Wall clock time and date at job start Tue Mar 31 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00140 * 2 1 4 4 C 1.46905 * 110.99721 * 123.95501 * 2 1 3 5 5 C 1.53001 * 109.46923 * 169.99843 * 4 2 1 6 6 C 1.52998 * 109.46803 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46563 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99931 * 269.99851 * 7 6 5 9 9 C 1.34776 * 119.99835 * 90.00637 * 7 6 5 10 10 O 1.21586 * 120.00194 * 359.97438 * 9 7 6 11 11 N 1.34783 * 119.99844 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00093 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.09005 * 109.47186 * 296.04607 * 1 2 3 29 29 H 1.08998 * 109.47065 * 56.04541 * 1 2 3 30 30 H 1.08995 * 109.47495 * 176.05101 * 1 2 3 31 31 H 1.08998 * 109.47002 * 183.95275 * 3 2 1 32 32 H 1.08998 * 109.46549 * 303.95327 * 3 2 1 33 33 H 1.08997 * 109.46915 * 63.95125 * 3 2 1 34 34 H 1.09001 * 109.47356 * 49.99469 * 4 2 1 35 35 H 1.09002 * 109.46914 * 289.99395 * 4 2 1 36 36 H 1.09001 * 109.46929 * 59.99434 * 5 4 2 37 37 H 1.08995 * 109.47155 * 299.99826 * 5 4 2 38 38 H 1.08996 * 109.47164 * 60.00632 * 6 5 4 39 39 H 1.08995 * 109.47529 * 300.00095 * 6 5 4 40 40 H 1.09008 * 109.47437 * 270.00326 * 8 7 6 41 41 H 1.09004 * 109.47313 * 30.00339 * 8 7 6 42 42 H 1.09007 * 109.47099 * 150.00545 * 8 7 6 43 43 H 0.97004 * 119.99718 * 0.02562 * 11 9 7 44 44 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 45 45 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 46 46 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 47 47 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 48 48 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 49 49 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 50 50 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9704 6 6 4.0527 -1.7527 2.1555 7 7 5.4975 -1.9346 1.9950 8 6 6.0137 -3.1063 1.2831 9 6 6.3518 -1.0240 2.5024 10 8 5.9234 -0.0513 3.0930 11 7 7.6810 -1.1915 2.3552 12 6 8.6096 -0.2015 2.9062 13 6 10.0260 -0.6200 2.6069 14 6 10.7134 -1.4210 3.5010 15 6 12.0134 -1.8067 3.2302 16 6 12.6273 -1.3984 2.0622 17 6 11.9420 -0.5897 1.1654 18 8 12.5448 -0.1818 0.0195 19 6 13.8474 -0.4951 -0.1320 20 1 14.3422 -1.1157 0.6004 21 6 14.5516 -0.0206 -1.2281 22 7 13.9490 0.7356 -2.1200 23 14 16.3565 -0.4542 -1.4376 24 1 16.4760 -1.7118 -2.2182 25 1 17.0489 0.6439 -2.1588 26 1 16.9793 -0.6393 -0.1023 27 6 10.6364 -0.2033 1.4406 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5088 -1.7407 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0192 0.9323 37 1 3.7023 -1.4967 0.0452 38 1 3.5663 -2.7274 2.1939 39 1 3.8548 -1.2112 3.0805 40 1 6.1740 -3.9199 1.9907 41 1 5.2930 -3.4189 0.5273 42 1 6.9580 -2.8521 0.8017 43 1 8.0228 -1.9674 1.8837 44 1 8.4706 -0.1341 3.9852 45 1 8.4150 0.7707 2.4534 46 1 10.2337 -1.7457 4.4126 47 1 12.5475 -2.4317 3.9304 48 1 13.6408 -1.7042 1.8488 49 1 14.4418 1.0679 -2.8866 50 1 10.0995 0.4226 0.7433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771652321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:09 Heat of formation + Delta-G solvation = -21.104450 kcal Electronic energy + Delta-G solvation = -28045.865793 eV Core-core repulsion = 24074.329996 eV Total energy + Delta-G solvation = -3971.535797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.23954 -39.11047 -38.02049 -36.89431 -35.79354 -34.55725 -32.42981 -32.26201 -30.55810 -29.12611 -27.89414 -27.47463 -26.55226 -25.51664 -24.82768 -22.91774 -21.71245 -21.10596 -20.82368 -19.92310 -18.40814 -17.56050 -16.99418 -16.53888 -15.94634 -15.89873 -15.49465 -15.21431 -14.94204 -14.64895 -14.56288 -14.35947 -14.25750 -13.81990 -13.64814 -13.56806 -13.31668 -12.77416 -12.69143 -12.65037 -12.52278 -12.34700 -12.20240 -12.12018 -11.95445 -11.75892 -11.65690 -11.53310 -11.37682 -10.93445 -10.82323 -10.77572 -10.70098 -10.48352 -10.10414 -9.41627 -9.07099 -8.89984 -8.68576 -8.60082 -8.25640 -7.33555 -6.49722 -4.09283 1.86694 2.26055 2.73215 3.09385 3.10757 3.15475 3.23440 3.66013 3.91946 4.00059 4.52379 4.63585 4.79643 4.83200 4.91596 4.93262 5.03607 5.07040 5.07855 5.10247 5.26194 5.28623 5.28803 5.30518 5.43975 5.47906 5.50989 5.52335 5.54567 5.68617 5.77646 5.83707 5.85635 5.95312 6.04624 6.07261 6.24787 6.38330 6.55424 6.58452 6.69237 6.72048 6.81507 6.88021 6.99740 7.19256 7.26963 7.35147 7.70343 7.94232 7.96850 8.62581 8.95586 9.64306 10.68000 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.001983 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.066264 B =14116.659707 C =15277.741754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.058 3.942 5 C -0.134 4.134 6 C 0.137 3.863 7 N -0.635 5.635 8 C 0.078 3.922 9 C 0.705 3.295 10 O -0.594 6.594 11 N -0.736 5.736 12 C 0.186 3.814 13 C -0.073 4.073 14 C -0.194 4.194 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.170 4.170 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.399 0.601 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.128 0.872 49 H 0.271 0.729 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.371 -6.981 6.567 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.071 4.071 5 C -0.173 4.173 6 C 0.013 3.987 7 N -0.372 5.372 8 C -0.065 4.065 9 C 0.406 3.594 10 O -0.472 6.472 11 N -0.392 5.392 12 C 0.062 3.938 13 C -0.073 4.073 14 C -0.214 4.214 15 C -0.095 4.095 16 C -0.245 4.245 17 C 0.096 3.904 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.190 4.190 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.235 0.765 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.145 0.855 49 H 0.081 0.919 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.531 -6.230 6.151 22.320 hybrid contribution 0.948 -0.277 0.311 1.035 sum -19.583 -6.507 6.462 21.624 Atomic orbital electron populations 1.22379 0.87391 1.02164 1.00475 1.61976 1.07716 1.14294 1.43214 1.22451 1.01488 0.88450 1.00388 1.22055 0.95432 0.98135 0.91434 1.21996 0.94357 1.01825 0.99143 1.21217 0.78424 1.00093 0.98987 1.46980 1.06024 1.24446 1.59797 1.21745 1.00289 0.87790 0.96714 1.15893 0.81230 0.82672 0.79609 1.90898 1.77239 1.30932 1.48137 1.45417 1.03978 1.28426 1.61388 1.19998 0.84191 0.91071 0.98506 1.19286 0.94187 0.98998 0.94866 1.20486 0.95732 1.04630 1.00533 1.20744 0.94480 0.98233 0.96013 1.21237 1.01965 1.04711 0.96604 1.19328 0.92159 0.92187 0.86721 1.83983 1.25376 1.67725 1.30870 1.21320 0.83080 1.32599 1.09943 0.89041 1.25298 1.00219 0.95932 0.95049 1.70033 1.36968 1.31361 1.11164 0.85710 0.80396 0.78374 0.78938 1.19864 1.20218 1.19176 1.20094 0.94169 1.06261 0.98467 0.95727 0.91381 0.91398 0.90802 0.91475 0.95543 0.90778 0.94570 0.91122 0.91033 0.90734 0.89933 0.92611 0.90744 0.91185 0.76530 0.91148 0.91077 0.87507 0.87297 0.85478 0.91946 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.06 0.57 0.74 16 2 N -0.55 -4.91 5.02 -251.26 -1.26 -6.17 16 3 C 0.02 0.18 9.32 60.06 0.56 0.74 16 4 C 0.06 0.48 4.96 -3.82 -0.02 0.46 16 5 C -0.13 -1.27 5.46 -26.73 -0.15 -1.41 16 6 C 0.14 1.28 5.41 -4.04 -0.02 1.26 16 7 N -0.63 -6.99 2.87 -187.35 -0.54 -7.53 16 8 C 0.08 0.63 10.20 59.85 0.61 1.24 16 9 C 0.70 10.23 8.28 -86.91 -0.72 9.51 16 10 O -0.59 -10.65 15.92 5.29 0.08 -10.57 16 11 N -0.74 -10.14 5.41 -66.42 -0.36 -10.50 16 12 C 0.19 2.81 5.80 -5.19 -0.03 2.78 16 13 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 14 C -0.19 -3.17 9.70 -39.53 -0.38 -3.55 16 15 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 16 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 17 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 18 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 19 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 20 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 23 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 0.73 6.47 -51.93 -0.34 0.39 16 32 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 39 H 0.08 0.90 7.42 -51.93 -0.39 0.51 16 40 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 41 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 42 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 43 H 0.40 4.92 6.19 -40.82 -0.25 4.67 16 44 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 45 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 49 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 409.71 15.07 6.17 6.17 Total: -1.00 -32.47 409.71 -9.58 -42.06 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.09 Total: 7.27 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.33 Total: -6.83 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -1.40 Total: -48.31 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.47 -9.58 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771652321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.952 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds