Wall clock time and date at job start Tue Mar 31 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47731 * 318.20081 * 3 2 1 5 5 C 1.52996 * 109.47839 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47582 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47231 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46844 * 179.97438 * 7 6 5 9 9 O 1.21270 * 120.00381 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99818 * 359.97438 * 10 8 7 12 12 C 1.46494 * 120.00072 * 180.02562 * 10 8 7 13 13 C 1.53937 * 113.73257 * 239.99677 * 12 10 8 14 14 N 1.47955 * 86.18157 * 269.35781 * 13 12 10 15 15 C 1.46896 * 111.00525 * 222.41550 * 14 13 12 16 16 C 1.50703 * 109.47363 * 169.99959 * 15 14 13 17 17 O 1.21288 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99567 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99515 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00564 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47368 * 89.99519 * 23 21 19 25 25 H 1.48498 * 109.47407 * 210.00064 * 23 21 19 26 26 H 1.48505 * 109.46845 * 329.99548 * 23 21 19 27 27 C 1.47961 * 90.76430 * 335.31007 * 14 13 12 28 28 H 4.44655 * 5.63239 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.47038 * 198.20455 * 3 2 1 30 30 H 1.09001 * 109.47381 * 78.20395 * 3 2 1 31 31 H 1.09000 * 109.46912 * 60.00085 * 4 3 2 32 32 H 1.09001 * 109.46944 * 300.00582 * 4 3 2 33 33 H 1.09000 * 109.47067 * 59.99852 * 5 4 3 34 34 H 1.09007 * 109.46635 * 300.00068 * 5 4 3 35 35 H 1.08993 * 109.47019 * 59.99624 * 6 5 4 36 36 H 1.09001 * 109.46709 * 299.99952 * 6 5 4 37 37 H 1.09000 * 109.47351 * 59.99447 * 7 6 5 38 38 H 1.09007 * 109.46702 * 299.99449 * 7 6 5 39 39 H 1.09008 * 109.46984 * 270.00101 * 11 10 8 40 40 H 1.08993 * 109.47005 * 30.00062 * 11 10 8 41 41 H 1.08998 * 109.46819 * 150.00845 * 11 10 8 42 42 H 1.09001 * 113.00985 * 11.62465 * 12 10 8 43 43 H 1.09005 * 113.75745 * 23.67504 * 13 12 10 44 44 H 1.08996 * 113.76539 * 155.04190 * 13 12 10 45 45 H 1.08998 * 109.47190 * 290.00447 * 15 14 13 46 46 H 1.09002 * 109.47036 * 50.00132 * 15 14 13 47 47 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 48 48 H 0.97003 * 120.00028 * 180.02562 * 22 21 19 49 49 H 1.09002 * 113.75838 * 270.37219 * 27 14 13 50 50 H 1.09002 * 113.76303 * 139.00391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.0744 0.9614 5 6 4.6866 -1.0733 0.9619 6 6 5.1971 -2.1489 1.9229 7 6 6.7271 -2.1473 1.9238 8 6 7.2299 -3.2062 2.8708 9 8 6.4422 -3.8941 3.4848 10 7 8.5551 -3.3882 3.0361 11 6 9.5067 -2.5568 2.2947 12 6 9.0439 -4.4180 3.9562 13 6 9.9129 -3.8647 5.1001 14 7 11.0655 -4.0874 4.1995 15 6 12.2003 -4.6673 4.9302 16 6 13.2577 -5.1058 3.9500 17 8 13.0830 -4.9509 2.7598 18 7 14.3975 -5.6700 4.3960 19 6 15.3593 -6.0694 3.5043 20 1 15.2036 -5.9315 2.4445 21 6 16.5345 -6.6506 3.9641 22 7 17.4566 -7.0330 3.1094 23 14 16.8040 -6.8886 5.7972 24 1 16.2798 -8.2163 6.2064 25 1 18.2565 -6.8157 6.0976 26 1 16.0899 -5.8226 6.5449 27 6 10.3167 -5.1324 3.4671 28 1 -1.0498 -0.0001 0.0003 29 1 3.0089 0.9771 0.3211 30 1 3.0095 -0.2093 -1.0060 31 1 2.7938 -2.0508 0.6404 32 1 2.7931 -0.8645 1.9674 33 1 5.0491 -0.0969 1.2831 34 1 5.0503 -1.2831 -0.0441 35 1 4.8346 -3.1251 1.6012 36 1 4.8333 -1.9395 2.9288 37 1 7.0892 -1.1709 2.2456 38 1 7.0912 -2.3564 0.9178 39 1 9.7442 -3.0356 1.3446 40 1 9.0653 -1.5780 2.1079 41 1 10.4186 -2.4386 2.8799 42 1 8.2601 -5.0977 4.2902 43 1 9.7272 -2.8142 5.3241 44 1 9.9221 -4.4952 5.9891 45 1 12.6179 -3.9202 5.6051 46 1 11.8599 -5.5277 5.5064 47 1 14.5371 -5.7943 5.3478 48 1 18.2770 -7.4391 3.4304 49 1 10.4439 -6.1337 3.8785 50 1 10.4535 -5.0948 2.3863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754580059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:30 Heat of formation + Delta-G solvation = -10.295410 kcal Electronic energy + Delta-G solvation = -27747.197547 eV Core-core repulsion = 23776.130465 eV Total energy + Delta-G solvation = -3971.067082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86507 -40.45180 -39.46024 -37.33883 -36.07785 -35.72999 -34.79020 -33.75325 -32.24573 -31.26852 -28.42438 -28.02884 -27.24811 -26.86105 -25.01084 -23.83191 -21.99007 -21.28986 -21.16185 -20.28107 -19.53282 -18.89031 -18.18460 -17.83020 -17.24479 -17.14688 -16.87983 -16.43368 -16.33693 -16.20155 -15.42817 -15.17902 -15.04367 -14.97362 -14.76808 -14.43095 -14.31629 -14.13726 -14.04953 -13.61580 -13.26822 -13.21912 -13.13150 -13.04752 -12.78270 -12.70299 -12.41916 -12.37620 -12.15298 -12.04076 -11.98708 -11.93500 -11.86812 -11.49818 -11.39568 -11.06166 -10.95713 -10.78480 -10.39558 -10.24039 -9.73150 -9.60394 -8.41153 -6.01753 1.30008 1.35067 1.44054 1.61647 1.88161 1.92951 1.96743 1.99187 2.22801 2.65716 3.11026 3.15829 3.46107 3.51956 3.67509 3.78241 3.99355 4.04907 4.12160 4.19512 4.24085 4.30005 4.40082 4.41431 4.45423 4.51392 4.56105 4.61625 4.71103 4.72497 4.76381 4.84689 4.89582 4.92408 4.93424 5.01337 5.10551 5.20514 5.24872 5.29512 5.30461 5.46108 5.53149 5.53569 5.60577 5.87459 5.98581 6.46397 6.59708 6.72677 6.88819 7.17777 7.40419 7.97270 8.76535 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040414 B = 0.001530 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.670622 B =18294.197496 C =18688.512574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.015 4.015 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.101 4.101 7 C -0.132 4.132 8 C 0.507 3.493 9 O -0.587 6.587 10 N -0.592 5.592 11 C 0.074 3.926 12 C 0.114 3.886 13 C 0.004 3.996 14 N -0.468 5.468 15 C 0.017 3.983 16 C 0.452 3.548 17 O -0.606 6.606 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.055 0.945 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.231 1.231 27 C 0.009 3.991 28 H 0.239 0.761 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.078 0.922 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.640 14.364 3.322 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.051 4.051 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.139 4.139 7 C -0.171 4.171 8 C 0.298 3.702 9 O -0.468 6.468 10 N -0.323 5.323 11 C -0.068 4.068 12 C 0.009 3.991 13 C -0.125 4.125 14 N -0.192 5.192 15 C -0.115 4.115 16 C 0.240 3.760 17 O -0.490 6.490 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.212 4.212 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.154 1.154 27 C -0.121 4.121 28 H 0.255 0.745 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.138 0.862 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.633 14.587 2.432 30.463 hybrid contribution 0.550 -1.458 0.942 1.821 sum -26.082 13.129 3.374 29.395 Atomic orbital electron populations 1.25706 0.97095 1.00610 1.00675 1.23928 0.95895 1.00898 1.00878 1.18886 0.83580 1.01023 1.01645 1.21484 0.96067 0.98246 0.99118 1.21561 0.94046 0.99240 1.00025 1.21290 0.93001 0.99443 1.00164 1.21774 0.97467 0.98244 0.99602 1.21509 0.81163 0.84895 0.82622 1.90656 1.55877 1.49824 1.50399 1.47644 1.06173 1.35520 1.42968 1.22023 0.94019 0.94555 0.96197 1.22363 0.95392 0.90648 0.90745 1.24504 0.88618 1.03829 0.95595 1.68425 1.02554 1.31508 1.16682 1.22486 0.92589 1.01287 0.95101 1.20824 0.83856 0.81347 0.89975 1.90540 1.79966 1.59306 1.19191 1.42056 1.16615 1.56491 1.08350 1.18996 0.97275 1.38548 0.90818 0.92641 1.26077 0.94363 0.95892 1.04879 1.69804 1.08844 1.41567 1.37396 0.85392 0.79058 0.80395 0.76859 1.18279 1.20112 1.15406 1.24124 0.91851 0.95070 1.01012 0.74492 0.88257 0.88482 0.92606 0.92313 0.89957 0.90404 0.93125 0.92595 0.86249 0.87131 0.93434 0.88328 0.89617 0.87955 0.87995 0.88045 0.86177 0.89381 0.77576 0.91200 0.90365 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.04 19.25 74.32 1.43 -1.61 16 2 C -0.22 -3.25 13.34 31.12 0.42 -2.84 16 3 C -0.01 -0.15 5.70 28.79 0.16 0.01 16 4 C -0.11 -1.24 5.17 30.59 0.16 -1.08 16 5 C -0.11 -0.99 5.21 30.59 0.16 -0.83 16 6 C -0.10 -1.45 4.50 30.59 0.14 -1.31 16 7 C -0.13 -1.77 4.25 29.85 0.13 -1.65 16 8 C 0.51 11.38 7.67 87.66 0.67 12.05 16 9 O -0.59 -17.65 15.47 -3.00 -0.05 -17.69 16 10 N -0.59 -13.11 3.09 -826.84 -2.56 -15.66 16 11 C 0.07 1.45 9.19 127.77 1.17 2.62 16 12 C 0.11 2.70 4.51 46.56 0.21 2.91 16 13 C 0.00 0.08 7.45 86.41 0.64 0.72 16 14 N -0.47 -12.90 4.08 -912.90 -3.72 -16.62 16 15 C 0.02 0.48 5.31 85.56 0.45 0.94 16 16 C 0.45 19.68 7.59 87.66 0.67 20.35 16 17 O -0.61 -32.31 15.12 -3.05 -0.05 -32.36 16 18 N -0.59 -27.32 5.09 -306.99 -1.56 -28.89 16 19 C -0.33 -18.91 10.16 84.04 0.85 -18.06 16 20 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 22 N -0.94 -56.05 13.96 21.66 0.30 -55.75 16 23 Si 0.96 38.27 27.74 68.60 1.90 40.18 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 25 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 27 C 0.01 0.26 5.99 86.41 0.52 0.78 16 28 H 0.24 1.58 7.80 -4.43 -0.03 1.54 16 29 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.12 1.03 7.40 -2.39 -0.02 1.01 16 38 H 0.11 1.18 8.11 -2.38 -0.02 1.16 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.10 1.20 6.44 -2.39 -0.02 1.19 16 41 H 0.09 2.05 6.07 -2.39 -0.01 2.03 16 42 H 0.10 2.55 7.25 -2.39 -0.02 2.53 16 43 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.10 1.60 7.79 -2.39 -0.02 1.58 16 45 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.09 2.04 7.69 -2.39 -0.02 2.02 16 47 H 0.39 14.79 5.76 -92.71 -0.53 14.26 16 48 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.08 2.18 7.78 -2.39 -0.02 2.16 16 50 H 0.07 2.40 7.76 -2.39 -0.02 2.39 16 Total: -1.00 -81.62 411.12 2.86 -78.77 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.33 Total: 35.29 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 8.25 Total: 12.73 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -7.54 Total: -116.92 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.09 Total: -50.05 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.18 kcal Total: -81.62 2.86 -78.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.470 kcal (2) G-P(sol) polarization free energy of solvation -81.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds