Wall clock time and date at job start Tue Mar 31 2020 18:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99995 * 2 1 4 4 C 1.46896 * 110.99723 * 123.95615 * 2 1 3 5 5 H 1.08998 * 109.47136 * 192.62337 * 4 2 1 6 6 C 1.50697 * 109.47444 * 72.62006 * 4 2 1 7 7 O 1.21281 * 119.99916 * 334.51538 * 6 4 2 8 8 N 1.34774 * 120.00222 * 154.51642 * 6 4 2 9 9 C 1.46504 * 119.99979 * 5.23579 * 8 6 4 10 10 C 1.53006 * 109.46993 * 91.82522 * 9 8 6 11 11 O 1.42906 * 109.46853 * 64.90221 * 10 9 8 12 12 C 1.46504 * 120.00056 * 185.23853 * 8 6 4 13 13 C 1.52994 * 109.47075 * 90.00118 * 12 8 6 14 14 N 1.46497 * 109.47358 * 180.02562 * 13 12 8 15 15 C 1.36936 * 120.00409 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99991 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99990 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99901 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00324 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46891 * 90.00045 * 19 17 15 21 21 H 1.48497 * 109.47316 * 210.00283 * 19 17 15 22 22 H 1.48500 * 109.47185 * 330.00324 * 19 17 15 23 23 C 1.50707 * 109.47075 * 312.61828 * 4 2 1 24 24 C 1.38226 * 120.00328 * 251.60420 * 23 4 2 25 25 C 1.38241 * 120.00392 * 179.97438 * 24 23 4 26 26 C 1.38227 * 119.99496 * 359.97438 * 25 24 23 27 27 C 1.38236 * 120.00166 * 359.97438 * 26 25 24 28 28 C 1.38229 * 120.00303 * 0.07258 * 27 26 25 29 29 H 1.08994 * 109.47058 * 303.41124 * 1 2 3 30 30 H 1.09002 * 109.46822 * 63.40759 * 1 2 3 31 31 H 1.09003 * 109.47199 * 183.40363 * 1 2 3 32 32 H 1.09002 * 109.46912 * 183.95052 * 3 2 1 33 33 H 1.08997 * 109.47496 * 303.95445 * 3 2 1 34 34 H 1.09006 * 109.47028 * 63.95358 * 3 2 1 35 35 H 1.09001 * 109.47089 * 211.82168 * 9 8 6 36 36 H 1.08994 * 109.46916 * 331.83165 * 9 8 6 37 37 H 1.08997 * 109.47125 * 184.90597 * 10 9 8 38 38 H 1.08996 * 109.47264 * 304.90609 * 10 9 8 39 39 H 0.96702 * 113.99663 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46728 * 209.99670 * 12 8 6 41 41 H 1.08992 * 109.47064 * 329.99683 * 12 8 6 42 42 H 1.09005 * 109.47116 * 299.99823 * 13 12 8 43 43 H 1.08997 * 109.47679 * 59.99411 * 13 12 8 44 44 H 0.97003 * 120.00054 * 359.97438 * 14 13 12 45 45 H 0.96999 * 120.00031 * 179.97438 * 18 17 15 46 46 H 1.08009 * 119.99852 * 359.97438 * 24 23 4 47 47 H 1.08001 * 119.99730 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.00017 * 179.72282 * 26 25 24 49 49 H 1.08005 * 119.99463 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00180 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0618 -0.5685 1.2463 6 6 1.7792 -2.2376 0.8954 7 8 0.8811 -2.6071 0.1689 8 7 2.5838 -3.1431 1.4861 9 6 3.5943 -2.7052 2.4523 10 6 3.0036 -2.7484 3.8631 11 8 2.7045 -4.1013 4.2129 12 6 2.4480 -4.5654 1.1622 13 6 3.3571 -4.9083 -0.0197 14 7 3.2209 -6.3304 -0.3442 15 6 3.9431 -6.8698 -1.3749 16 1 4.6129 -6.2468 -1.9491 17 6 3.8136 -8.2172 -1.6826 18 7 4.5075 -8.7356 -2.6737 19 14 2.6546 -9.2947 -0.6901 20 1 1.3070 -9.2777 -1.3138 21 1 3.1715 -10.6866 -0.6660 22 1 2.5639 -8.7763 0.6985 23 6 1.2772 -0.3532 2.3965 24 6 1.9354 0.3958 3.3538 25 6 1.2764 0.7749 4.5084 26 6 -0.0409 0.4053 4.7053 27 6 -0.6994 -0.3429 3.7475 28 6 -0.0402 -0.7228 2.5934 29 1 -0.3633 0.5658 0.8578 30 1 -0.3633 0.4600 -0.9190 31 1 -0.3634 -1.0259 0.0610 32 1 3.0828 1.3432 -0.0708 33 1 1.5899 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 4.4584 -3.3676 2.3997 36 1 3.9027 -1.6862 2.2187 37 1 3.7247 -2.3408 4.5715 38 1 2.0899 -2.1550 3.8927 39 1 2.3262 -4.2045 5.0968 40 1 2.7349 -5.1640 2.0267 41 1 1.4126 -4.7808 0.8986 42 1 3.0702 -4.3097 -0.8844 43 1 4.3925 -4.6929 0.2438 44 1 2.6190 -6.8900 0.1712 45 1 4.4173 -9.6772 -2.8885 46 1 2.9646 0.6849 3.1997 47 1 1.7906 1.3605 5.2561 48 1 -0.5544 0.6976 5.6094 49 1 -1.7286 -0.6320 3.9017 50 1 -0.5547 -1.3077 1.8453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754898151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:31 Heat of formation + Delta-G solvation = -39.020817 kcal Electronic energy + Delta-G solvation = -30708.994211 eV Core-core repulsion = 26736.681502 eV Total energy + Delta-G solvation = -3972.312709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01352 -39.94607 -38.40457 -37.56033 -37.08573 -35.94780 -33.77997 -32.60826 -31.96680 -30.97626 -29.68208 -28.52065 -28.21292 -25.45924 -24.11185 -23.68188 -23.40105 -23.34233 -22.15955 -20.18665 -19.51964 -18.73152 -18.05535 -17.78540 -17.66071 -16.72899 -16.69444 -16.32406 -16.16056 -15.75087 -15.54505 -15.45131 -15.32590 -15.09311 -14.89936 -14.71145 -14.51343 -14.32421 -13.80502 -13.62798 -13.52983 -13.46113 -13.34552 -13.02292 -13.01331 -12.89416 -12.61740 -12.58588 -12.52221 -12.19552 -12.09210 -12.07618 -11.84576 -11.79956 -11.03893 -10.98568 -10.71752 -9.85761 -9.76445 -9.63606 -9.38133 -9.31762 -8.06596 -5.42074 0.30511 0.45532 1.35838 1.40472 1.47341 1.56117 1.84186 2.45920 2.75819 3.05788 3.24217 3.35242 3.44612 3.63057 3.73447 3.82634 4.07136 4.10124 4.16017 4.16832 4.25169 4.27004 4.30504 4.36247 4.44231 4.48275 4.56291 4.57839 4.63183 4.66546 4.71572 4.72629 4.88356 4.97903 5.00444 5.02342 5.04141 5.09309 5.14631 5.49424 5.51229 5.56605 5.60088 5.69599 5.85010 6.02919 6.04667 6.16557 6.41823 6.94064 7.01217 7.17360 7.75233 7.96574 9.14817 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.003226 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.839875 B = 8676.412025 C = 9432.187699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.113 3.887 5 H 0.130 0.870 6 C 0.519 3.481 7 O -0.566 6.566 8 N -0.595 5.595 9 C 0.095 3.905 10 C 0.061 3.939 11 O -0.590 6.590 12 C 0.129 3.871 13 C 0.152 3.848 14 N -0.754 5.754 15 C -0.241 4.241 16 H 0.054 0.946 17 C -0.061 4.061 18 N -0.982 5.982 19 Si 0.958 3.042 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.250 1.250 23 C -0.119 4.119 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.392 0.608 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.004 0.996 43 H 0.032 0.968 44 H 0.367 0.633 45 H 0.260 0.740 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.143 0.857 49 H 0.127 0.873 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 27.335 23.389 36.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.264 5.264 3 C -0.123 4.123 4 C 0.002 3.998 5 H 0.148 0.852 6 C 0.307 3.693 7 O -0.444 6.444 8 N -0.327 5.327 9 C -0.027 4.027 10 C -0.017 4.017 11 O -0.398 6.398 12 C 0.005 3.995 13 C 0.025 3.975 14 N -0.401 5.401 15 C -0.372 4.372 16 H 0.072 0.928 17 C -0.252 4.252 18 N -0.632 5.632 19 Si 0.784 3.216 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.174 1.174 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.241 0.759 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.050 0.950 44 H 0.200 0.800 45 H 0.069 0.931 46 H 0.167 0.833 47 H 0.170 0.830 48 H 0.161 0.839 49 H 0.145 0.855 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.539 26.834 21.777 35.172 hybrid contribution -1.183 -0.773 0.801 1.624 sum -7.723 26.062 22.578 35.336 Atomic orbital electron populations 1.22773 0.86998 1.02587 1.00697 1.62006 1.09301 1.15448 1.39616 1.22500 1.01447 0.86759 1.01562 1.20653 1.01385 0.89427 0.88334 0.85247 1.20958 0.80889 0.88829 0.78582 1.90628 1.33272 1.81545 1.38944 1.47760 1.36150 1.06035 1.42723 1.22106 0.90799 1.02859 0.86897 1.22770 0.99968 0.83539 0.95454 1.86511 1.86173 1.27412 1.39721 1.21267 0.99245 0.81704 0.97317 1.20938 0.97514 0.83824 0.95233 1.42520 1.52391 1.06606 1.38559 1.18994 1.17786 0.93415 1.06957 0.92833 1.25536 1.01847 0.98163 0.99690 1.69887 1.46643 1.13475 1.33155 0.85373 0.78512 0.78020 0.79713 1.20659 1.21347 1.17404 1.19970 0.94930 1.01321 0.95890 1.21296 1.00881 0.96794 0.92926 1.21466 0.94648 0.99721 0.97643 1.21504 0.95416 0.97021 0.99210 1.21311 1.00685 0.99130 0.93834 1.21280 0.95085 0.99680 0.97803 0.94154 0.91583 0.91314 0.89856 0.90687 0.94138 0.89454 0.86166 0.89701 0.93229 0.75882 0.88620 0.92253 0.97830 0.95027 0.79989 0.93078 0.83279 0.83008 0.83915 0.85515 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 7.73 127.69 0.99 1.40 16 2 N -0.54 -12.54 4.80 -932.21 -4.47 -17.01 16 3 C 0.02 0.38 9.40 127.69 1.20 1.58 16 4 C 0.11 2.38 1.72 43.42 0.07 2.45 16 5 H 0.13 2.02 5.76 -2.39 -0.01 2.00 16 6 C 0.52 15.71 6.09 87.66 0.53 16.24 16 7 O -0.57 -22.39 13.33 -3.03 -0.04 -22.43 16 8 N -0.59 -16.85 2.44 -821.82 -2.01 -18.86 16 9 C 0.10 1.79 5.62 86.38 0.49 2.28 16 10 C 0.06 0.91 7.30 71.98 0.53 1.44 16 11 O -0.59 -11.47 12.31 -148.98 -1.83 -13.30 16 12 C 0.13 4.61 5.38 86.38 0.46 5.08 16 13 C 0.15 6.73 6.58 86.38 0.57 7.29 16 14 N -0.75 -39.31 5.41 -343.46 -1.86 -41.16 16 15 C -0.24 -14.88 10.47 84.03 0.88 -14.00 16 16 H 0.05 3.61 8.06 -2.91 -0.02 3.59 16 17 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.98 -65.50 13.97 21.65 0.30 -65.20 16 19 Si 0.96 47.91 27.73 68.60 1.90 49.81 16 20 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.25 -11.30 6.52 99.48 0.65 -10.65 16 23 C -0.12 -1.99 2.18 -19.87 -0.04 -2.03 16 24 C -0.10 -1.03 8.73 22.27 0.19 -0.84 16 25 C -0.12 -0.99 10.05 22.27 0.22 -0.77 16 26 C -0.11 -1.21 10.05 22.27 0.22 -0.98 16 27 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 28 C -0.12 -2.40 6.68 22.27 0.15 -2.25 16 29 H 0.04 0.86 5.92 -2.39 -0.01 0.85 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 2.09 4.36 -2.39 -0.01 2.08 16 32 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.53 7.53 -2.38 -0.02 0.51 16 35 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 36 H 0.12 1.45 5.74 -2.39 -0.01 1.43 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.78 5.69 -2.39 -0.01 0.77 16 39 H 0.39 4.30 9.12 -74.06 -0.68 3.62 16 40 H 0.10 3.27 6.95 -2.39 -0.02 3.26 16 41 H 0.06 2.38 7.36 -2.39 -0.02 2.37 16 42 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.37 18.12 5.53 -92.71 -0.51 17.61 16 45 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 46 H 0.15 0.73 7.98 -2.91 -0.02 0.71 16 47 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 48 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 49 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 50 H 0.10 2.63 5.39 -2.91 -0.02 2.61 16 Total: -1.00 -84.92 388.99 -1.13 -86.05 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.28 Total: 30.33 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 7.16 Total: 11.78 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -8.04 Total: -142.24 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.87 Total: -35.74 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.90 Total: 49.81 kcal Total: -84.92 -1.13 -86.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754898151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.033 kcal (2) G-P(sol) polarization free energy of solvation -84.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds