Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00076 * 2 1 4 4 H 1.07996 * 120.00363 * 324.30478 * 3 2 1 5 5 C 1.38816 * 120.00063 * 144.30327 * 3 2 1 6 6 N 1.31623 * 119.99864 * 157.72418 * 5 3 2 7 7 Si 1.86801 * 119.99931 * 337.72834 * 5 3 2 8 8 H 1.48505 * 109.47133 * 90.79184 * 7 5 3 9 9 H 1.48497 * 109.46791 * 210.79049 * 7 5 3 10 10 H 1.48496 * 109.47206 * 330.79289 * 7 5 3 11 11 C 1.46498 * 119.99719 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47177 * 90.00274 * 11 2 1 13 13 C 1.53008 * 109.47030 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46816 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99701 * 269.99908 * 14 13 12 16 16 C 1.34773 * 120.00160 * 89.99999 * 14 13 12 17 17 O 1.21498 * 119.99458 * 4.02939 * 16 14 13 18 18 C 1.48330 * 120.00005 * 184.02923 * 16 14 13 19 19 N 1.31333 * 127.13463 * 354.11502 * 18 16 14 20 20 O 1.21236 * 111.49059 * 179.97438 * 19 18 16 21 21 C 1.33638 * 111.63826 * 359.61959 * 20 19 18 22 22 C 1.34988 * 106.59956 * 0.67791 * 21 20 19 23 23 C 1.50083 * 126.60076 * 179.22447 * 22 21 20 24 24 C 1.53342 * 109.03273 * 27.93939 * 23 22 21 25 25 C 1.52544 * 109.59968 * 271.60598 * 24 23 22 26 26 C 1.52627 * 110.98798 * 61.28836 * 25 24 23 27 27 C 1.50616 * 127.99892 * 181.61557 * 21 20 19 28 28 H 1.09005 * 109.47087 * 265.08709 * 1 2 3 29 29 H 1.09003 * 109.47465 * 25.08342 * 1 2 3 30 30 H 1.08995 * 109.47318 * 145.09171 * 1 2 3 31 31 H 0.96999 * 119.99778 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.47530 * 329.99745 * 11 2 1 33 33 H 1.09005 * 109.46909 * 209.99902 * 11 2 1 34 34 H 1.08993 * 109.47259 * 59.99579 * 12 11 2 35 35 H 1.09000 * 109.46945 * 299.99163 * 12 11 2 36 36 H 1.09002 * 109.47072 * 59.99795 * 13 12 11 37 37 H 1.08988 * 109.47025 * 299.99666 * 13 12 11 38 38 H 1.09002 * 109.47172 * 264.08744 * 15 14 13 39 39 H 1.08991 * 109.47459 * 24.09094 * 15 14 13 40 40 H 1.09002 * 109.46847 * 144.09304 * 15 14 13 41 41 H 1.08994 * 109.55732 * 147.83016 * 23 22 21 42 42 H 1.09002 * 109.55965 * 268.04721 * 23 22 21 43 43 H 1.08999 * 109.45868 * 31.54063 * 24 23 22 44 44 H 1.09001 * 109.45452 * 151.49702 * 24 23 22 45 45 H 1.08994 * 109.10933 * 300.92567 * 25 24 23 46 46 H 1.09003 * 109.19869 * 181.70442 * 25 24 23 47 47 H 1.09009 * 109.39893 * 273.57982 * 26 25 24 48 48 H 1.08997 * 109.33862 * 153.79035 * 26 25 24 49 49 H 1.09001 * 109.53053 * 345.80290 * 27 21 20 50 50 H 1.09005 * 109.53668 * 105.95783 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7619 2.0333 -0.5457 5 6 3.3422 1.2988 0.7015 6 7 4.2117 2.2316 0.3753 7 14 3.7130 0.1269 2.1081 8 1 4.4397 -1.0584 1.5864 9 1 4.5534 0.8174 3.1191 10 1 2.4406 -0.3098 2.7370 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2180 -3.0346 -1.4438 14 7 3.4616 -3.4571 -2.8252 15 6 2.4849 -4.3032 -3.5155 16 6 4.5843 -3.0675 -3.4611 17 8 5.4284 -2.4275 -2.8660 18 6 4.7892 -3.4201 -4.8872 19 7 4.0285 -4.1903 -5.6307 20 8 4.4613 -4.2857 -6.7592 21 6 5.5807 -3.5736 -6.9195 22 6 5.8450 -2.9972 -5.7278 23 6 7.0119 -2.1114 -5.4014 24 6 7.4655 -1.3915 -6.6771 25 6 8.4890 -2.2505 -7.4130 26 6 7.8825 -3.5880 -7.8286 27 6 6.4006 -3.4042 -8.1715 28 1 -0.3633 -0.0880 1.0239 29 1 -0.3634 0.9307 -0.4357 30 1 -0.3634 -0.8427 -0.5881 31 1 5.0452 2.3102 0.8653 32 1 1.6083 -2.0287 0.5130 33 1 3.1499 -1.1386 0.5133 34 1 3.0415 -0.9499 -1.9567 35 1 1.5000 -1.8399 -1.9571 36 1 2.6292 -3.7946 -0.9302 37 1 4.1703 -2.9040 -0.9301 38 1 2.7861 -5.3475 -3.4328 39 1 1.5035 -4.1710 -3.0601 40 1 2.4385 -4.0207 -4.5672 41 1 6.7140 -1.3763 -4.6539 42 1 7.8313 -2.7159 -5.0126 43 1 6.6046 -1.2216 -7.3238 44 1 7.9158 -0.4346 -6.4134 45 1 9.3404 -2.4316 -6.7570 46 1 8.8294 -1.7198 -8.3022 47 1 7.9788 -4.2997 -7.0085 48 1 8.4118 -3.9685 -8.7022 49 1 6.1013 -4.1509 -8.9069 50 1 6.2408 -2.4061 -8.5797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755045957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = 55.397078 kcal Electronic energy + Delta-G solvation = -29962.101281 eV Core-core repulsion = 25993.882839 eV Total energy + Delta-G solvation = -3968.218442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.22377 -39.71969 -38.43162 -36.48584 -35.42575 -34.27051 -32.21310 -32.03202 -31.46999 -30.81098 -27.10263 -26.77785 -26.23875 -25.72851 -25.10144 -23.69927 -21.77534 -21.13404 -20.61359 -20.02400 -19.25179 -18.00753 -17.38467 -16.88983 -16.67904 -15.79427 -15.70392 -15.45999 -15.21013 -15.04174 -14.31867 -13.99484 -13.70339 -13.63506 -13.49112 -13.43981 -13.21257 -13.02129 -12.83779 -12.64851 -12.49393 -12.23299 -12.01026 -11.87444 -11.59031 -11.47466 -11.33640 -11.19365 -11.05149 -10.85506 -10.78555 -10.69465 -10.41003 -10.39179 -10.32858 -9.98627 -9.68643 -9.39210 -9.25719 -8.58960 -8.42029 -6.79299 -5.92328 -3.32132 1.00901 1.56575 2.69058 2.91077 3.20816 3.36245 3.50740 3.55956 3.82934 4.22222 4.42354 4.50515 4.58674 4.60329 4.67606 4.77271 4.96056 5.03411 5.06441 5.08155 5.21728 5.33276 5.38479 5.42347 5.44480 5.47704 5.49530 5.59195 5.64270 5.75225 5.79325 5.84200 5.87589 5.92589 5.95018 6.05241 6.06152 6.14982 6.24446 6.30007 6.38001 6.54171 6.69271 6.72418 6.83603 7.09045 7.33991 7.84897 8.10702 8.16219 8.42357 9.04101 9.77975 10.17420 11.23600 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.003065 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.203572 B = 9132.371362 C =10194.945672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.271 4.271 4 H 0.078 0.922 5 C 0.035 3.965 6 N -0.899 5.899 7 Si 0.880 3.120 8 H -0.281 1.281 9 H -0.302 1.302 10 H -0.272 1.272 11 C 0.137 3.863 12 C -0.146 4.146 13 C 0.114 3.886 14 N -0.599 5.599 15 C 0.073 3.927 16 C 0.590 3.410 17 O -0.509 6.509 18 C -0.011 4.011 19 N -0.334 5.334 20 O 0.114 5.886 21 C -0.038 4.038 22 C -0.143 4.143 23 C -0.049 4.049 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.116 4.116 27 C -0.037 4.037 28 H 0.006 0.994 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -16.112 -18.815 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.337 5.337 3 C -0.400 4.400 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.540 5.540 7 Si 0.711 3.289 8 H -0.209 1.209 9 H -0.230 1.230 10 H -0.197 1.197 11 C 0.011 3.989 12 C -0.187 4.187 13 C -0.008 4.008 14 N -0.332 5.332 15 C -0.070 4.070 16 C 0.375 3.625 17 O -0.382 6.382 18 C -0.169 4.169 19 N -0.039 5.039 20 O 0.043 5.957 21 C -0.101 4.101 22 C -0.148 4.148 23 C -0.087 4.087 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.075 4.075 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.138 -16.322 -18.133 24.745 hybrid contribution 0.667 -0.272 0.873 1.132 sum 4.806 -16.593 -17.260 24.420 Atomic orbital electron populations 1.21050 0.84582 0.98988 0.97286 1.44042 1.00785 1.02048 1.86787 1.18789 1.04619 0.90211 1.26338 0.90440 1.25408 0.96744 0.96520 0.97861 1.69866 1.08147 1.35703 1.40328 0.86965 0.77780 0.80342 0.83824 1.20938 1.23013 1.19714 1.21152 0.96656 0.87725 0.93396 1.22484 0.99405 0.95532 1.01280 1.21713 1.01878 0.97104 0.80113 1.47770 1.20159 1.50365 1.14928 1.22085 0.92147 0.93952 0.98823 1.16957 0.82362 0.79972 0.83185 1.90841 1.43011 1.38847 1.65505 1.23245 0.95307 1.00954 0.97394 1.74524 1.19694 1.18337 0.91313 1.84746 1.32906 1.53129 1.24913 1.24072 0.90195 0.97032 0.98812 1.20688 0.99394 1.03005 0.91689 1.20030 0.93065 0.97155 0.98433 1.21730 0.99259 0.98979 0.96325 1.21542 0.98571 0.95444 1.00493 1.21585 0.93157 0.98504 1.02165 1.20265 0.92648 1.04127 0.90468 0.97592 0.93692 0.95634 0.92714 0.94385 0.92437 0.90799 0.92832 0.90614 0.89607 0.92642 0.90745 0.89459 0.88746 0.89959 0.91283 0.90752 0.91427 0.91635 0.91304 0.90480 0.89370 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.62 10.70 59.85 0.64 3.26 16 2 N -0.61 -15.35 2.52 -181.12 -0.46 -15.80 16 3 C -0.27 -7.94 9.91 -15.06 -0.15 -8.09 16 4 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 5 C 0.04 1.06 5.32 -17.43 -0.09 0.97 16 6 N -0.90 -28.52 13.97 55.49 0.78 -27.75 16 7 Si 0.88 23.19 25.14 -169.99 -4.27 18.91 16 8 H -0.28 -7.17 6.45 56.52 0.36 -6.80 16 9 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 10 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.14 3.08 4.53 -4.04 -0.02 3.06 16 12 C -0.15 -2.93 5.86 -26.73 -0.16 -3.09 16 13 C 0.11 1.95 5.41 -4.04 -0.02 1.93 16 14 N -0.60 -9.67 2.87 -182.51 -0.52 -10.19 16 15 C 0.07 0.92 9.69 59.85 0.58 1.49 16 16 C 0.59 10.54 7.70 -12.11 -0.09 10.44 16 17 O -0.51 -10.72 15.13 5.37 0.08 -10.63 16 18 C -0.01 -0.16 6.87 -82.71 -0.57 -0.73 16 19 N -0.33 -4.50 8.74 33.31 0.29 -4.21 16 20 O 0.11 1.32 11.18 18.13 0.20 1.52 16 21 C -0.04 -0.38 6.64 -35.50 -0.24 -0.62 16 22 C -0.14 -1.84 5.73 -104.86 -0.60 -2.44 16 23 C -0.05 -0.59 5.33 -28.00 -0.15 -0.74 16 24 C -0.13 -1.09 5.55 -26.79 -0.15 -1.24 16 25 C -0.12 -0.79 5.63 -27.16 -0.15 -0.94 16 26 C -0.12 -0.68 5.63 -26.81 -0.15 -0.83 16 27 C -0.04 -0.23 5.55 -27.81 -0.15 -0.39 16 28 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 30 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.33 16 33 H 0.06 1.43 2.88 -51.93 -0.15 1.28 16 34 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 37 H 0.09 1.64 7.37 -51.94 -0.38 1.26 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 40 H 0.09 1.13 5.34 -51.93 -0.28 0.85 16 41 H 0.09 1.41 7.19 -51.93 -0.37 1.03 16 42 H 0.08 0.93 7.84 -51.93 -0.41 0.53 16 43 H 0.07 0.59 5.69 -51.93 -0.30 0.29 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.48 7.79 -51.92 -0.40 0.08 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.10 0.55 6.38 -51.93 -0.33 0.22 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -34.79 386.61 -7.66 -42.45 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.11 Total: -2.16 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.47 Total: 2.04 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.09 Total: -57.95 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.28 Total: -9.11 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.27 Total: 18.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.79 -7.66 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755045957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.846 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds