Wall clock time and date at job start Tue Mar 31 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47731 * 318.20081 * 3 2 1 5 5 C 1.52996 * 109.47839 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47582 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47231 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46844 * 179.97438 * 7 6 5 9 9 O 1.21270 * 120.00381 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99818 * 359.97438 * 10 8 7 12 12 C 1.46494 * 120.00072 * 180.02562 * 10 8 7 13 13 C 1.53937 * 113.73257 * 239.99677 * 12 10 8 14 14 N 1.47955 * 86.18157 * 269.35781 * 13 12 10 15 15 C 1.46896 * 111.00525 * 222.41550 * 14 13 12 16 16 C 1.50703 * 109.47363 * 169.99959 * 15 14 13 17 17 O 1.21288 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99567 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99515 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00564 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47368 * 89.99519 * 23 21 19 25 25 H 1.48498 * 109.47407 * 210.00064 * 23 21 19 26 26 H 1.48505 * 109.46845 * 329.99548 * 23 21 19 27 27 C 1.47961 * 90.76430 * 335.31007 * 14 13 12 28 28 H 4.44655 * 5.63239 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.47038 * 198.20455 * 3 2 1 30 30 H 1.09001 * 109.47381 * 78.20395 * 3 2 1 31 31 H 1.09000 * 109.46912 * 60.00085 * 4 3 2 32 32 H 1.09001 * 109.46944 * 300.00582 * 4 3 2 33 33 H 1.09000 * 109.47067 * 59.99852 * 5 4 3 34 34 H 1.09007 * 109.46635 * 300.00068 * 5 4 3 35 35 H 1.08993 * 109.47019 * 59.99624 * 6 5 4 36 36 H 1.09001 * 109.46709 * 299.99952 * 6 5 4 37 37 H 1.09000 * 109.47351 * 59.99447 * 7 6 5 38 38 H 1.09007 * 109.46702 * 299.99449 * 7 6 5 39 39 H 1.09008 * 109.46984 * 270.00101 * 11 10 8 40 40 H 1.08993 * 109.47005 * 30.00062 * 11 10 8 41 41 H 1.08998 * 109.46819 * 150.00845 * 11 10 8 42 42 H 1.09001 * 113.00985 * 11.62465 * 12 10 8 43 43 H 1.09005 * 113.75745 * 23.67504 * 13 12 10 44 44 H 1.08996 * 113.76539 * 155.04190 * 13 12 10 45 45 H 1.08998 * 109.47190 * 290.00447 * 15 14 13 46 46 H 1.09002 * 109.47036 * 50.00132 * 15 14 13 47 47 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 48 48 H 0.97003 * 120.00028 * 180.02562 * 22 21 19 49 49 H 1.09002 * 113.75838 * 270.37219 * 27 14 13 50 50 H 1.09002 * 113.76303 * 139.00391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.0744 0.9614 5 6 4.6866 -1.0733 0.9619 6 6 5.1971 -2.1489 1.9229 7 6 6.7271 -2.1473 1.9238 8 6 7.2299 -3.2062 2.8708 9 8 6.4422 -3.8941 3.4848 10 7 8.5551 -3.3882 3.0361 11 6 9.5067 -2.5568 2.2947 12 6 9.0439 -4.4180 3.9562 13 6 9.9129 -3.8647 5.1001 14 7 11.0655 -4.0874 4.1995 15 6 12.2003 -4.6673 4.9302 16 6 13.2577 -5.1058 3.9500 17 8 13.0830 -4.9509 2.7598 18 7 14.3975 -5.6700 4.3960 19 6 15.3593 -6.0694 3.5043 20 1 15.2036 -5.9315 2.4445 21 6 16.5345 -6.6506 3.9641 22 7 17.4566 -7.0330 3.1094 23 14 16.8040 -6.8886 5.7972 24 1 16.2798 -8.2163 6.2064 25 1 18.2565 -6.8157 6.0976 26 1 16.0899 -5.8226 6.5449 27 6 10.3167 -5.1324 3.4671 28 1 -1.0498 -0.0001 0.0003 29 1 3.0089 0.9771 0.3211 30 1 3.0095 -0.2093 -1.0060 31 1 2.7938 -2.0508 0.6404 32 1 2.7931 -0.8645 1.9674 33 1 5.0491 -0.0969 1.2831 34 1 5.0503 -1.2831 -0.0441 35 1 4.8346 -3.1251 1.6012 36 1 4.8333 -1.9395 2.9288 37 1 7.0892 -1.1709 2.2456 38 1 7.0912 -2.3564 0.9178 39 1 9.7442 -3.0356 1.3446 40 1 9.0653 -1.5780 2.1079 41 1 10.4186 -2.4386 2.8799 42 1 8.2601 -5.0977 4.2902 43 1 9.7272 -2.8142 5.3241 44 1 9.9221 -4.4952 5.9891 45 1 12.6179 -3.9202 5.6051 46 1 11.8599 -5.5277 5.5064 47 1 14.5371 -5.7943 5.3478 48 1 18.2770 -7.4391 3.4304 49 1 10.4439 -6.1337 3.8785 50 1 10.4535 -5.0948 2.3863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754580059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:31 Heat of formation + Delta-G solvation = 13.276462 kcal Electronic energy + Delta-G solvation = -27746.175394 eV Core-core repulsion = 23776.130465 eV Total energy + Delta-G solvation = -3970.044929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81475 -39.25263 -37.89823 -36.81380 -34.86312 -34.23031 -33.94698 -31.74818 -31.56003 -30.12027 -27.72815 -27.04700 -26.11047 -25.40953 -23.83897 -22.89992 -21.46591 -20.30461 -19.42945 -18.60587 -18.43035 -18.38619 -17.21593 -16.54875 -16.36300 -16.00161 -15.68928 -15.33180 -15.08764 -14.83589 -14.61201 -14.36433 -14.08570 -13.81383 -13.57144 -13.23470 -13.16580 -12.90368 -12.58819 -12.48670 -12.43321 -12.35126 -12.10002 -11.94872 -11.78963 -11.65922 -11.48908 -11.34656 -11.22447 -10.99787 -10.87603 -10.84843 -10.62584 -10.51516 -10.47311 -10.00805 -9.85216 -9.59872 -8.81411 -8.65552 -8.39236 -8.20941 -6.34271 -3.85814 2.43199 2.46668 2.51774 2.86082 2.99877 3.03953 3.12662 3.69335 3.89303 3.94725 4.07292 4.34245 4.44443 4.53989 4.55872 4.64921 4.75785 4.83929 4.87544 5.03581 5.10824 5.15260 5.19597 5.26830 5.29997 5.37196 5.41137 5.44944 5.48771 5.52863 5.56787 5.61481 5.65650 5.66539 5.68953 5.76296 5.81084 5.88902 5.96394 6.05853 6.07992 6.09551 6.42877 6.55169 7.00032 7.24461 7.35915 7.54455 8.08564 8.10569 8.56302 8.91651 9.39042 9.79088 10.78839 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040414 B = 0.001530 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.670622 B =18294.197496 C =18688.512574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.186 4.186 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.138 4.138 8 C 0.513 3.487 9 O -0.548 6.548 10 N -0.590 5.590 11 C 0.070 3.930 12 C 0.111 3.889 13 C -0.012 4.012 14 N -0.452 5.452 15 C 0.006 3.994 16 C 0.453 3.547 17 O -0.561 6.561 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.013 3.987 28 H 0.216 0.784 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.077 0.923 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.548 12.738 0.506 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.186 4.186 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.178 4.178 8 C 0.301 3.699 9 O -0.426 6.426 10 N -0.322 5.322 11 C -0.072 4.072 12 C 0.005 3.995 13 C -0.143 4.143 14 N -0.175 5.175 15 C -0.126 4.126 16 C 0.238 3.762 17 O -0.443 6.443 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.117 4.117 28 H 0.233 0.767 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.521 12.935 -0.388 28.615 hybrid contribution 0.292 -0.957 1.975 2.214 sum -25.229 11.978 1.587 27.973 Atomic orbital electron populations 1.24932 0.96040 1.01114 1.01178 1.23236 0.94712 1.00320 1.00298 1.18800 0.84570 1.00599 1.01194 1.21542 0.95547 0.98653 0.99489 1.21625 0.94731 0.99370 1.00068 1.21345 0.92922 0.99610 1.00362 1.21710 0.97677 0.98523 0.99862 1.20795 0.81652 0.84677 0.82727 1.90674 1.55045 1.48153 1.48701 1.47520 1.05802 1.35772 1.43094 1.22020 0.94690 0.93210 0.97300 1.22450 0.96351 0.90442 0.90208 1.24481 0.91345 1.02685 0.95741 1.68404 1.01885 1.31684 1.15486 1.22513 0.94210 0.99273 0.96642 1.19574 0.83566 0.83668 0.89383 1.90553 1.79061 1.58261 1.16432 1.42223 1.16905 1.55759 1.08148 1.19421 0.95004 1.36503 0.92478 0.86294 1.25029 0.95633 0.97252 0.98146 1.69620 1.07964 1.40492 1.34015 0.86682 0.78846 0.78899 0.85023 1.19653 1.20132 1.19508 1.24196 0.90199 0.94664 1.02623 0.76740 0.89544 0.89511 0.91432 0.91474 0.91599 0.91541 0.91157 0.91221 0.88842 0.88771 0.92449 0.91778 0.87791 0.87491 0.89160 0.90444 0.89027 0.92560 0.79735 0.91593 0.90450 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.46 13.34 -37.13 -0.50 -1.95 16 3 C -0.02 -0.09 5.70 -29.52 -0.17 -0.25 16 4 C -0.11 -0.69 5.17 -26.74 -0.14 -0.82 16 5 C -0.12 -0.66 5.21 -26.73 -0.14 -0.80 16 6 C -0.10 -0.81 4.50 -26.73 -0.12 -0.93 16 7 C -0.14 -1.08 4.25 -27.89 -0.12 -1.20 16 8 C 0.51 6.03 7.67 -10.98 -0.08 5.95 16 9 O -0.55 -8.29 15.47 5.57 0.09 -8.20 16 10 N -0.59 -6.88 3.09 -175.28 -0.54 -7.42 16 11 C 0.07 0.73 9.19 59.85 0.55 1.28 16 12 C 0.11 1.38 4.51 -69.63 -0.31 1.06 16 13 C -0.01 -0.14 7.45 -2.77 -0.02 -0.16 16 14 N -0.45 -6.63 4.08 -239.90 -0.98 -7.61 16 15 C 0.01 0.09 5.31 -4.98 -0.03 0.06 16 16 C 0.45 9.92 7.59 -10.98 -0.08 9.84 16 17 O -0.56 -14.42 15.12 5.55 0.08 -14.34 16 18 N -0.59 -13.78 5.09 -10.96 -0.06 -13.83 16 19 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.49 13.96 55.50 0.77 -24.72 16 23 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 27 C 0.01 0.18 5.99 -2.77 -0.02 0.17 16 28 H 0.22 0.84 7.80 -54.10 -0.42 0.42 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.09 0.58 7.40 -51.93 -0.38 0.19 16 38 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.06 0.49 6.44 -51.93 -0.33 0.15 16 41 H 0.10 1.30 6.07 -51.93 -0.32 0.98 16 42 H 0.11 1.37 7.25 -51.93 -0.38 1.00 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 45 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 0.78 7.69 -51.93 -0.40 0.38 16 47 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.08 1.10 7.78 -51.93 -0.40 0.69 16 50 H 0.10 1.63 7.76 -51.93 -0.40 1.23 16 LS Contribution 411.12 15.07 6.20 6.20 Total: -1.00 -34.35 411.12 -8.31 -42.65 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.30 Total: 9.19 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.85 Total: 3.67 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.80 Total: -53.58 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.17 Total: -22.54 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.35 -8.31 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.930 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds