Wall clock time and date at job start Tue Mar 31 2020 18:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35676 * 117.00126 * 2 1 4 4 C 1.38915 * 119.68631 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.11387 * 180.02562 * 4 3 2 6 6 C 1.38828 * 118.48072 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35387 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46882 * 90.00137 * 7 6 5 9 9 C 1.50701 * 109.47410 * 180.02562 * 8 7 6 10 10 O 1.21286 * 119.99659 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00560 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99636 * 0.02562 * 11 9 8 13 13 C 1.46502 * 119.99957 * 180.02562 * 11 9 8 14 14 C 1.53000 * 109.47119 * 90.00420 * 13 11 9 15 15 C 1.52995 * 109.47114 * 179.97438 * 14 13 11 16 16 N 1.46501 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00029 * 269.99893 * 16 15 14 18 18 C 1.36942 * 119.99869 * 90.00341 * 16 15 14 19 19 H 1.07994 * 120.00200 * 22.34138 * 18 16 15 20 20 C 1.38813 * 119.99800 * 202.34114 * 18 16 15 21 21 N 1.31625 * 120.00023 * 11.35779 * 20 18 16 22 22 Si 1.86796 * 120.00039 * 191.35004 * 20 18 16 23 23 H 1.48503 * 109.46924 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46884 * 119.99920 * 22 20 18 25 25 H 1.48493 * 109.47585 * 240.00246 * 22 20 18 26 26 C 1.38050 * 119.29248 * 0.25715 * 6 5 4 27 27 N 1.31963 * 120.83257 * 359.45353 * 26 6 5 28 28 H 1.08998 * 109.47065 * 299.99891 * 1 2 3 29 29 H 1.09006 * 109.46986 * 60.00324 * 1 2 3 30 30 H 1.09001 * 109.46854 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.44402 * 0.02562 * 4 3 2 32 32 H 1.07991 * 120.75862 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47736 * 210.00195 * 7 6 5 34 34 H 1.08996 * 109.47283 * 330.00489 * 7 6 5 35 35 H 1.09001 * 109.47340 * 299.99901 * 8 7 6 36 36 H 1.09001 * 109.47376 * 60.00615 * 8 7 6 37 37 H 1.08998 * 109.46852 * 90.00132 * 12 11 9 38 38 H 1.09000 * 109.47095 * 209.99771 * 12 11 9 39 39 H 1.09001 * 109.47179 * 329.99880 * 12 11 9 40 40 H 1.09006 * 109.46670 * 209.99754 * 13 11 9 41 41 H 1.08994 * 109.47088 * 330.00029 * 13 11 9 42 42 H 1.08997 * 109.46691 * 299.99369 * 14 13 11 43 43 H 1.08997 * 109.47209 * 59.99397 * 14 13 11 44 44 H 1.08999 * 109.47576 * 300.00021 * 15 14 13 45 45 H 1.08997 * 109.47318 * 59.99777 * 15 14 13 46 46 H 1.09000 * 109.47005 * 94.20973 * 17 16 15 47 47 H 1.09000 * 109.47114 * 214.20631 * 17 16 15 48 48 H 1.08997 * 109.47397 * 334.20732 * 17 16 15 49 49 H 0.96995 * 120.00112 * 180.02562 * 21 20 18 50 50 H 1.08000 * 119.57922 * 179.72227 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5132 0.0000 6 6 3.2504 3.6491 0.0005 7 6 3.8767 5.0198 0.0017 8 6 4.0891 5.4847 -1.4404 9 6 4.7159 6.8551 -1.4393 10 8 4.9684 7.4056 -0.3885 11 7 4.9960 7.4691 -2.6060 12 6 4.6905 6.8043 -3.8753 13 6 5.6059 8.8011 -2.6048 14 6 7.1298 8.6643 -2.6057 15 6 7.7667 10.0553 -2.6051 16 7 9.2258 9.9243 -2.6053 17 6 9.9556 9.8582 -1.3367 18 6 9.9076 9.8637 -3.7914 19 1 9.4621 10.2611 -4.6913 20 6 11.1715 9.2914 -3.8370 21 7 11.6235 8.6110 -2.8048 22 14 12.2307 9.4867 -5.3631 23 1 11.4981 10.2900 -6.3747 24 1 13.4946 10.1784 -5.0032 25 1 12.5418 8.1476 -5.9245 26 6 1.8770 3.5097 0.0059 27 7 1.3185 2.3140 -0.0003 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0228 0.3695 -0.0014 32 1 5.1253 2.5947 -0.0008 33 1 3.2181 5.7198 0.5158 34 1 4.8370 4.9801 0.5158 35 1 4.7477 4.7847 -1.9545 36 1 3.1287 5.5245 -1.9545 37 1 3.6803 7.0673 -4.1892 38 1 5.4025 7.1268 -4.6349 39 1 4.7612 5.7243 -3.7461 40 1 5.2896 9.3462 -3.4942 41 1 5.2903 9.3444 -1.7142 42 1 7.4460 8.1191 -1.7164 43 1 7.4453 8.1209 -3.4963 44 1 7.4504 10.6002 -3.4945 45 1 7.4512 10.5990 -1.7147 46 1 10.1099 8.8152 -1.0603 47 1 10.9212 10.3516 -1.4469 48 1 9.3785 10.3586 -0.5591 49 1 12.5067 8.2115 -2.8365 50 1 1.2517 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755040543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:02 Heat of formation + Delta-G solvation = -19.961038 kcal Electronic energy + Delta-G solvation = -28027.460517 eV Core-core repulsion = 24055.974302 eV Total energy + Delta-G solvation = -3971.486215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.99136 -39.84594 -38.37059 -36.28701 -35.26388 -34.41953 -32.59365 -32.22587 -30.52811 -29.62281 -27.66736 -26.92352 -25.96545 -25.66498 -24.29139 -23.71988 -22.26490 -21.44506 -20.15646 -18.97612 -18.73365 -17.46588 -17.17221 -16.70191 -16.33839 -15.99603 -15.75942 -15.27399 -14.83011 -14.70753 -14.67054 -14.09902 -13.95263 -13.89038 -13.50227 -13.42741 -13.22720 -12.83553 -12.74187 -12.67023 -12.50397 -12.34083 -12.12689 -11.85658 -11.51785 -11.43106 -11.32003 -11.23755 -10.87965 -10.82659 -10.64835 -10.39429 -10.19393 -10.00718 -9.94079 -9.87837 -9.69283 -9.64863 -8.68652 -8.56962 -8.47529 -6.69577 -5.67894 -3.13366 0.81153 0.93566 2.72027 2.75887 3.09202 3.38370 3.44097 3.45296 3.47331 3.98042 4.33175 4.52860 4.60333 4.64379 4.69585 4.85625 4.90209 4.95162 4.96346 4.99835 5.09561 5.25270 5.29208 5.33753 5.35305 5.45530 5.47888 5.56223 5.58761 5.65791 5.69520 5.89965 5.90269 6.07214 6.09248 6.13147 6.16971 6.29379 6.53671 6.71642 6.86861 6.88466 6.91575 7.18058 7.45916 7.48150 7.50763 7.79631 7.85979 8.27528 8.45077 9.28826 9.92984 10.42612 11.37214 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.001846 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.205269 B =15166.995356 C =15681.292608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.311 3.689 4 C -0.186 4.186 5 C -0.036 4.036 6 C -0.167 4.167 7 C -0.056 4.056 8 C -0.134 4.134 9 C 0.510 3.490 10 O -0.538 6.538 11 N -0.614 5.614 12 C 0.077 3.923 13 C 0.115 3.885 14 C -0.149 4.149 15 C 0.156 3.844 16 N -0.603 5.603 17 C 0.165 3.835 18 C -0.250 4.250 19 H 0.068 0.932 20 C -0.002 4.002 21 N -0.909 5.909 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.142 3.858 27 N -0.539 5.539 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.026 0.974 47 H 0.043 0.957 48 H -0.004 1.004 49 H 0.251 0.749 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.930 -13.771 3.216 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.133 3.867 4 C -0.207 4.207 5 C -0.062 4.062 6 C -0.170 4.170 7 C -0.095 4.095 8 C -0.174 4.174 9 C 0.298 3.702 10 O -0.415 6.415 11 N -0.348 5.348 12 C -0.066 4.066 13 C -0.008 4.008 14 C -0.190 4.190 15 C 0.028 3.972 16 N -0.326 5.326 17 C 0.020 3.980 18 C -0.380 4.380 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.014 4.014 27 N -0.262 5.262 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.015 0.985 49 H 0.061 0.939 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.432 -13.887 3.787 27.500 hybrid contribution 1.344 -0.064 -1.027 1.693 sum -22.087 -13.951 2.761 26.270 Atomic orbital electron populations 1.22846 0.77251 1.02886 1.02459 1.86234 1.22913 1.24669 1.87934 1.19862 0.89471 0.84690 0.92716 1.21090 0.91982 0.99645 1.07968 1.21423 1.00846 0.90687 0.93220 1.20788 0.94717 0.96535 1.04929 1.20201 1.02231 0.91344 0.95702 1.21698 1.02209 0.94640 0.98829 1.20594 0.78541 0.87580 0.83521 1.90712 1.53307 1.66675 1.30847 1.47972 1.61602 1.19207 1.05971 1.21798 1.00899 0.97818 0.86107 1.21645 0.94508 0.82292 1.02317 1.22598 0.92002 1.02093 1.02343 1.20732 0.84994 0.93037 0.98461 1.43982 0.99735 1.85535 1.03328 1.20775 0.94179 0.98760 0.84260 1.19259 0.98899 1.31969 0.87871 0.91410 1.25041 0.99333 0.98119 0.97466 1.70091 1.18404 1.36987 1.29962 0.86196 0.80571 0.77246 0.82613 1.20370 1.21664 1.21834 1.22329 0.92277 0.93543 0.93202 1.67320 1.40917 0.98803 1.19195 0.92324 0.92315 0.88687 0.84068 0.83832 0.89852 0.89725 0.88853 0.89052 0.92775 0.90548 0.91265 0.91068 0.90343 0.92422 0.92078 0.94006 0.94464 0.95526 0.93790 0.98507 0.93893 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.32 16 2 O -0.31 -3.00 10.48 -18.73 -0.20 -3.20 16 3 C 0.31 3.18 7.49 -17.12 -0.13 3.05 16 4 C -0.19 -1.65 10.04 -39.28 -0.39 -2.04 16 5 C -0.04 -0.30 9.85 -39.31 -0.39 -0.69 16 6 C -0.17 -1.44 5.15 -104.47 -0.54 -1.98 16 7 C -0.06 -0.52 4.66 -27.88 -0.13 -0.65 16 8 C -0.13 -1.24 4.23 -27.88 -0.12 -1.36 16 9 C 0.51 6.94 7.67 -10.99 -0.08 6.86 16 10 O -0.54 -9.46 15.56 5.55 0.09 -9.37 16 11 N -0.61 -8.02 2.87 -181.57 -0.52 -8.54 16 12 C 0.08 0.72 10.24 59.85 0.61 1.33 16 13 C 0.11 1.71 5.41 -4.04 -0.02 1.69 16 14 C -0.15 -2.85 5.86 -26.73 -0.16 -3.00 16 15 C 0.16 3.26 5.71 -4.04 -0.02 3.23 16 16 N -0.60 -15.65 2.93 -181.12 -0.53 -16.18 16 17 C 0.16 4.28 9.01 59.85 0.54 4.82 16 18 C -0.25 -6.96 9.67 -15.06 -0.15 -7.11 16 19 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 20 C 0.00 -0.05 5.13 -17.43 -0.09 -0.14 16 21 N -0.91 -27.03 10.59 55.49 0.59 -26.44 16 22 Si 0.90 22.00 29.57 -169.99 -5.03 16.97 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.14 1.25 10.85 -17.56 -0.19 1.06 16 27 N -0.54 -5.52 9.22 -13.33 -0.12 -5.64 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.08 0.78 8.05 -51.93 -0.42 0.37 16 34 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 35 H 0.09 0.78 7.40 -51.93 -0.38 0.40 16 36 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 39 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 40 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.08 1.24 7.42 -51.93 -0.39 0.85 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.04 0.82 8.03 -51.93 -0.42 0.41 16 45 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 46 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 47 H 0.04 1.21 7.19 -51.93 -0.37 0.83 16 48 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 412.95 15.07 6.22 6.22 Total: -1.00 -34.73 412.95 -8.25 -42.97 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.54 Total: -3.18 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.21 Total: 6.39 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.59 Total: -56.81 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.11 Total: -12.57 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.73 -8.25 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755040543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.013 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds