Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 111.00117 * 2 1 4 4 C 1.50702 * 109.47165 * 66.04771 * 3 2 1 5 5 O 1.21291 * 119.99876 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.37097 * 120.00125 * 179.97438 * 6 4 3 8 8 H 1.07996 * 120.00089 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99802 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99878 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00261 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47131 * 90.00117 * 11 9 7 13 13 H 1.48501 * 109.47443 * 210.00293 * 11 9 7 14 14 H 1.48508 * 109.47437 * 330.00139 * 11 9 7 15 15 C 1.46903 * 110.99662 * 236.04549 * 2 1 3 16 16 C 1.53040 * 109.46093 * 298.95427 * 15 2 1 17 17 C 1.53194 * 109.31283 * 181.38629 * 16 15 2 18 18 N 1.46922 * 108.89256 * 305.29867 * 17 16 15 19 19 C 1.34782 * 120.62875 * 233.68029 * 18 17 16 20 20 O 1.21613 * 119.99626 * 353.88554 * 19 18 17 21 21 C 1.47100 * 120.00157 * 173.88733 * 19 18 17 22 22 C 1.32606 * 124.62276 * 203.11940 * 21 19 18 23 23 C 1.51113 * 110.76113 * 180.02562 * 22 21 19 24 24 C 1.54576 * 104.83695 * 16.59699 * 23 22 21 25 25 C 1.51114 * 124.61680 * 22.82342 * 21 19 18 26 26 C 1.47199 * 118.56020 * 53.53843 * 18 17 16 27 27 C 1.53039 * 109.46039 * 59.02451 * 15 2 1 28 28 H 1.08996 * 109.47212 * 183.95325 * 1 2 3 29 29 H 1.08997 * 109.46895 * 303.95431 * 1 2 3 30 30 H 1.09001 * 109.46864 * 63.95237 * 1 2 3 31 31 H 1.09006 * 109.47027 * 186.04180 * 3 2 1 32 32 H 1.08996 * 109.47209 * 306.04370 * 3 2 1 33 33 H 0.97005 * 120.00001 * 0.02562 * 6 4 3 34 34 H 0.97001 * 119.99922 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.44365 * 178.99396 * 15 2 1 36 36 H 1.08998 * 109.49959 * 61.43790 * 16 15 2 37 37 H 1.09001 * 109.52359 * 301.35329 * 16 15 2 38 38 H 1.09002 * 109.58127 * 65.15471 * 17 16 15 39 39 H 1.08998 * 109.58711 * 185.43424 * 17 16 15 40 40 H 1.08006 * 124.61811 * 0.02562 * 22 21 19 41 41 H 1.09003 * 110.36506 * 135.43913 * 23 22 21 42 42 H 1.09000 * 110.36488 * 257.75868 * 23 22 21 43 43 H 1.09002 * 110.98323 * 93.07865 * 24 23 22 44 44 H 1.09001 * 110.98076 * 216.86913 * 24 23 22 45 45 H 1.09005 * 110.36342 * 282.23743 * 25 21 19 46 46 H 1.08998 * 110.36737 * 44.56060 * 25 21 19 47 47 H 1.08999 * 109.53595 * 186.67484 * 26 18 17 48 48 H 1.08997 * 109.68013 * 66.36741 * 26 18 17 49 49 H 1.09000 * 109.49590 * 298.56512 * 27 15 2 50 50 H 1.09004 * 109.49403 * 58.63044 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0190 3.3198 1.5238 7 6 1.6924 3.9347 2.7048 8 1 1.1295 3.3991 3.4548 9 6 2.0858 5.2470 2.9368 10 7 1.7732 5.8362 4.0691 11 14 3.0602 6.1731 1.6399 12 1 2.1245 6.8772 0.7267 13 1 3.9467 7.1645 2.3008 14 1 3.8842 5.2141 0.8610 15 6 1.9954 -0.7660 -1.1376 16 6 1.5259 -2.2190 -1.0349 17 6 2.1050 -3.0224 -2.2037 18 7 1.7392 -2.3606 -3.4634 19 6 1.1177 -3.0456 -4.4437 20 8 0.9539 -4.2459 -4.3370 21 6 0.6375 -2.3414 -5.6426 22 6 -0.3309 -2.7786 -6.4360 23 6 -0.5697 -1.8119 -7.5726 24 6 0.6883 -0.9140 -7.5994 25 6 1.1763 -1.0180 -6.1343 26 6 2.0634 -0.9343 -3.6289 27 6 1.4848 -0.1543 -2.4442 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3443 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 2.5244 3.8010 0.8500 34 1 2.0475 6.7524 4.2309 35 1 3.0849 -0.7346 -1.1232 36 1 0.4372 -2.2532 -1.0740 37 1 1.8698 -2.6472 -0.0933 38 1 3.1906 -3.0652 -2.1152 39 1 1.6971 -4.0331 -2.1900 40 1 -0.8748 -3.7002 -6.2897 41 1 -0.6710 -2.3512 -8.5144 42 1 -1.4595 -1.2125 -7.3801 43 1 1.4329 -1.3059 -8.2923 44 1 0.4283 0.1147 -7.8491 45 1 0.7736 -0.1993 -5.5378 46 1 2.2657 -1.0148 -6.0980 47 1 1.6262 -0.5665 -4.5572 48 1 3.1453 -0.8048 -3.6583 49 1 0.3964 -0.2079 -2.4700 50 1 1.7993 0.8876 -2.5054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755528233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = -14.655665 kcal Electronic energy + Delta-G solvation = -29563.362982 eV Core-core repulsion = 25592.106825 eV Total energy + Delta-G solvation = -3971.256157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92354 -39.31400 -38.28385 -37.71973 -35.75576 -33.93849 -32.16289 -31.67365 -31.18582 -29.75940 -28.90697 -28.04019 -26.17410 -24.76905 -23.69252 -23.16981 -21.58096 -21.22049 -19.63114 -19.33163 -18.64493 -18.23014 -17.10112 -16.59452 -16.26816 -16.15870 -15.33281 -15.22428 -15.00915 -14.88358 -14.71669 -14.22470 -14.09760 -13.91382 -13.40225 -13.25772 -13.18473 -12.95051 -12.74662 -12.57528 -12.50266 -12.42634 -12.14563 -12.08021 -11.89695 -11.68453 -11.55768 -11.47037 -11.28462 -11.14820 -10.94415 -10.70787 -10.61362 -10.49664 -10.04281 -9.98506 -9.54447 -9.40620 -8.86106 -8.56609 -8.18817 -7.90026 -6.31841 -3.83189 1.07432 2.69644 2.93745 3.00753 3.04584 3.13410 3.73207 3.88656 3.95906 4.08246 4.09023 4.33156 4.48911 4.56223 4.65464 4.77520 4.79840 4.86797 4.94415 5.04240 5.08387 5.14263 5.18925 5.22799 5.23255 5.29689 5.39197 5.42686 5.46772 5.54488 5.59056 5.63131 5.64998 5.69317 5.74621 5.80562 5.85813 5.90491 5.95645 6.02715 6.11955 6.13740 6.33787 6.52375 7.14245 7.18498 7.31719 7.58105 7.92249 8.14184 8.59710 8.94841 9.41821 9.83246 10.81358 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002426 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.460055 B =11540.181343 C =12533.170845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.042 3.958 4 C 0.453 3.547 5 O -0.558 6.558 6 N -0.592 5.592 7 C -0.304 4.304 8 H 0.119 0.881 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.880 3.120 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.085 3.915 16 C -0.125 4.125 17 C 0.113 3.887 18 N -0.603 5.603 19 C 0.568 3.432 20 O -0.546 6.546 21 C -0.194 4.194 22 C -0.075 4.075 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.094 4.094 26 C 0.066 3.934 27 C -0.173 4.173 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -12.352 -25.710 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.089 4.089 4 C 0.238 3.762 5 O -0.440 6.440 6 N -0.232 5.232 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.024 4.024 16 C -0.163 4.163 17 C -0.010 4.010 18 N -0.335 5.335 19 C 0.358 3.642 20 O -0.425 6.425 21 C -0.197 4.197 22 C -0.095 4.095 23 C -0.145 4.145 24 C -0.164 4.164 25 C -0.131 4.131 26 C -0.056 4.056 27 C -0.213 4.213 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.036 0.964 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.202 0.798 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.154 0.846 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.141 0.859 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.101 -13.419 -24.449 27.890 hybrid contribution 0.623 1.448 -1.467 2.153 sum 0.725 -11.971 -25.917 28.557 Atomic orbital electron populations 1.22607 0.86887 1.02201 1.01377 1.61819 1.08803 1.12409 1.40168 1.21903 1.00698 0.89545 0.96789 1.19660 0.85084 0.82388 0.89020 1.90531 1.42575 1.64064 1.46827 1.42218 1.50973 1.12036 1.17949 1.19422 1.33626 0.96189 0.93996 0.86294 1.25040 0.97915 0.96530 0.96743 1.69623 1.45849 1.13537 1.23184 0.86674 0.80484 0.80526 0.81704 1.19702 1.20191 1.19492 1.21777 0.99657 0.93416 0.87584 1.21976 1.01560 0.94431 0.98360 1.21644 0.99883 0.97499 0.81987 1.48039 1.58410 1.11031 1.16037 1.18011 0.77236 0.86397 0.82579 1.90785 1.57715 1.14199 1.79764 1.21780 1.01933 0.98479 0.97458 1.24020 0.94392 0.97643 0.93441 1.21489 0.99090 0.96430 0.97444 1.22549 0.97275 1.00365 0.96203 1.21615 1.01328 0.94371 0.95740 1.22928 1.00943 0.79979 1.01735 1.22677 1.02195 1.00173 0.96232 0.91914 0.88688 0.96444 0.89394 0.93315 0.79782 0.91634 0.89944 0.91254 0.89438 0.91316 0.88889 0.84566 0.90120 0.89537 0.90647 0.90296 0.88904 0.90197 0.85946 0.91298 0.90909 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.46 60.07 0.51 0.77 16 2 N -0.51 -7.78 4.49 -236.28 -1.06 -8.84 16 3 C 0.04 0.68 4.89 -4.98 -0.02 0.65 16 4 C 0.45 10.07 7.48 -10.98 -0.08 9.98 16 5 O -0.56 -14.69 13.91 5.55 0.08 -14.61 16 6 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 10 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 11 Si 0.88 19.07 27.73 -169.99 -4.71 14.36 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 15 C 0.08 0.97 2.19 -67.67 -0.15 0.82 16 16 C -0.12 -1.36 5.11 -26.61 -0.14 -1.50 16 17 C 0.11 1.15 6.40 -3.71 -0.02 1.13 16 18 N -0.60 -6.13 2.98 -173.94 -0.52 -6.65 16 19 C 0.57 6.68 7.61 -12.66 -0.10 6.59 16 20 O -0.55 -8.32 16.32 5.27 0.09 -8.23 16 21 C -0.19 -1.72 5.85 -102.73 -0.60 -2.32 16 22 C -0.08 -0.59 10.50 -36.01 -0.38 -0.97 16 23 C -0.11 -0.55 6.80 -26.85 -0.18 -0.73 16 24 C -0.13 -0.59 7.17 -24.97 -0.18 -0.77 16 25 C -0.09 -0.56 4.43 -26.75 -0.12 -0.68 16 26 C 0.07 0.53 5.76 -3.56 -0.02 0.51 16 27 C -0.17 -1.63 4.66 -26.61 -0.12 -1.76 16 28 H 0.06 0.89 6.36 -51.93 -0.33 0.56 16 29 H 0.09 1.82 5.82 -51.93 -0.30 1.52 16 30 H 0.02 0.24 6.31 -51.93 -0.33 -0.09 16 31 H 0.09 1.24 8.00 -51.93 -0.42 0.83 16 32 H 0.05 0.68 6.90 -51.93 -0.36 0.32 16 33 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.07 0.82 6.50 -51.93 -0.34 0.48 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.05 7.04 -51.93 -0.37 0.69 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.48 6.54 -51.93 -0.34 0.14 16 46 H 0.08 0.43 7.41 -51.93 -0.38 0.05 16 47 H 0.12 0.78 2.04 -73.40 -0.15 0.64 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.76 6.47 -51.93 -0.34 0.43 16 50 H 0.08 0.69 6.68 -51.93 -0.35 0.35 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -34.45 378.81 -9.14 -43.60 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.58 Total: 9.33 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.85 Total: 4.09 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.86 Total: -54.25 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.16 Total: -22.84 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.45 -9.14 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755528233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.942 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds