Wall clock time and date at job start Tue Mar 31 2020 18:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 111.00117 * 2 1 4 4 C 1.50702 * 109.47165 * 66.04771 * 3 2 1 5 5 O 1.21291 * 119.99876 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.37097 * 120.00125 * 179.97438 * 6 4 3 8 8 H 1.07996 * 120.00089 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99802 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99878 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00261 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47131 * 90.00117 * 11 9 7 13 13 H 1.48501 * 109.47443 * 210.00293 * 11 9 7 14 14 H 1.48508 * 109.47437 * 330.00139 * 11 9 7 15 15 C 1.46903 * 110.99662 * 236.04549 * 2 1 3 16 16 C 1.53040 * 109.46093 * 298.95427 * 15 2 1 17 17 C 1.53194 * 109.31283 * 181.38629 * 16 15 2 18 18 N 1.46922 * 108.89256 * 305.29867 * 17 16 15 19 19 C 1.34782 * 120.62875 * 233.68029 * 18 17 16 20 20 O 1.21613 * 119.99626 * 353.88554 * 19 18 17 21 21 C 1.47100 * 120.00157 * 173.88733 * 19 18 17 22 22 C 1.32606 * 124.62276 * 203.11940 * 21 19 18 23 23 C 1.51113 * 110.76113 * 180.02562 * 22 21 19 24 24 C 1.54576 * 104.83695 * 16.59699 * 23 22 21 25 25 C 1.51114 * 124.61680 * 22.82342 * 21 19 18 26 26 C 1.47199 * 118.56020 * 53.53843 * 18 17 16 27 27 C 1.53039 * 109.46039 * 59.02451 * 15 2 1 28 28 H 1.08996 * 109.47212 * 183.95325 * 1 2 3 29 29 H 1.08997 * 109.46895 * 303.95431 * 1 2 3 30 30 H 1.09001 * 109.46864 * 63.95237 * 1 2 3 31 31 H 1.09006 * 109.47027 * 186.04180 * 3 2 1 32 32 H 1.08996 * 109.47209 * 306.04370 * 3 2 1 33 33 H 0.97005 * 120.00001 * 0.02562 * 6 4 3 34 34 H 0.97001 * 119.99922 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.44365 * 178.99396 * 15 2 1 36 36 H 1.08998 * 109.49959 * 61.43790 * 16 15 2 37 37 H 1.09001 * 109.52359 * 301.35329 * 16 15 2 38 38 H 1.09002 * 109.58127 * 65.15471 * 17 16 15 39 39 H 1.08998 * 109.58711 * 185.43424 * 17 16 15 40 40 H 1.08006 * 124.61811 * 0.02562 * 22 21 19 41 41 H 1.09003 * 110.36506 * 135.43913 * 23 22 21 42 42 H 1.09000 * 110.36488 * 257.75868 * 23 22 21 43 43 H 1.09002 * 110.98323 * 93.07865 * 24 23 22 44 44 H 1.09001 * 110.98076 * 216.86913 * 24 23 22 45 45 H 1.09005 * 110.36342 * 282.23743 * 25 21 19 46 46 H 1.08998 * 110.36737 * 44.56060 * 25 21 19 47 47 H 1.08999 * 109.53595 * 186.67484 * 26 18 17 48 48 H 1.08997 * 109.68013 * 66.36741 * 26 18 17 49 49 H 1.09000 * 109.49590 * 298.56512 * 27 15 2 50 50 H 1.09004 * 109.49403 * 58.63044 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0190 3.3198 1.5238 7 6 1.6924 3.9347 2.7048 8 1 1.1295 3.3991 3.4548 9 6 2.0858 5.2470 2.9368 10 7 1.7732 5.8362 4.0691 11 14 3.0602 6.1731 1.6399 12 1 2.1245 6.8772 0.7267 13 1 3.9467 7.1645 2.3008 14 1 3.8842 5.2141 0.8610 15 6 1.9954 -0.7660 -1.1376 16 6 1.5259 -2.2190 -1.0349 17 6 2.1050 -3.0224 -2.2037 18 7 1.7392 -2.3606 -3.4634 19 6 1.1177 -3.0456 -4.4437 20 8 0.9539 -4.2459 -4.3370 21 6 0.6375 -2.3414 -5.6426 22 6 -0.3309 -2.7786 -6.4360 23 6 -0.5697 -1.8119 -7.5726 24 6 0.6883 -0.9140 -7.5994 25 6 1.1763 -1.0180 -6.1343 26 6 2.0634 -0.9343 -3.6289 27 6 1.4848 -0.1543 -2.4442 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3443 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 2.5244 3.8010 0.8500 34 1 2.0475 6.7524 4.2309 35 1 3.0849 -0.7346 -1.1232 36 1 0.4372 -2.2532 -1.0740 37 1 1.8698 -2.6472 -0.0933 38 1 3.1906 -3.0652 -2.1152 39 1 1.6971 -4.0331 -2.1900 40 1 -0.8748 -3.7002 -6.2897 41 1 -0.6710 -2.3512 -8.5144 42 1 -1.4595 -1.2125 -7.3801 43 1 1.4329 -1.3059 -8.2923 44 1 0.4283 0.1147 -7.8491 45 1 0.7736 -0.1993 -5.5378 46 1 2.2657 -1.0148 -6.0980 47 1 1.6262 -0.5665 -4.5572 48 1 3.1453 -0.8048 -3.6583 49 1 0.3964 -0.2079 -2.4700 50 1 1.7993 0.8876 -2.5054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755528233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:20 Heat of formation + Delta-G solvation = -40.007206 kcal Electronic energy + Delta-G solvation = -29564.462308 eV Core-core repulsion = 25592.106825 eV Total energy + Delta-G solvation = -3972.355482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71136 -40.60852 -39.39096 -38.62913 -36.85694 -35.86841 -33.73682 -33.00779 -32.04607 -30.32143 -29.60739 -29.21725 -27.32873 -26.33274 -24.50215 -24.26952 -22.14708 -21.99129 -21.20150 -20.47026 -20.08407 -19.33844 -17.96543 -17.74862 -17.19877 -16.82120 -16.78029 -16.56460 -16.23023 -15.87195 -15.62447 -15.44580 -15.18282 -14.90764 -14.73499 -14.60586 -14.29492 -13.97985 -13.78371 -13.64325 -13.56085 -13.17442 -13.09720 -12.99632 -12.81239 -12.72585 -12.54178 -12.41677 -12.34730 -12.18208 -12.03048 -11.95612 -11.86857 -11.48015 -11.39084 -11.35070 -10.85566 -10.33934 -10.20633 -10.03295 -9.59372 -9.07827 -8.38825 -5.99638 0.41004 1.31934 1.37821 1.46953 1.93120 1.99846 2.17446 2.25601 2.63413 3.17563 3.26822 3.39168 3.62402 3.68497 3.88860 3.93433 4.02539 4.10791 4.18587 4.22864 4.26982 4.29479 4.35893 4.41473 4.47553 4.52951 4.62542 4.65361 4.72817 4.75888 4.80357 4.84037 4.86015 4.91099 4.98042 5.04521 5.07985 5.20358 5.21355 5.31024 5.32442 5.38869 5.53077 5.55857 5.57052 5.93550 6.05381 6.23398 6.38325 6.62998 6.91860 7.09006 7.43341 8.01800 8.79014 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002426 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.460055 B =11540.181343 C =12533.170845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.533 5.533 3 C 0.055 3.945 4 C 0.450 3.550 5 O -0.608 6.608 6 N -0.592 5.592 7 C -0.326 4.326 8 H 0.052 0.948 9 C -0.018 4.018 10 N -0.937 5.937 11 Si 0.966 3.034 12 H -0.256 1.256 13 H -0.278 1.278 14 H -0.228 1.228 15 C 0.087 3.913 16 C -0.118 4.118 17 C 0.116 3.884 18 N -0.601 5.601 19 C 0.558 3.442 20 O -0.595 6.595 21 C -0.213 4.213 22 C -0.077 4.077 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.092 4.092 26 C 0.066 3.934 27 C -0.167 4.167 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.390 0.610 34 H 0.278 0.722 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.143 0.857 48 H 0.089 0.911 49 H 0.061 0.939 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -10.724 -30.341 32.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.256 5.256 3 C -0.076 4.076 4 C 0.238 3.762 5 O -0.492 6.492 6 N -0.235 5.235 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.217 4.217 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.181 1.181 13 H -0.203 1.203 14 H -0.151 1.151 15 C -0.021 4.021 16 C -0.156 4.156 17 C -0.007 4.007 18 N -0.332 5.332 19 C 0.350 3.650 20 O -0.478 6.478 21 C -0.216 4.216 22 C -0.096 4.096 23 C -0.142 4.142 24 C -0.159 4.159 25 C -0.128 4.128 26 C -0.054 4.054 27 C -0.206 4.206 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.160 0.840 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.311 -11.791 -29.106 31.488 hybrid contribution -0.181 0.778 0.085 0.804 sum 2.130 -11.012 -29.020 31.113 Atomic orbital electron populations 1.22401 0.87609 1.01882 1.00306 1.61720 1.08438 1.12486 1.42973 1.21837 1.02781 0.89652 0.93300 1.20988 0.82843 0.81724 0.90634 1.90526 1.44216 1.65177 1.49274 1.42030 1.51816 1.12679 1.16943 1.18973 1.34602 0.96944 0.94993 0.92944 1.26157 0.98757 0.97023 0.99727 1.69817 1.47461 1.14299 1.26241 0.85346 0.78850 0.79012 0.78186 1.18065 1.20293 1.15079 1.21842 1.00334 0.92601 0.87274 1.21879 1.00638 0.94759 0.98352 1.21560 1.00621 0.96535 0.81980 1.48155 1.57601 1.12050 1.15394 1.18581 0.76767 0.86070 0.83614 1.90752 1.59716 1.16375 1.80938 1.21881 1.02863 1.00146 0.96723 1.24287 0.93673 0.97581 0.94093 1.21548 0.99972 0.96044 0.96589 1.22570 0.96785 1.01219 0.95314 1.21652 1.01851 0.92666 0.96611 1.23168 1.02258 0.78083 1.01936 1.22623 1.01528 1.01148 0.95317 0.91458 0.93152 0.94403 0.86122 0.89914 0.77459 0.91237 0.88396 0.92684 0.90195 0.89656 0.90727 0.85918 0.89034 0.88436 0.90330 0.88478 0.87651 0.89296 0.84023 0.89291 0.92017 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 8.46 127.69 1.08 1.87 16 2 N -0.53 -15.25 4.49 -901.45 -4.05 -19.30 16 3 C 0.06 1.58 4.89 85.56 0.42 2.00 16 4 C 0.45 19.85 7.48 87.66 0.66 20.50 16 5 O -0.61 -33.39 13.91 -3.07 -0.04 -33.43 16 6 N -0.59 -27.27 5.09 -306.99 -1.56 -28.83 16 7 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 8 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 9 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 10 N -0.94 -56.40 13.96 21.66 0.30 -56.10 16 11 Si 0.97 37.80 27.73 68.60 1.90 39.70 16 12 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 13 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 14 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 15 C 0.09 1.73 2.19 44.94 0.10 1.82 16 16 C -0.12 -2.44 5.11 30.67 0.16 -2.29 16 17 C 0.12 2.25 6.40 86.36 0.55 2.80 16 18 N -0.60 -11.11 2.98 -822.47 -2.45 -13.56 16 19 C 0.56 12.78 7.61 86.57 0.66 13.44 16 20 O -0.59 -18.71 16.32 -4.07 -0.07 -18.78 16 21 C -0.21 -3.42 5.85 -18.56 -0.11 -3.53 16 22 C -0.08 -1.11 10.50 24.66 0.26 -0.85 16 23 C -0.10 -0.78 6.80 30.52 0.21 -0.57 16 24 C -0.12 -0.67 7.17 31.74 0.23 -0.44 16 25 C -0.09 -0.75 4.43 30.58 0.14 -0.61 16 26 C 0.07 0.78 5.76 86.31 0.50 1.28 16 27 C -0.17 -2.45 4.66 30.67 0.14 -2.31 16 28 H 0.07 1.93 6.36 -2.39 -0.02 1.92 16 29 H 0.05 2.00 5.82 -2.39 -0.01 1.99 16 30 H 0.04 0.97 6.31 -2.39 -0.02 0.96 16 31 H 0.12 2.76 8.00 -2.38 -0.02 2.74 16 32 H 0.08 1.88 6.90 -2.39 -0.02 1.86 16 33 H 0.39 14.56 5.76 -92.70 -0.53 14.02 16 34 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.10 1.69 8.03 -2.38 -0.02 1.68 16 36 H 0.05 1.29 6.50 -2.39 -0.02 1.28 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.74 7.04 -2.39 -0.02 1.73 16 40 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.11 0.60 6.54 -2.38 -0.02 0.58 16 46 H 0.09 0.58 7.41 -2.39 -0.02 0.56 16 47 H 0.14 1.18 2.04 -22.55 -0.05 1.13 16 48 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 1.08 6.47 -2.39 -0.02 1.06 16 50 H 0.10 1.13 6.68 -2.39 -0.02 1.11 16 Total: -1.00 -83.77 378.81 0.67 -83.09 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.34 Total: 32.69 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.30 Total: 14.51 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -7.76 Total: -117.79 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.11 Total: -52.21 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.70 kcal Total: -83.77 0.67 -83.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755528233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.088 kcal (2) G-P(sol) polarization free energy of solvation -83.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds