Wall clock time and date at job start Tue Mar 31 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00140 * 2 1 4 4 C 1.46905 * 110.99721 * 123.95501 * 2 1 3 5 5 C 1.53001 * 109.46923 * 169.99843 * 4 2 1 6 6 C 1.52998 * 109.46803 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46563 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99931 * 269.99851 * 7 6 5 9 9 C 1.34776 * 119.99835 * 90.00637 * 7 6 5 10 10 O 1.21586 * 120.00194 * 359.97438 * 9 7 6 11 11 N 1.34783 * 119.99844 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00093 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.09005 * 109.47186 * 296.04607 * 1 2 3 29 29 H 1.08998 * 109.47065 * 56.04541 * 1 2 3 30 30 H 1.08995 * 109.47495 * 176.05101 * 1 2 3 31 31 H 1.08998 * 109.47002 * 183.95275 * 3 2 1 32 32 H 1.08998 * 109.46549 * 303.95327 * 3 2 1 33 33 H 1.08997 * 109.46915 * 63.95125 * 3 2 1 34 34 H 1.09001 * 109.47356 * 49.99469 * 4 2 1 35 35 H 1.09002 * 109.46914 * 289.99395 * 4 2 1 36 36 H 1.09001 * 109.46929 * 59.99434 * 5 4 2 37 37 H 1.08995 * 109.47155 * 299.99826 * 5 4 2 38 38 H 1.08996 * 109.47164 * 60.00632 * 6 5 4 39 39 H 1.08995 * 109.47529 * 300.00095 * 6 5 4 40 40 H 1.09008 * 109.47437 * 270.00326 * 8 7 6 41 41 H 1.09004 * 109.47313 * 30.00339 * 8 7 6 42 42 H 1.09007 * 109.47099 * 150.00545 * 8 7 6 43 43 H 0.97004 * 119.99718 * 0.02562 * 11 9 7 44 44 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 45 45 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 46 46 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 47 47 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 48 48 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 49 49 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 50 50 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9704 6 6 4.0527 -1.7527 2.1555 7 7 5.4975 -1.9346 1.9950 8 6 6.0137 -3.1063 1.2831 9 6 6.3518 -1.0240 2.5024 10 8 5.9234 -0.0513 3.0930 11 7 7.6810 -1.1915 2.3552 12 6 8.6096 -0.2015 2.9062 13 6 10.0260 -0.6200 2.6069 14 6 10.7134 -1.4210 3.5010 15 6 12.0134 -1.8067 3.2302 16 6 12.6273 -1.3984 2.0622 17 6 11.9420 -0.5897 1.1654 18 8 12.5448 -0.1818 0.0195 19 6 13.8474 -0.4951 -0.1320 20 1 14.3422 -1.1157 0.6004 21 6 14.5516 -0.0206 -1.2281 22 7 13.9490 0.7356 -2.1200 23 14 16.3565 -0.4542 -1.4376 24 1 16.4760 -1.7118 -2.2182 25 1 17.0489 0.6439 -2.1588 26 1 16.9793 -0.6393 -0.1023 27 6 10.6364 -0.2033 1.4406 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5088 -1.7407 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0192 0.9323 37 1 3.7023 -1.4967 0.0452 38 1 3.5663 -2.7274 2.1939 39 1 3.8548 -1.2112 3.0805 40 1 6.1740 -3.9199 1.9907 41 1 5.2930 -3.4189 0.5273 42 1 6.9580 -2.8521 0.8017 43 1 8.0228 -1.9674 1.8837 44 1 8.4706 -0.1341 3.9852 45 1 8.4150 0.7707 2.4534 46 1 10.2337 -1.7457 4.4126 47 1 12.5475 -2.4317 3.9304 48 1 13.6408 -1.7042 1.8488 49 1 14.4418 1.0679 -2.8866 50 1 10.0995 0.4226 0.7433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771652321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:08 Heat of formation + Delta-G solvation = -42.916757 kcal Electronic energy + Delta-G solvation = -28046.811646 eV Core-core repulsion = 24074.329996 eV Total energy + Delta-G solvation = -3972.481650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36327 -40.73093 -38.80445 -38.45251 -36.77505 -35.84218 -34.29084 -33.23779 -31.89634 -30.73412 -28.53679 -28.19764 -27.77884 -27.18577 -26.01189 -23.75500 -23.25223 -22.42202 -21.81072 -21.00872 -19.74337 -19.14031 -18.57531 -17.58464 -16.98144 -16.72919 -16.62743 -16.41575 -16.25691 -16.10432 -15.71190 -15.54684 -15.42390 -15.06980 -15.02059 -14.66518 -14.43652 -14.21145 -13.93427 -13.64304 -13.38493 -13.35096 -13.28463 -13.17667 -13.02076 -12.88283 -12.60323 -12.52352 -12.42377 -12.35810 -12.27393 -12.25672 -12.11437 -11.54869 -11.31925 -11.19879 -10.80910 -10.24556 -9.77619 -9.52309 -9.35680 -9.03671 -8.46731 -6.15322 0.36612 0.70357 1.36005 1.44679 1.53426 1.72642 2.11332 2.17690 2.76663 2.97350 3.07616 3.21008 3.40582 3.82130 3.91863 4.08469 4.09722 4.18161 4.25222 4.30832 4.36006 4.41619 4.43013 4.45875 4.53000 4.61177 4.62132 4.63529 4.68163 4.72818 4.76276 4.80811 4.90123 4.95854 5.00858 5.01872 5.09347 5.12095 5.25481 5.25851 5.41481 5.55908 5.62604 5.70614 5.72059 5.90723 6.01671 6.01915 6.09473 6.16648 6.92049 6.97987 7.51911 7.78353 8.76334 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.001983 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.066264 B =14116.659707 C =15277.741754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.022 3.978 4 C 0.062 3.938 5 C -0.124 4.124 6 C 0.136 3.864 7 N -0.630 5.630 8 C 0.073 3.927 9 C 0.699 3.301 10 O -0.633 6.633 11 N -0.731 5.731 12 C 0.193 3.807 13 C -0.058 4.058 14 C -0.167 4.167 15 C -0.068 4.068 16 C -0.233 4.233 17 C 0.112 3.888 18 O -0.232 6.232 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.252 1.252 27 C -0.181 4.181 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.096 0.904 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.407 0.593 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.148 0.852 47 H 0.150 0.850 48 H 0.122 0.878 49 H 0.272 0.728 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.231 -9.813 8.792 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.286 5.286 3 C -0.126 4.126 4 C -0.067 4.067 5 C -0.163 4.163 6 C 0.013 3.987 7 N -0.367 5.367 8 C -0.069 4.069 9 C 0.400 3.600 10 O -0.515 6.515 11 N -0.388 5.388 12 C 0.069 3.931 13 C -0.059 4.059 14 C -0.186 4.186 15 C -0.086 4.086 16 C -0.252 4.252 17 C 0.062 3.938 18 O -0.139 6.139 19 C -0.488 4.488 20 H 0.122 0.878 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.175 1.175 27 C -0.201 4.201 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.244 0.756 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.165 0.835 47 H 0.168 0.832 48 H 0.139 0.861 49 H 0.081 0.919 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.435 -9.124 8.408 24.767 hybrid contribution 0.932 0.519 -0.142 1.076 sum -20.503 -8.605 8.265 23.722 Atomic orbital electron populations 1.22432 0.86014 1.03126 1.00821 1.61998 1.09057 1.14023 1.43540 1.22402 1.00527 0.88996 1.00664 1.22044 0.94565 0.99064 0.90996 1.21871 0.95126 1.00037 0.99260 1.21354 0.77663 1.01709 0.97963 1.47096 1.06290 1.24364 1.58907 1.21971 1.00593 0.86915 0.97459 1.16085 0.81512 0.82807 0.79603 1.90870 1.77863 1.32749 1.50030 1.45241 1.03769 1.28337 1.61442 1.19850 0.83240 0.90850 0.99161 1.19430 0.94940 0.98072 0.93459 1.20991 0.95037 1.01712 1.00845 1.21165 0.94860 0.97614 0.94988 1.21375 1.01893 1.04460 0.97497 1.19847 0.93343 0.93732 0.86882 1.83951 1.25962 1.70386 1.33595 1.21829 0.83543 1.32887 1.10548 0.87831 1.26598 1.05397 0.95717 0.94462 1.70187 1.39229 1.34087 1.12419 0.84586 0.73805 0.78304 0.79529 1.18738 1.19888 1.17522 1.20201 0.93476 1.06667 0.99719 0.95518 0.90885 0.90151 0.92466 0.90590 0.95786 0.88595 0.95149 0.94422 0.90953 0.87108 0.91637 0.90703 0.88619 0.91772 0.75567 0.89799 0.92496 0.83450 0.83211 0.86060 0.91902 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.57 127.69 1.22 1.52 16 2 N -0.56 -9.56 5.02 -948.84 -4.76 -14.32 16 3 C 0.02 0.41 9.32 127.69 1.19 1.60 16 4 C 0.06 0.94 4.96 86.30 0.43 1.37 16 5 C -0.12 -2.26 5.46 30.59 0.17 -2.09 16 6 C 0.14 2.32 5.41 86.38 0.47 2.79 16 7 N -0.63 -12.82 2.87 -864.90 -2.48 -15.30 16 8 C 0.07 0.97 10.20 127.77 1.30 2.27 16 9 C 0.70 19.69 8.28 179.05 1.48 21.18 16 10 O -0.63 -22.79 15.92 -3.99 -0.06 -22.85 16 11 N -0.73 -19.15 5.41 -482.30 -2.61 -21.76 16 12 C 0.19 5.59 5.80 85.63 0.50 6.08 16 13 C -0.06 -1.88 5.25 -19.88 -0.10 -1.99 16 14 C -0.17 -4.75 9.70 22.30 0.22 -4.54 16 15 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 16 C -0.23 -9.51 9.17 22.39 0.21 -9.31 16 17 C 0.11 5.39 6.65 22.58 0.15 5.54 16 18 O -0.23 -13.72 9.76 -22.74 -0.22 -13.94 16 19 C -0.41 -23.49 9.49 67.92 0.64 -22.85 16 20 H 0.10 5.35 5.21 -2.91 -0.02 5.34 16 21 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 22 N -0.92 -56.25 13.67 21.61 0.30 -55.96 16 23 Si 1.02 42.17 29.55 68.60 2.03 44.20 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 27 C -0.18 -7.49 9.65 22.39 0.22 -7.27 16 28 H 0.03 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.06 1.21 6.47 -2.39 -0.02 1.19 16 32 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 33 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.10 1.05 8.06 -2.39 -0.02 1.04 16 35 H 0.03 0.50 8.12 -2.39 -0.02 0.48 16 36 H 0.04 0.94 6.55 -2.39 -0.02 0.92 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 39 H 0.07 1.37 7.42 -2.39 -0.02 1.36 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 42 H 0.06 0.95 6.36 -2.38 -0.02 0.93 16 43 H 0.41 9.31 6.19 -92.71 -0.57 8.73 16 44 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 45 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 46 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 47 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 48 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 49 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 50 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -76.43 409.71 1.31 -75.12 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.36 Total: 33.31 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 8.77 Total: -8.49 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -9.56 Total: -107.34 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.29 Total: -36.79 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -76.43 1.31 -75.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771652321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.199 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds