Wall clock time and date at job start Tue Mar 31 2020 20:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46923 * 2 1 4 4 N 1.33472 * 125.50201 * 90.01815 * 3 2 1 5 5 C 1.30327 * 109.72769 * 180.02562 * 4 3 2 6 6 N 1.34682 * 108.04231 * 359.92536 * 5 4 3 7 7 N 1.30982 * 125.49078 * 270.04423 * 3 2 1 8 8 C 1.46298 * 125.04478 * 180.14644 * 6 5 4 9 9 C 1.53303 * 108.77318 * 17.02094 * 8 6 5 10 10 H 1.09008 * 109.46571 * 69.85430 * 9 8 6 11 11 N 1.46900 * 109.46927 * 189.84842 * 9 8 6 12 12 C 1.46900 * 111.00117 * 272.38802 * 11 9 8 13 13 H 1.09000 * 109.47468 * 31.46017 * 12 11 9 14 14 C 1.53002 * 109.47159 * 151.46509 * 12 11 9 15 15 C 1.50707 * 109.46890 * 271.46182 * 12 11 9 16 16 O 1.21285 * 119.99563 * 359.72815 * 15 12 11 17 17 N 1.34772 * 119.99788 * 180.02562 * 15 12 11 18 18 C 1.46498 * 120.00232 * 359.72793 * 17 15 12 19 19 C 1.46505 * 119.99767 * 179.72572 * 17 15 12 20 20 C 1.50697 * 109.46942 * 90.00243 * 19 17 15 21 21 H 1.08002 * 120.00133 * 359.97438 * 20 19 17 22 22 C 1.37881 * 119.99712 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99698 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99948 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47001 * 90.00527 * 24 22 20 26 26 H 1.48499 * 109.47013 * 210.00113 * 24 22 20 27 27 H 1.48496 * 109.47423 * 330.00002 * 24 22 20 28 28 C 1.53157 * 109.48057 * 309.85459 * 9 8 6 29 29 C 1.50924 * 127.90654 * 179.91704 * 5 4 3 30 30 H 1.09004 * 109.46964 * 60.01095 * 1 2 3 31 31 H 1.09006 * 109.46523 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47351 * 300.00361 * 1 2 3 33 33 H 1.08997 * 109.47784 * 239.99329 * 2 1 3 34 34 H 1.09006 * 109.46791 * 119.99414 * 2 1 3 35 35 H 1.08998 * 109.58969 * 257.23097 * 8 6 5 36 36 H 1.09005 * 109.58235 * 136.80475 * 8 6 5 37 37 H 1.00903 * 110.99695 * 148.43022 * 11 9 8 38 38 H 1.09000 * 109.46981 * 307.47188 * 14 12 11 39 39 H 1.09005 * 109.47247 * 67.46942 * 14 12 11 40 40 H 1.08998 * 109.47238 * 187.46728 * 14 12 11 41 41 H 1.08998 * 109.47567 * 89.99754 * 18 17 15 42 42 H 1.08997 * 109.46996 * 209.99986 * 18 17 15 43 43 H 1.08999 * 109.47145 * 329.99990 * 18 17 15 44 44 H 1.09001 * 109.46666 * 209.99974 * 19 17 15 45 45 H 1.09000 * 109.47053 * 329.99718 * 19 17 15 46 46 H 0.97000 * 119.99940 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.50182 * 189.11890 * 28 9 8 48 48 H 1.09001 * 109.50979 * 309.25227 * 28 9 8 49 49 H 1.09007 * 109.71507 * 76.25405 * 29 5 4 50 50 H 1.08992 * 109.72034 * 315.60400 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2910 2.1515 1.0866 5 6 2.7084 3.3342 0.7323 6 7 2.7269 3.3842 -0.6135 7 7 2.2850 2.1381 -1.0665 8 6 3.1395 4.5430 -1.4055 9 6 3.9300 5.4996 -0.5054 10 1 4.8922 5.0520 -0.2560 11 7 4.1488 6.7686 -1.2123 12 6 5.3726 6.7152 -2.0233 13 1 5.5317 5.6956 -2.3743 14 6 5.2295 7.6518 -3.2247 15 6 6.5490 7.1478 -1.1865 16 8 6.3833 7.4735 -0.0300 17 7 7.7840 7.1783 -1.7250 18 6 7.9839 6.7853 -3.1221 19 6 8.9267 7.6045 -0.9133 20 6 9.5298 6.4063 -0.2266 21 1 9.1043 5.4254 -0.3792 22 6 10.6243 6.5624 0.5973 23 7 11.1503 5.5167 1.1970 24 14 11.3599 8.2589 0.8617 25 1 10.7034 8.9072 2.0253 26 1 12.8162 8.1318 1.1226 27 1 11.1449 9.0865 -0.3524 28 6 3.1401 5.7611 0.7804 29 6 3.1121 4.4813 1.6262 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2578 5.0522 -1.7947 36 1 3.7694 4.2148 -2.2324 37 1 4.1770 7.5426 -0.5656 38 1 4.3054 7.4231 -3.7556 39 1 5.2035 8.6852 -2.8788 40 1 6.0775 7.5145 -3.8955 41 1 7.8807 7.6601 -3.7640 42 1 8.9816 6.3627 -3.2415 43 1 7.2382 6.0405 -3.4003 44 1 9.6747 8.0701 -1.5551 45 1 8.5927 8.3226 -0.1644 46 1 11.9205 5.6264 1.7763 47 1 3.6192 6.5606 1.3457 48 1 2.1206 6.0531 0.5283 49 1 4.1023 4.2931 2.0413 50 1 2.3887 4.5902 2.4341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105873061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:10 Heat of formation + Delta-G solvation = 53.199871 kcal Electronic energy + Delta-G solvation = -29747.808632 eV Core-core repulsion = 25811.787663 eV Total energy + Delta-G solvation = -3936.020969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.38249 -39.89582 -37.84802 -35.28240 -34.96231 -33.66739 -33.12895 -32.58455 -30.77330 -29.84417 -28.48277 -27.48543 -26.30952 -24.70321 -23.93881 -23.71517 -22.36876 -21.55420 -20.31651 -19.53565 -18.79573 -17.32802 -17.03430 -16.41037 -16.36063 -15.96239 -15.41528 -15.07193 -14.77368 -14.67758 -14.62846 -14.24475 -14.00096 -13.75858 -13.63929 -13.33721 -13.06749 -12.93513 -12.56319 -12.46910 -12.32258 -12.17700 -12.10312 -11.89859 -11.77614 -11.70279 -11.47771 -11.34212 -11.28942 -11.10854 -10.97641 -10.94347 -10.60979 -10.23719 -10.02917 -9.72765 -9.65769 -9.50173 -9.31451 -8.67493 -8.61138 -7.86102 -6.17030 -4.16894 1.58049 2.18869 2.83577 3.10873 3.22260 3.28329 3.29814 3.63205 3.81152 3.84299 4.17176 4.31513 4.45521 4.57195 4.67687 4.79350 4.89102 5.00946 5.05081 5.10004 5.12347 5.15870 5.16898 5.19045 5.32391 5.39452 5.46533 5.48077 5.62585 5.63417 5.64655 5.71415 5.76280 5.78362 5.87371 5.89964 5.96866 5.99523 6.16725 6.32583 6.41360 6.54054 6.63330 6.79251 6.83181 7.14082 7.19178 7.51020 8.07360 8.11393 8.36155 8.72724 8.85337 9.42438 10.96213 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002841 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.867676 B = 9851.908795 C =10745.629020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C 0.217 3.783 4 N -0.539 5.539 5 C 0.281 3.719 6 N -0.372 5.372 7 N -0.316 5.316 8 C 0.140 3.860 9 C 0.073 3.927 10 H 0.067 0.933 11 N -0.654 5.654 12 C 0.061 3.939 13 H 0.097 0.903 14 C -0.144 4.144 15 C 0.481 3.519 16 O -0.544 6.544 17 N -0.590 5.590 18 C 0.079 3.921 19 C 0.215 3.785 20 C -0.531 4.531 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 C -0.127 4.127 29 C -0.041 4.041 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.364 0.636 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.265 0.735 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.817 -1.642 -7.465 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.065 4.065 4 N -0.267 5.267 5 C 0.005 3.995 6 N -0.163 5.163 7 N -0.144 5.144 8 C 0.017 3.983 9 C -0.039 4.039 10 H 0.085 0.915 11 N -0.289 5.289 12 C -0.053 4.053 13 H 0.115 0.885 14 C -0.201 4.201 15 C 0.266 3.734 16 O -0.423 6.423 17 N -0.321 5.321 18 C -0.064 4.064 19 C 0.094 3.906 20 C -0.570 4.570 21 H 0.090 0.910 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.191 1.191 28 C -0.165 4.165 29 C -0.081 4.081 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.187 0.813 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.122 0.878 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.240 -1.957 -7.741 20.831 hybrid contribution 1.519 0.971 0.792 1.969 sum -17.720 -0.986 -6.949 19.060 Atomic orbital electron populations 1.21699 0.93905 1.02161 1.02421 1.19849 0.96261 0.86593 1.03994 1.24343 0.98432 0.98068 0.85619 1.70157 1.23059 1.02669 1.30832 1.24317 0.95979 0.95138 0.84076 1.50141 1.49063 1.11186 1.05924 1.77888 1.22882 0.91069 1.22575 1.21844 1.00589 0.82028 0.93838 1.21751 0.98531 0.91209 0.92381 0.91458 1.60654 1.34647 1.04655 1.28915 1.21769 0.87476 1.01486 0.94535 0.88526 1.21924 1.03062 0.99128 0.96022 1.21287 0.84920 0.78990 0.88190 1.90655 1.84631 1.49548 1.17424 1.47840 1.07948 1.64414 1.11929 1.21855 1.03085 0.99088 0.82400 1.19692 0.83242 0.96684 0.91001 1.21276 1.13452 0.94361 1.27876 0.90965 1.24869 0.96411 0.96772 0.94941 1.69896 1.23486 1.29522 1.30461 0.86833 0.78600 0.84788 0.79357 1.19894 1.20979 1.19086 1.21912 1.01660 0.97777 0.95136 1.20390 1.04148 0.87689 0.95846 0.92554 0.91600 0.92218 0.89681 0.89157 0.88525 0.89037 0.81304 0.91069 0.92222 0.90754 0.93011 0.90540 0.91974 0.95180 0.94565 0.92456 0.88597 0.90276 0.87770 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.03 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C 0.22 3.10 7.40 -156.42 -1.16 1.94 16 4 N -0.54 -8.21 11.18 -8.03 -0.09 -8.30 16 5 C 0.28 3.95 7.72 -155.78 -1.20 2.75 16 6 N -0.37 -5.22 4.04 -58.29 -0.24 -5.45 16 7 N -0.32 -4.79 12.74 32.51 0.41 -4.37 16 8 C 0.14 1.61 6.78 -3.99 -0.03 1.58 16 9 C 0.07 0.87 2.27 -67.48 -0.15 0.72 16 10 H 0.07 1.01 7.71 -51.92 -0.40 0.61 16 11 N -0.65 -7.65 5.94 -100.70 -0.60 -8.24 16 12 C 0.06 0.78 2.00 -68.86 -0.14 0.64 16 13 H 0.10 1.19 6.67 -51.93 -0.35 0.84 16 14 C -0.14 -1.45 9.08 37.16 0.34 -1.11 16 15 C 0.48 8.77 6.94 -10.98 -0.08 8.70 16 16 O -0.54 -11.89 15.28 5.55 0.08 -11.81 16 17 N -0.59 -11.28 2.86 -182.95 -0.52 -11.81 16 18 C 0.08 1.12 8.79 59.85 0.53 1.64 16 19 C 0.21 5.04 4.23 -5.19 -0.02 5.02 16 20 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 21 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 24 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 28 C -0.13 -1.31 5.31 -26.43 -0.14 -1.45 16 29 C -0.04 -0.45 6.33 -27.55 -0.17 -0.62 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.03 7.82 -51.93 -0.41 0.63 16 37 H 0.36 4.60 7.06 -39.29 -0.28 4.33 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.07 0.68 4.78 -51.93 -0.25 0.43 16 41 H 0.05 0.59 7.11 -51.93 -0.37 0.22 16 42 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 43 H 0.06 0.72 5.94 -51.93 -0.31 0.41 16 44 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 45 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 47 H 0.10 1.01 7.93 -51.92 -0.41 0.59 16 48 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 49 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 50 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -35.21 395.89 -9.51 -44.72 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.15 Total: 4.08 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.48 Total: 5.25 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.26 Total: -64.69 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.21 -9.51 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105873061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.923 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds