93 -0.31 1.26 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.07 0.57 5.90 -51.92 -0.31 0.27 16 36 H 0.07 0.41 7.00 -51.93 -0.36 0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.63 7.12 -51.93 -0.37 0.26 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.88 4.44 -51.93 -0.23 0.65 16 43 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 44 H 0.10 1.65 7.79 -51.93 -0.40 1.24 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 47 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 50 H 0.08 0.70 7.80 -51.93 -0.40 0.29 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -32.08 387.40 -9.88 -41.96 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -7.96 Total: 10.42 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.06 Total: 2.61 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.83 Total: -52.89 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.08 -9.88 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754577462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.387 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds