Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00076 * 2 1 4 4 H 1.07996 * 120.00363 * 324.30478 * 3 2 1 5 5 C 1.38816 * 120.00063 * 144.30327 * 3 2 1 6 6 N 1.31623 * 119.99864 * 157.72418 * 5 3 2 7 7 Si 1.86801 * 119.99931 * 337.72834 * 5 3 2 8 8 H 1.48505 * 109.47133 * 90.79184 * 7 5 3 9 9 H 1.48497 * 109.46791 * 210.79049 * 7 5 3 10 10 H 1.48496 * 109.47206 * 330.79289 * 7 5 3 11 11 C 1.46498 * 119.99719 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47177 * 90.00274 * 11 2 1 13 13 C 1.53008 * 109.47030 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46816 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99701 * 269.99908 * 14 13 12 16 16 C 1.34773 * 120.00160 * 89.99999 * 14 13 12 17 17 O 1.21498 * 119.99458 * 4.02939 * 16 14 13 18 18 C 1.48330 * 120.00005 * 184.02923 * 16 14 13 19 19 N 1.31333 * 127.13463 * 354.11502 * 18 16 14 20 20 O 1.21236 * 111.49059 * 179.97438 * 19 18 16 21 21 C 1.33638 * 111.63826 * 359.61959 * 20 19 18 22 22 C 1.34988 * 106.59956 * 0.67791 * 21 20 19 23 23 C 1.50083 * 126.60076 * 179.22447 * 22 21 20 24 24 C 1.53342 * 109.03273 * 27.93939 * 23 22 21 25 25 C 1.52544 * 109.59968 * 271.60598 * 24 23 22 26 26 C 1.52627 * 110.98798 * 61.28836 * 25 24 23 27 27 C 1.50616 * 127.99892 * 181.61557 * 21 20 19 28 28 H 1.09005 * 109.47087 * 265.08709 * 1 2 3 29 29 H 1.09003 * 109.47465 * 25.08342 * 1 2 3 30 30 H 1.08995 * 109.47318 * 145.09171 * 1 2 3 31 31 H 0.96999 * 119.99778 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.47530 * 329.99745 * 11 2 1 33 33 H 1.09005 * 109.46909 * 209.99902 * 11 2 1 34 34 H 1.08993 * 109.47259 * 59.99579 * 12 11 2 35 35 H 1.09000 * 109.46945 * 299.99163 * 12 11 2 36 36 H 1.09002 * 109.47072 * 59.99795 * 13 12 11 37 37 H 1.08988 * 109.47025 * 299.99666 * 13 12 11 38 38 H 1.09002 * 109.47172 * 264.08744 * 15 14 13 39 39 H 1.08991 * 109.47459 * 24.09094 * 15 14 13 40 40 H 1.09002 * 109.46847 * 144.09304 * 15 14 13 41 41 H 1.08994 * 109.55732 * 147.83016 * 23 22 21 42 42 H 1.09002 * 109.55965 * 268.04721 * 23 22 21 43 43 H 1.08999 * 109.45868 * 31.54063 * 24 23 22 44 44 H 1.09001 * 109.45452 * 151.49702 * 24 23 22 45 45 H 1.08994 * 109.10933 * 300.92567 * 25 24 23 46 46 H 1.09003 * 109.19869 * 181.70442 * 25 24 23 47 47 H 1.09009 * 109.39893 * 273.57982 * 26 25 24 48 48 H 1.08997 * 109.33862 * 153.79035 * 26 25 24 49 49 H 1.09001 * 109.53053 * 345.80290 * 27 21 20 50 50 H 1.09005 * 109.53668 * 105.95783 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7619 2.0333 -0.5457 5 6 3.3422 1.2988 0.7015 6 7 4.2117 2.2316 0.3753 7 14 3.7130 0.1269 2.1081 8 1 4.4397 -1.0584 1.5864 9 1 4.5534 0.8174 3.1191 10 1 2.4406 -0.3098 2.7370 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2180 -3.0346 -1.4438 14 7 3.4616 -3.4571 -2.8252 15 6 2.4849 -4.3032 -3.5155 16 6 4.5843 -3.0675 -3.4611 17 8 5.4284 -2.4275 -2.8660 18 6 4.7892 -3.4201 -4.8872 19 7 4.0285 -4.1903 -5.6307 20 8 4.4613 -4.2857 -6.7592 21 6 5.5807 -3.5736 -6.9195 22 6 5.8450 -2.9972 -5.7278 23 6 7.0119 -2.1114 -5.4014 24 6 7.4655 -1.3915 -6.6771 25 6 8.4890 -2.2505 -7.4130 26 6 7.8825 -3.5880 -7.8286 27 6 6.4006 -3.4042 -8.1715 28 1 -0.3633 -0.0880 1.0239 29 1 -0.3634 0.9307 -0.4357 30 1 -0.3634 -0.8427 -0.5881 31 1 5.0452 2.3102 0.8653 32 1 1.6083 -2.0287 0.5130 33 1 3.1499 -1.1386 0.5133 34 1 3.0415 -0.9499 -1.9567 35 1 1.5000 -1.8399 -1.9571 36 1 2.6292 -3.7946 -0.9302 37 1 4.1703 -2.9040 -0.9301 38 1 2.7861 -5.3475 -3.4328 39 1 1.5035 -4.1710 -3.0601 40 1 2.4385 -4.0207 -4.5672 41 1 6.7140 -1.3763 -4.6539 42 1 7.8313 -2.7159 -5.0126 43 1 6.6046 -1.2216 -7.3238 44 1 7.9158 -0.4346 -6.4134 45 1 9.3404 -2.4316 -6.7570 46 1 8.8294 -1.7198 -8.3022 47 1 7.9788 -4.2997 -7.0085 48 1 8.4118 -3.9685 -8.7022 49 1 6.1013 -4.1509 -8.9069 50 1 6.2408 -2.4061 -8.5797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755045957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = 33.618257 kcal Electronic energy + Delta-G solvation = -29963.045681 eV Core-core repulsion = 25993.882839 eV Total energy + Delta-G solvation = -3969.162843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.24003 -41.07227 -39.14419 -38.25113 -36.93617 -35.30711 -33.99496 -33.05324 -32.84386 -32.04144 -28.46635 -28.05686 -27.73299 -26.99849 -25.82420 -25.11254 -23.33803 -22.51411 -22.08026 -20.69858 -20.36344 -19.01883 -18.83034 -18.40624 -17.98091 -17.45172 -17.16029 -16.56312 -16.42478 -15.97242 -15.78719 -15.40646 -15.10551 -15.00805 -14.74774 -14.44402 -14.37767 -14.29609 -14.17641 -14.00159 -13.69209 -13.45792 -13.41326 -13.10611 -12.89428 -12.79516 -12.61540 -12.43960 -12.34333 -12.22788 -12.15746 -11.82768 -11.78883 -11.62604 -11.42834 -11.38812 -11.35005 -11.19701 -10.63259 -10.15202 -9.90683 -8.84292 -8.24639 -5.61261 -0.06028 0.57373 1.26083 1.34750 1.47121 1.58130 1.91627 1.93871 2.38164 2.70019 2.98870 3.34206 3.40626 3.58836 3.80938 3.88212 3.90906 4.00907 4.09921 4.12847 4.18786 4.23293 4.32573 4.34913 4.39850 4.44507 4.55994 4.59579 4.67718 4.71320 4.71839 4.76634 4.83177 4.88206 4.91838 4.97894 5.03161 5.08240 5.11845 5.14677 5.24143 5.27656 5.32159 5.40226 5.41573 5.49688 5.88418 6.05316 6.09352 6.73419 6.93811 6.96102 7.59403 7.98847 8.95379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.003065 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.203572 B = 9132.371362 C =10194.945672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.628 5.628 3 C -0.264 4.264 4 H 0.038 0.962 5 C -0.026 4.026 6 N -0.950 5.950 7 Si 0.948 3.052 8 H -0.272 1.272 9 H -0.307 1.307 10 H -0.253 1.253 11 C 0.131 3.869 12 C -0.129 4.129 13 C 0.120 3.880 14 N -0.598 5.598 15 C 0.072 3.928 16 C 0.580 3.420 17 O -0.558 6.558 18 C -0.041 4.041 19 N -0.333 5.333 20 O 0.129 5.871 21 C -0.011 4.011 22 C -0.169 4.169 23 C -0.046 4.046 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.038 4.038 28 H 0.020 0.980 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -19.548 -20.604 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.353 5.353 3 C -0.394 4.394 4 H 0.056 0.944 5 C -0.222 4.222 6 N -0.594 5.594 7 Si 0.777 3.223 8 H -0.200 1.200 9 H -0.236 1.236 10 H -0.177 1.177 11 C 0.005 3.995 12 C -0.170 4.170 13 C -0.003 4.003 14 N -0.330 5.330 15 C -0.070 4.070 16 C 0.366 3.634 17 O -0.435 6.435 18 C -0.198 4.198 19 N -0.036 5.036 20 O 0.055 5.945 21 C -0.075 4.075 22 C -0.174 4.174 23 C -0.084 4.084 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.151 4.151 27 C -0.075 4.075 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.125 0.875 49 H 0.137 0.863 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.921 -19.813 -19.915 28.243 hybrid contribution 0.937 0.807 1.277 1.777 sum 3.858 -19.006 -18.638 26.898 Atomic orbital electron populations 1.21193 0.81824 1.00300 0.98723 1.44221 1.02622 1.01408 1.87068 1.18697 1.04670 0.91074 1.24936 0.94416 1.26102 0.96796 0.98877 1.00420 1.70009 1.08907 1.38667 1.41862 0.85854 0.78229 0.78300 0.79937 1.19989 1.23574 1.17703 1.21278 0.95915 0.87592 0.94668 1.22238 0.99739 0.95528 0.99507 1.21603 1.00786 0.96848 0.81046 1.47889 1.20289 1.50131 1.14713 1.22290 0.92219 0.94047 0.98428 1.17441 0.82322 0.79298 0.84302 1.90805 1.44788 1.41090 1.66867 1.23060 0.97167 1.02936 0.96589 1.74496 1.19503 1.17902 0.91680 1.84722 1.33143 1.52653 1.23979 1.24740 0.88962 0.94549 0.99239 1.20870 0.99576 1.04323 0.92653 1.19953 0.92959 0.96305 0.99160 1.21732 1.00221 0.98989 0.94937 1.21531 0.97542 0.95702 1.00896 1.21605 0.92996 0.97611 1.02891 1.20592 0.92012 1.06025 0.88873 0.96137 0.94413 0.91966 0.92933 0.89986 0.95106 0.96346 0.90764 0.86027 0.92323 0.90932 0.88398 0.89891 0.93077 0.90196 0.90721 0.91164 0.91758 0.89407 0.92786 0.87464 0.86318 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.85 10.70 127.77 1.37 6.21 16 2 N -0.63 -31.03 2.52 -726.94 -1.83 -32.86 16 3 C -0.26 -15.97 9.91 84.04 0.83 -15.14 16 4 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 5 C -0.03 -1.60 5.32 84.86 0.45 -1.15 16 6 N -0.95 -63.39 13.97 21.65 0.30 -63.09 16 7 Si 0.95 49.01 25.14 68.60 1.72 50.74 16 8 H -0.27 -13.57 6.45 99.48 0.64 -12.92 16 9 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 10 H -0.25 -12.18 7.11 99.48 0.71 -11.48 16 11 C 0.13 5.66 4.53 86.38 0.39 6.05 16 12 C -0.13 -5.14 5.86 30.60 0.18 -4.96 16 13 C 0.12 3.98 5.41 86.38 0.47 4.45 16 14 N -0.60 -19.14 2.87 -849.63 -2.44 -21.58 16 15 C 0.07 1.64 9.69 127.77 1.24 2.87 16 16 C 0.58 21.76 7.70 86.93 0.67 22.43 16 17 O -0.56 -25.62 15.13 -3.71 -0.06 -25.68 16 18 C -0.04 -1.28 6.87 42.69 0.29 -0.99 16 19 N -0.33 -8.70 8.74 -49.03 -0.43 -9.13 16 20 O 0.13 2.75 11.18 74.96 0.84 3.58 16 21 C -0.01 -0.21 6.64 24.91 0.17 -0.04 16 22 C -0.17 -4.45 5.73 -20.02 -0.11 -4.56 16 23 C -0.05 -1.19 5.33 29.77 0.16 -1.03 16 24 C -0.12 -2.10 5.55 30.56 0.17 -1.93 16 25 C -0.12 -1.29 5.63 30.32 0.17 -1.12 16 26 C -0.11 -0.97 5.63 30.54 0.17 -0.80 16 27 C -0.04 -0.34 5.55 29.89 0.17 -0.17 16 28 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.04 1.50 8.00 -2.39 -0.02 1.48 16 30 H 0.06 1.98 8.11 -2.39 -0.02 1.96 16 31 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 32 H 0.08 2.85 8.07 -2.38 -0.02 2.83 16 33 H 0.03 1.52 2.88 -2.38 -0.01 1.51 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 36 H 0.12 2.94 8.07 -2.39 -0.02 2.92 16 37 H 0.06 2.29 7.37 -2.39 -0.02 2.27 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 40 H 0.08 2.01 5.34 -2.39 -0.01 2.00 16 41 H 0.05 1.74 7.19 -2.39 -0.02 1.72 16 42 H 0.08 2.00 7.84 -2.39 -0.02 1.98 16 43 H 0.07 1.19 5.69 -2.39 -0.01 1.18 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 46 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.05 0.65 7.79 -2.38 -0.02 0.63 16 48 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.12 0.81 6.38 -2.38 -0.02 0.80 16 Total: -1.00 -82.97 386.61 5.76 -77.22 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.87 Total: 10.67 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.78 Total: 10.13 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -4.40 Total: -126.66 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.78 Total: -22.09 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.72 Total: 50.74 kcal Total: -82.97 5.76 -77.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755045957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.835 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds