Wall clock time and date at job start Tue Mar 31 2020 18:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99995 * 2 1 4 4 C 1.46896 * 110.99723 * 123.95615 * 2 1 3 5 5 H 1.08998 * 109.47136 * 192.62337 * 4 2 1 6 6 C 1.50697 * 109.47444 * 72.62006 * 4 2 1 7 7 O 1.21281 * 119.99916 * 334.51538 * 6 4 2 8 8 N 1.34774 * 120.00222 * 154.51642 * 6 4 2 9 9 C 1.46504 * 119.99979 * 5.23579 * 8 6 4 10 10 C 1.53006 * 109.46993 * 91.82522 * 9 8 6 11 11 O 1.42906 * 109.46853 * 64.90221 * 10 9 8 12 12 C 1.46504 * 120.00056 * 185.23853 * 8 6 4 13 13 C 1.52994 * 109.47075 * 90.00118 * 12 8 6 14 14 N 1.46497 * 109.47358 * 180.02562 * 13 12 8 15 15 C 1.36936 * 120.00409 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99991 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99990 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99901 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00324 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46891 * 90.00045 * 19 17 15 21 21 H 1.48497 * 109.47316 * 210.00283 * 19 17 15 22 22 H 1.48500 * 109.47185 * 330.00324 * 19 17 15 23 23 C 1.50707 * 109.47075 * 312.61828 * 4 2 1 24 24 C 1.38226 * 120.00328 * 251.60420 * 23 4 2 25 25 C 1.38241 * 120.00392 * 179.97438 * 24 23 4 26 26 C 1.38227 * 119.99496 * 359.97438 * 25 24 23 27 27 C 1.38236 * 120.00166 * 359.97438 * 26 25 24 28 28 C 1.38229 * 120.00303 * 0.07258 * 27 26 25 29 29 H 1.08994 * 109.47058 * 303.41124 * 1 2 3 30 30 H 1.09002 * 109.46822 * 63.40759 * 1 2 3 31 31 H 1.09003 * 109.47199 * 183.40363 * 1 2 3 32 32 H 1.09002 * 109.46912 * 183.95052 * 3 2 1 33 33 H 1.08997 * 109.47496 * 303.95445 * 3 2 1 34 34 H 1.09006 * 109.47028 * 63.95358 * 3 2 1 35 35 H 1.09001 * 109.47089 * 211.82168 * 9 8 6 36 36 H 1.08994 * 109.46916 * 331.83165 * 9 8 6 37 37 H 1.08997 * 109.47125 * 184.90597 * 10 9 8 38 38 H 1.08996 * 109.47264 * 304.90609 * 10 9 8 39 39 H 0.96702 * 113.99663 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46728 * 209.99670 * 12 8 6 41 41 H 1.08992 * 109.47064 * 329.99683 * 12 8 6 42 42 H 1.09005 * 109.47116 * 299.99823 * 13 12 8 43 43 H 1.08997 * 109.47679 * 59.99411 * 13 12 8 44 44 H 0.97003 * 120.00054 * 359.97438 * 14 13 12 45 45 H 0.96999 * 120.00031 * 179.97438 * 18 17 15 46 46 H 1.08009 * 119.99852 * 359.97438 * 24 23 4 47 47 H 1.08001 * 119.99730 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.00017 * 179.72282 * 26 25 24 49 49 H 1.08005 * 119.99463 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00180 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0618 -0.5685 1.2463 6 6 1.7792 -2.2376 0.8954 7 8 0.8811 -2.6071 0.1689 8 7 2.5838 -3.1431 1.4861 9 6 3.5943 -2.7052 2.4523 10 6 3.0036 -2.7484 3.8631 11 8 2.7045 -4.1013 4.2129 12 6 2.4480 -4.5654 1.1622 13 6 3.3571 -4.9083 -0.0197 14 7 3.2209 -6.3304 -0.3442 15 6 3.9431 -6.8698 -1.3749 16 1 4.6129 -6.2468 -1.9491 17 6 3.8136 -8.2172 -1.6826 18 7 4.5075 -8.7356 -2.6737 19 14 2.6546 -9.2947 -0.6901 20 1 1.3070 -9.2777 -1.3138 21 1 3.1715 -10.6866 -0.6660 22 1 2.5639 -8.7763 0.6985 23 6 1.2772 -0.3532 2.3965 24 6 1.9354 0.3958 3.3538 25 6 1.2764 0.7749 4.5084 26 6 -0.0409 0.4053 4.7053 27 6 -0.6994 -0.3429 3.7475 28 6 -0.0402 -0.7228 2.5934 29 1 -0.3633 0.5658 0.8578 30 1 -0.3633 0.4600 -0.9190 31 1 -0.3634 -1.0259 0.0610 32 1 3.0828 1.3432 -0.0708 33 1 1.5899 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 4.4584 -3.3676 2.3997 36 1 3.9027 -1.6862 2.2187 37 1 3.7247 -2.3408 4.5715 38 1 2.0899 -2.1550 3.8927 39 1 2.3262 -4.2045 5.0968 40 1 2.7349 -5.1640 2.0267 41 1 1.4126 -4.7808 0.8986 42 1 3.0702 -4.3097 -0.8844 43 1 4.3925 -4.6929 0.2438 44 1 2.6190 -6.8900 0.1712 45 1 4.4173 -9.6772 -2.8885 46 1 2.9646 0.6849 3.1997 47 1 1.7906 1.3605 5.2561 48 1 -0.5544 0.6976 5.6094 49 1 -1.7286 -0.6320 3.9017 50 1 -0.5547 -1.3077 1.8453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754898151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:32 Heat of formation + Delta-G solvation = -9.408962 kcal Electronic energy + Delta-G solvation = -30707.710145 eV Core-core repulsion = 26736.681502 eV Total energy + Delta-G solvation = -3971.028643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11598 -39.07390 -37.53251 -36.70676 -35.54525 -34.42346 -32.09991 -31.39633 -31.37413 -29.67307 -28.67523 -27.67911 -27.02356 -23.71877 -23.26167 -22.90359 -22.77509 -21.73974 -20.98365 -18.97865 -17.91781 -17.48158 -17.26750 -16.98850 -16.55323 -16.04058 -15.62946 -15.18890 -14.72106 -14.64309 -14.52655 -14.47314 -14.04639 -13.88835 -13.72355 -13.53811 -13.41932 -12.98494 -12.89380 -12.63918 -12.62861 -12.49712 -12.26488 -11.94024 -11.89375 -11.68756 -11.47449 -11.35826 -11.13090 -10.99415 -10.95007 -10.61120 -10.23059 -10.08283 -9.70753 -9.51582 -9.26247 -9.04301 -8.80146 -8.55784 -8.43108 -7.14368 -5.68139 -3.03381 0.89320 1.02212 2.65577 2.92404 3.35820 3.45931 3.49601 3.52603 3.89091 4.02249 4.26485 4.38362 4.55115 4.64430 4.68104 4.75709 4.78083 4.93262 5.03918 5.04591 5.11654 5.12380 5.14617 5.25400 5.32076 5.46554 5.47642 5.55472 5.57664 5.58753 5.63503 5.65906 5.73063 5.80394 5.90837 6.02260 6.06178 6.15891 6.16674 6.18644 6.53788 6.59187 6.66873 6.76808 6.82675 6.94754 7.42273 7.55987 8.07921 8.30159 8.50604 9.29725 10.02146 10.22164 11.50405 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.003226 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.839875 B = 8676.412025 C = 9432.187699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.514 5.514 3 C 0.022 3.978 4 C 0.103 3.897 5 H 0.107 0.893 6 C 0.527 3.473 7 O -0.518 6.518 8 N -0.595 5.595 9 C 0.106 3.894 10 C 0.056 3.944 11 O -0.562 6.562 12 C 0.109 3.891 13 C 0.147 3.853 14 N -0.753 5.753 15 C -0.239 4.239 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.936 5.936 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.113 4.113 24 C -0.106 4.106 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.099 4.099 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.375 0.625 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.024 0.976 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 25.220 19.642 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.236 5.236 3 C -0.126 4.126 4 C -0.009 4.009 5 H 0.125 0.875 6 C 0.313 3.687 7 O -0.393 6.393 8 N -0.328 5.328 9 C -0.018 4.018 10 C -0.023 4.023 11 O -0.367 6.367 12 C -0.013 4.013 13 C 0.019 3.981 14 N -0.399 5.399 15 C -0.369 4.369 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.202 1.202 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.139 4.139 28 C -0.118 4.118 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.222 0.778 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.898 24.660 17.967 31.281 hybrid contribution -1.110 -0.207 1.994 2.292 sum -8.007 24.453 19.962 32.566 Atomic orbital electron populations 1.22961 0.86451 1.04305 1.00314 1.62059 1.09464 1.13497 1.38582 1.22462 1.00759 0.88514 1.00868 1.20735 1.00030 0.92596 0.87508 0.87512 1.20103 0.81831 0.87017 0.79703 1.90646 1.31265 1.80496 1.36853 1.47683 1.35325 1.07677 1.42070 1.21719 0.91998 1.01370 0.86725 1.22767 0.99324 0.84133 0.96053 1.86569 1.85810 1.26238 1.38099 1.21724 1.01678 0.78951 0.98948 1.20896 0.96274 0.86377 0.94600 1.42552 1.52906 1.04928 1.39488 1.19046 1.18154 0.93410 1.06308 0.89266 1.24659 0.99702 0.96631 0.98267 1.69710 1.44634 1.12960 1.31142 0.86525 0.81353 0.80388 0.80198 1.21026 1.21763 1.20241 1.20162 0.95354 1.00004 0.96038 1.21040 0.99801 0.98012 0.93657 1.21110 0.94966 1.00517 0.97543 1.21203 0.94937 0.98119 0.99095 1.21188 1.00231 0.98576 0.93921 1.21427 0.94272 0.98627 0.97454 0.95180 0.91581 0.88404 0.91234 0.90869 0.95304 0.88913 0.89273 0.93052 0.93025 0.77816 0.89499 0.90132 0.95237 0.95781 0.80663 0.93126 0.85943 0.85925 0.86087 0.85901 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 7.73 60.07 0.46 0.55 16 2 N -0.51 -6.07 4.80 -246.00 -1.18 -7.25 16 3 C 0.02 0.19 9.40 60.06 0.56 0.76 16 4 C 0.10 1.14 1.72 -70.02 -0.12 1.02 16 5 H 0.11 0.99 5.76 -51.93 -0.30 0.69 16 6 C 0.53 7.86 6.09 -10.99 -0.07 7.79 16 7 O -0.52 -9.63 13.33 5.56 0.07 -9.56 16 8 N -0.59 -8.53 2.44 -173.69 -0.42 -8.96 16 9 C 0.11 1.12 5.62 -4.04 -0.02 1.09 16 10 C 0.06 0.51 7.30 37.16 0.27 0.78 16 11 O -0.56 -6.09 12.31 -35.23 -0.43 -6.53 16 12 C 0.11 1.94 5.38 -4.04 -0.02 1.92 16 13 C 0.15 3.16 6.58 -4.05 -0.03 3.14 16 14 N -0.75 -19.39 5.41 -59.91 -0.32 -19.71 16 15 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 16 H 0.09 2.86 8.06 -52.48 -0.42 2.44 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.94 -30.51 13.97 55.49 0.78 -29.74 16 19 Si 0.89 23.13 27.73 -169.99 -4.71 18.41 16 20 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 22 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 23 C -0.11 -1.06 2.18 -104.62 -0.23 -1.28 16 24 C -0.11 -0.77 8.73 -39.58 -0.35 -1.11 16 25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 26 C -0.12 -0.81 10.05 -39.59 -0.40 -1.20 16 27 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 28 C -0.10 -1.00 6.68 -39.58 -0.26 -1.27 16 29 H 0.03 0.31 5.92 -51.93 -0.31 0.01 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.36 4.36 -51.93 -0.23 1.13 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.23 7.53 -51.93 -0.39 -0.16 16 35 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.09 0.70 5.74 -51.93 -0.30 0.40 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.48 5.69 -51.93 -0.30 0.19 16 39 H 0.38 2.50 9.12 45.56 0.42 2.91 16 40 H 0.09 1.52 6.95 -51.93 -0.36 1.16 16 41 H 0.08 1.56 7.36 -51.93 -0.38 1.18 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.36 9.02 5.53 -40.82 -0.23 8.80 16 45 H 0.26 7.99 8.31 -40.82 -0.34 7.66 16 46 H 0.12 0.65 7.98 -52.48 -0.42 0.23 16 47 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 49 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 50 H 0.13 1.57 5.39 -52.49 -0.28 1.28 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -37.24 388.99 -8.49 -45.73 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.88 Total: 9.53 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.24 Total: 2.20 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -1.15 Total: -65.66 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.36 Total: -16.08 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.71 Total: 18.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.24 -8.49 -45.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754898151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.325 kcal (2) G-P(sol) polarization free energy of solvation -37.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds