Wall clock time and date at job start Tue Mar 31 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99566 * 2 1 4 4 O 1.21277 * 120.00058 * 5.12342 * 3 2 1 5 5 C 1.50702 * 119.99821 * 185.11827 * 3 2 1 6 6 H 1.09000 * 109.35347 * 43.63704 * 5 3 2 7 7 C 1.52874 * 109.35957 * 284.05714 * 5 3 2 8 8 C 1.56468 * 106.96365 * 183.54320 * 7 5 3 9 9 C 1.52867 * 107.86628 * 75.80606 * 8 7 5 10 10 C 1.52069 * 110.51666 * 304.50458 * 9 8 7 11 11 H 1.09003 * 114.63600 * 166.84064 * 10 9 8 12 12 C 1.49179 * 119.09996 * 309.91734 * 10 9 8 13 13 C 1.52073 * 120.02290 * 21.70054 * 10 9 8 14 14 H 1.08995 * 117.26042 * 144.42767 * 13 10 9 15 15 C 1.46503 * 120.00149 * 179.97438 * 2 1 3 16 16 C 1.53929 * 113.73492 * 322.50942 * 15 2 1 17 17 N 1.48189 * 86.10358 * 90.77637 * 16 15 2 18 18 C 1.46897 * 111.07204 * 137.52120 * 17 16 15 19 19 C 1.50700 * 109.47438 * 70.56188 * 18 17 16 20 20 O 1.21292 * 119.99628 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00253 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00196 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99903 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00478 * 180.02562 * 22 21 19 25 25 N 1.31420 * 119.99420 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00567 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47247 * 90.00144 * 26 24 22 28 28 H 1.48498 * 109.47506 * 210.00524 * 26 24 22 29 29 H 1.48504 * 109.47027 * 330.00229 * 26 24 22 30 30 C 1.47955 * 90.79606 * 24.60058 * 17 16 15 31 31 H 1.09005 * 109.47075 * 274.61087 * 1 2 3 32 32 H 1.08993 * 109.47825 * 34.61116 * 1 2 3 33 33 H 1.09002 * 109.46980 * 154.61781 * 1 2 3 34 34 H 1.09005 * 109.62095 * 304.99657 * 7 5 3 35 35 H 1.09010 * 109.61811 * 65.53561 * 7 5 3 36 36 H 1.09003 * 110.47693 * 316.00780 * 8 7 5 37 37 H 1.09004 * 109.61995 * 195.11244 * 8 7 5 38 38 H 1.08998 * 109.27052 * 184.23764 * 9 8 7 39 39 H 1.08997 * 109.23926 * 64.75360 * 9 8 7 40 40 H 1.09004 * 117.01147 * 2.53763 * 12 10 9 41 41 H 1.09000 * 117.66325 * 217.94562 * 12 10 9 42 42 H 1.08996 * 112.93855 * 190.93724 * 15 2 1 43 43 H 1.08997 * 113.76163 * 205.05894 * 16 15 2 44 44 H 1.09001 * 113.75908 * 336.42225 * 16 15 2 45 45 H 1.08996 * 109.47460 * 190.57283 * 18 17 16 46 46 H 1.09006 * 109.46829 * 310.56679 * 18 17 16 47 47 H 0.97002 * 120.00263 * 0.02562 * 21 19 18 48 48 H 0.97002 * 119.99636 * 179.97438 * 25 24 22 49 49 H 1.09007 * 113.75809 * 221.08215 * 30 17 16 50 50 H 1.09003 * 113.86051 * 89.73589 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2154 0.0938 5 6 3.6413 1.1699 -0.1164 6 1 3.9453 0.4587 -0.8844 7 6 4.2540 0.7584 1.2223 8 6 5.8071 0.8683 1.0665 9 6 6.1800 2.3499 1.1178 10 6 5.4101 3.1300 0.0637 11 1 5.4482 4.2129 0.1818 12 6 5.4021 2.6348 -1.3435 13 6 4.1164 2.5683 -0.5049 14 1 3.3268 3.2797 -0.7464 15 6 2.1975 -1.2687 0.0006 16 6 1.5391 -2.3640 0.8587 17 7 0.8177 -2.7554 -0.3751 18 6 0.7799 -4.2164 -0.5239 19 6 -0.1416 -4.8034 0.5141 20 8 -0.7112 -4.0761 1.3001 21 7 -0.3336 -6.1362 0.5683 22 6 -1.1723 -6.6702 1.5123 23 1 -1.6795 -6.0226 2.2122 24 6 -1.3698 -8.0444 1.5686 25 7 -0.7522 -8.8323 0.7172 26 14 -2.5131 -8.7719 2.8543 27 1 -3.8910 -8.8466 2.3059 28 1 -2.0491 -10.1357 3.2145 29 1 -2.5081 -7.9116 4.0647 30 6 1.8856 -2.1647 -1.2116 31 1 -0.3633 0.0826 1.0244 32 1 -0.3634 0.8457 -0.5837 33 1 -0.3633 -0.9285 -0.4405 34 1 3.8786 1.4091 2.0122 35 1 3.9922 -0.2767 1.4419 36 1 6.1258 0.4434 0.1147 37 1 6.2953 0.3394 1.8851 38 1 7.2492 2.4582 0.9360 39 1 5.9410 2.7464 2.1046 40 1 5.9235 1.6983 -1.5418 41 1 5.4457 3.3764 -2.1412 42 1 3.2634 -1.1437 0.1910 43 1 2.2375 -3.1199 1.2176 44 1 0.8901 -1.9759 1.6438 45 1 0.4154 -4.4710 -1.5190 46 1 1.7830 -4.6213 -0.3898 47 1 0.1217 -6.7178 -0.0605 48 1 -0.8898 -9.7917 0.7568 49 1 1.5130 -1.6177 -2.0778 50 1 2.6864 -2.8610 -1.4608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754577462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:09 Heat of formation + Delta-G solvation = -25.830983 kcal Electronic energy + Delta-G solvation = -29632.765405 eV Core-core repulsion = 25661.024650 eV Total energy + Delta-G solvation = -3971.740755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11352 -40.94565 -39.76698 -39.17288 -36.04686 -35.61536 -34.01286 -33.27291 -32.26731 -31.14388 -28.29932 -27.36655 -26.95385 -25.88187 -24.88252 -23.67601 -22.52474 -21.70112 -21.03946 -19.92947 -19.78710 -19.24267 -18.34970 -17.81771 -17.49649 -16.88380 -16.67425 -16.32628 -16.26577 -16.15305 -15.55685 -15.33192 -15.08610 -14.89450 -14.71592 -14.49253 -14.16957 -13.92340 -13.76900 -13.58429 -13.45503 -13.21628 -13.03541 -12.97270 -12.84477 -12.71513 -12.42433 -12.37191 -12.16042 -12.15320 -12.04019 -11.97662 -11.86443 -11.49091 -11.28162 -10.92557 -10.63789 -10.50371 -10.30030 -9.99908 -9.73034 -9.60161 -8.46445 -5.94400 1.37145 1.41211 1.52339 1.53179 1.91766 2.07920 2.28665 2.80769 2.88763 3.21037 3.25898 3.34872 3.49703 3.61472 3.79438 3.90359 3.97900 4.09451 4.16831 4.25843 4.30611 4.32232 4.38284 4.41833 4.47385 4.50769 4.54167 4.58136 4.63432 4.65125 4.69686 4.84930 4.85165 4.93518 4.94441 5.05258 5.07527 5.17889 5.20798 5.27631 5.36189 5.39646 5.41514 5.42720 5.47099 5.48730 5.88399 6.07624 6.41877 6.61641 7.10845 7.14302 7.58509 8.14638 8.70901 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002199 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.374437 B =12728.217064 C =13025.840165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.588 5.588 3 C 0.515 3.485 4 O -0.583 6.583 5 C -0.064 4.064 6 H 0.120 0.880 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.092 4.092 10 C -0.135 4.135 11 H 0.094 0.906 12 C -0.164 4.164 13 C -0.160 4.160 14 H 0.088 0.912 15 C 0.111 3.889 16 C 0.008 3.992 17 N -0.480 5.480 18 C 0.023 3.977 19 C 0.441 3.559 20 O -0.619 6.619 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.274 1.274 30 C -0.003 4.003 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.143 0.857 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.096 0.904 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.124 16.114 -5.890 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.318 5.318 3 C 0.305 3.695 4 O -0.463 6.463 5 C -0.085 4.085 6 H 0.138 0.862 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.129 4.129 10 C -0.153 4.153 11 H 0.112 0.888 12 C -0.201 4.201 13 C -0.179 4.179 14 H 0.106 0.894 15 C 0.006 3.994 16 C -0.122 4.122 17 N -0.203 5.203 18 C -0.109 4.109 19 C 0.228 3.772 20 O -0.505 6.505 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.199 1.199 30 C -0.132 4.132 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.160 0.840 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.115 0.885 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.714 17.110 -5.450 25.224 hybrid contribution -0.511 -1.048 0.518 1.276 sum 17.203 16.062 -4.932 24.047 Atomic orbital electron populations 1.21623 0.79484 1.03542 1.00791 1.47589 1.06822 1.05435 1.71938 1.21290 0.91355 0.82327 0.74536 1.90642 1.71511 1.32703 1.51448 1.20840 0.88558 0.97946 1.01107 0.86232 1.22273 0.96982 1.01780 0.94187 1.22173 0.92963 0.96330 1.03629 1.20923 0.99812 0.94787 0.97394 1.21433 0.97863 0.99899 0.96140 0.88766 1.22754 0.98941 1.04203 0.94165 1.21894 0.91677 0.96834 1.07450 0.89370 1.22869 0.97566 0.82547 0.96406 1.24182 0.96332 0.96916 0.94729 1.68447 1.38486 1.08421 1.04961 1.22372 0.98907 0.90806 0.98771 1.20840 0.86306 0.82193 0.87855 1.90507 1.53925 1.60292 1.45765 1.41949 1.41825 1.06093 1.31475 1.19598 1.23104 0.91364 1.11906 0.90614 1.25977 0.99383 0.95896 0.99977 1.69665 1.43576 1.05360 1.37480 0.84982 0.78109 0.77599 0.77989 1.19870 1.19461 1.19929 1.24609 0.94332 0.97080 0.97172 0.94792 0.92374 0.88447 0.92553 0.89995 0.89760 0.89944 0.89863 0.91966 0.86916 0.88568 0.84022 0.89229 0.91872 0.87459 0.89534 0.76984 0.91352 0.88531 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.59 9.36 127.77 1.20 3.79 16 2 N -0.59 -14.47 3.09 -826.86 -2.56 -17.03 16 3 C 0.51 13.22 6.87 87.66 0.60 13.82 16 4 O -0.58 -20.02 15.21 -3.02 -0.05 -20.07 16 5 C -0.06 -1.08 1.56 -11.68 -0.02 -1.10 16 6 H 0.12 1.43 7.26 -2.39 -0.02 1.41 16 7 C -0.11 -1.64 5.01 31.76 0.16 -1.48 16 8 C -0.11 -1.07 5.81 31.76 0.18 -0.88 16 9 C -0.09 -0.99 5.92 30.24 0.18 -0.81 16 10 C -0.14 -1.89 5.91 -12.62 -0.07 -1.97 16 11 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 12 C -0.16 -2.00 9.48 29.60 0.28 -1.72 16 13 C -0.16 -2.91 5.53 -10.98 -0.06 -2.97 16 14 H 0.09 2.17 6.98 -2.39 -0.02 2.15 16 15 C 0.11 2.10 3.80 46.55 0.18 2.28 16 16 C 0.01 0.22 6.01 86.36 0.52 0.73 16 17 N -0.48 -13.47 4.00 -912.23 -3.65 -17.12 16 18 C 0.02 0.70 5.31 85.56 0.45 1.15 16 19 C 0.44 19.99 7.59 87.66 0.67 20.66 16 20 O -0.62 -33.23 15.13 -3.07 -0.05 -33.27 16 21 N -0.58 -28.63 5.29 -306.99 -1.62 -30.25 16 22 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 23 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 25 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 26 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 30 C 0.00 -0.05 7.46 86.41 0.64 0.60 16 31 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.72 7.64 -2.39 -0.02 1.70 16 33 H 0.10 3.01 5.92 -2.39 -0.01 2.99 16 34 H 0.06 1.05 8.11 -2.38 -0.02 1.03 16 35 H 0.08 1.02 5.90 -2.38 -0.01 1.01 16 36 H 0.08 0.57 7.00 -2.39 -0.02 0.55 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.99 7.12 -2.39 -0.02 0.97 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.14 1.73 4.44 -2.39 -0.01 1.72 16 43 H 0.09 2.17 7.79 -2.39 -0.02 2.16 16 44 H 0.06 2.16 7.79 -2.39 -0.02 2.14 16 45 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.09 2.14 7.70 -2.38 -0.02 2.12 16 47 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 49 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.11 1.33 7.80 -2.39 -0.02 1.31 16 Total: -1.00 -73.68 387.40 0.80 -72.88 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.22 Total: 34.45 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.19 Total: 14.24 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -7.55 Total: -112.93 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.09 Total: -53.34 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.68 0.80 -72.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754577462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.051 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds