Wall clock time and date at job start Tue Mar 31 2020 20:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46923 * 2 1 4 4 N 1.33472 * 125.50201 * 90.01815 * 3 2 1 5 5 C 1.30327 * 109.72769 * 180.02562 * 4 3 2 6 6 N 1.34682 * 108.04231 * 359.92536 * 5 4 3 7 7 N 1.30982 * 125.49078 * 270.04423 * 3 2 1 8 8 C 1.46298 * 125.04478 * 180.14644 * 6 5 4 9 9 C 1.53303 * 108.77318 * 17.02094 * 8 6 5 10 10 H 1.09008 * 109.46571 * 69.85430 * 9 8 6 11 11 N 1.46900 * 109.46927 * 189.84842 * 9 8 6 12 12 C 1.46900 * 111.00117 * 272.38802 * 11 9 8 13 13 H 1.09000 * 109.47468 * 31.46017 * 12 11 9 14 14 C 1.53002 * 109.47159 * 151.46509 * 12 11 9 15 15 C 1.50707 * 109.46890 * 271.46182 * 12 11 9 16 16 O 1.21285 * 119.99563 * 359.72815 * 15 12 11 17 17 N 1.34772 * 119.99788 * 180.02562 * 15 12 11 18 18 C 1.46498 * 120.00232 * 359.72793 * 17 15 12 19 19 C 1.46505 * 119.99767 * 179.72572 * 17 15 12 20 20 C 1.50697 * 109.46942 * 90.00243 * 19 17 15 21 21 H 1.08002 * 120.00133 * 359.97438 * 20 19 17 22 22 C 1.37881 * 119.99712 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99698 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99948 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47001 * 90.00527 * 24 22 20 26 26 H 1.48499 * 109.47013 * 210.00113 * 24 22 20 27 27 H 1.48496 * 109.47423 * 330.00002 * 24 22 20 28 28 C 1.53157 * 109.48057 * 309.85459 * 9 8 6 29 29 C 1.50924 * 127.90654 * 179.91704 * 5 4 3 30 30 H 1.09004 * 109.46964 * 60.01095 * 1 2 3 31 31 H 1.09006 * 109.46523 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47351 * 300.00361 * 1 2 3 33 33 H 1.08997 * 109.47784 * 239.99329 * 2 1 3 34 34 H 1.09006 * 109.46791 * 119.99414 * 2 1 3 35 35 H 1.08998 * 109.58969 * 257.23097 * 8 6 5 36 36 H 1.09005 * 109.58235 * 136.80475 * 8 6 5 37 37 H 1.00903 * 110.99695 * 148.43022 * 11 9 8 38 38 H 1.09000 * 109.46981 * 307.47188 * 14 12 11 39 39 H 1.09005 * 109.47247 * 67.46942 * 14 12 11 40 40 H 1.08998 * 109.47238 * 187.46728 * 14 12 11 41 41 H 1.08998 * 109.47567 * 89.99754 * 18 17 15 42 42 H 1.08997 * 109.46996 * 209.99986 * 18 17 15 43 43 H 1.08999 * 109.47145 * 329.99990 * 18 17 15 44 44 H 1.09001 * 109.46666 * 209.99974 * 19 17 15 45 45 H 1.09000 * 109.47053 * 329.99718 * 19 17 15 46 46 H 0.97000 * 119.99940 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.50182 * 189.11890 * 28 9 8 48 48 H 1.09001 * 109.50979 * 309.25227 * 28 9 8 49 49 H 1.09007 * 109.71507 * 76.25405 * 29 5 4 50 50 H 1.08992 * 109.72034 * 315.60400 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2910 2.1515 1.0866 5 6 2.7084 3.3342 0.7323 6 7 2.7269 3.3842 -0.6135 7 7 2.2850 2.1381 -1.0665 8 6 3.1395 4.5430 -1.4055 9 6 3.9300 5.4996 -0.5054 10 1 4.8922 5.0520 -0.2560 11 7 4.1488 6.7686 -1.2123 12 6 5.3726 6.7152 -2.0233 13 1 5.5317 5.6956 -2.3743 14 6 5.2295 7.6518 -3.2247 15 6 6.5490 7.1478 -1.1865 16 8 6.3833 7.4735 -0.0300 17 7 7.7840 7.1783 -1.7250 18 6 7.9839 6.7853 -3.1221 19 6 8.9267 7.6045 -0.9133 20 6 9.5298 6.4063 -0.2266 21 1 9.1043 5.4254 -0.3792 22 6 10.6243 6.5624 0.5973 23 7 11.1503 5.5167 1.1970 24 14 11.3599 8.2589 0.8617 25 1 10.7034 8.9072 2.0253 26 1 12.8162 8.1318 1.1226 27 1 11.1449 9.0865 -0.3524 28 6 3.1401 5.7611 0.7804 29 6 3.1121 4.4813 1.6262 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2578 5.0522 -1.7947 36 1 3.7694 4.2148 -2.2324 37 1 4.1770 7.5426 -0.5656 38 1 4.3054 7.4231 -3.7556 39 1 5.2035 8.6852 -2.8788 40 1 6.0775 7.5145 -3.8955 41 1 7.8807 7.6601 -3.7640 42 1 8.9816 6.3627 -3.2415 43 1 7.2382 6.0405 -3.4003 44 1 9.6747 8.0701 -1.5551 45 1 8.5927 8.3226 -0.1644 46 1 11.9205 5.6264 1.7763 47 1 3.6192 6.5606 1.3457 48 1 2.1206 6.0531 0.5283 49 1 4.1023 4.2931 2.0413 50 1 2.3887 4.5902 2.4341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105873061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:09 Heat of formation + Delta-G solvation = 28.261236 kcal Electronic energy + Delta-G solvation = -29748.890052 eV Core-core repulsion = 25811.787663 eV Total energy + Delta-G solvation = -3937.102389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.43770 -41.22908 -38.94340 -36.77805 -36.08460 -34.85033 -34.45629 -34.05465 -31.90189 -30.87322 -30.15016 -28.49030 -27.60499 -25.65153 -25.27219 -24.80779 -23.45930 -22.97522 -21.30877 -20.55714 -20.14165 -19.18612 -18.48646 -17.59781 -17.50585 -17.28014 -16.58043 -16.36755 -16.16100 -15.81171 -15.59601 -15.41881 -15.07070 -14.93595 -14.69636 -14.55015 -14.41357 -14.10950 -13.86003 -13.71917 -13.60914 -13.34477 -13.21699 -13.00225 -12.91543 -12.81459 -12.53142 -12.51370 -12.43229 -12.29350 -12.07120 -12.06001 -11.98513 -11.89084 -11.79048 -11.13358 -10.90150 -10.86255 -10.77954 -10.35633 -9.77112 -9.43935 -8.38303 -6.44190 0.50588 1.19380 1.30261 1.33738 1.42538 1.70073 1.76755 2.26467 2.27651 2.79956 2.86169 2.96369 3.20629 3.49986 3.57736 3.65951 3.78038 3.93827 4.02752 4.14208 4.20882 4.25478 4.29024 4.36050 4.36348 4.50763 4.51993 4.57083 4.60524 4.75035 4.75656 4.82297 4.87486 4.88840 4.94635 4.98343 4.98821 5.02219 5.09914 5.23389 5.29625 5.35196 5.41333 5.43760 5.53163 5.61091 5.78600 6.10858 6.17666 6.57134 6.64350 7.03687 7.15749 7.31620 8.78733 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002841 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.867676 B = 9851.908795 C =10745.629020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.029 4.029 3 C 0.209 3.791 4 N -0.564 5.564 5 C 0.272 3.728 6 N -0.378 5.378 7 N -0.340 5.340 8 C 0.144 3.856 9 C 0.078 3.922 10 H 0.029 0.971 11 N -0.637 5.637 12 C 0.073 3.927 13 H 0.105 0.895 14 C -0.136 4.136 15 C 0.470 3.530 16 O -0.590 6.590 17 N -0.601 5.601 18 C 0.072 3.928 19 C 0.223 3.777 20 C -0.536 4.536 21 H 0.023 0.977 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.950 3.050 25 H -0.275 1.275 26 H -0.276 1.276 27 H -0.236 1.236 28 C -0.119 4.119 29 C -0.038 4.038 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.361 0.639 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.020 0.980 46 H 0.268 0.732 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.161 -0.046 -9.385 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.069 4.069 3 C -0.073 4.073 4 N -0.293 5.293 5 C -0.004 4.004 6 N -0.169 5.169 7 N -0.168 5.168 8 C 0.022 3.978 9 C -0.034 4.034 10 H 0.047 0.953 11 N -0.270 5.270 12 C -0.041 4.041 13 H 0.122 0.878 14 C -0.194 4.194 15 C 0.258 3.742 16 O -0.471 6.471 17 N -0.332 5.332 18 C -0.070 4.070 19 C 0.100 3.900 20 C -0.574 4.574 21 H 0.041 0.959 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.773 3.227 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.159 1.159 28 C -0.157 4.157 29 C -0.078 4.078 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.184 0.816 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.110 0.890 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.604 -0.363 -9.729 22.789 hybrid contribution 1.911 0.353 1.400 2.395 sum -18.693 -0.010 -8.330 20.465 Atomic orbital electron populations 1.21647 0.92472 1.03621 1.01603 1.20063 0.97406 0.84574 1.04832 1.25094 0.97714 0.99344 0.85139 1.70172 1.24055 1.03402 1.31660 1.24792 0.95534 0.95536 0.84561 1.50299 1.48979 1.11431 1.06167 1.77824 1.23965 0.91681 1.23353 1.21914 1.01242 0.81336 0.93347 1.21662 0.97070 0.91220 0.93455 0.95263 1.60761 1.33466 1.04243 1.28515 1.21872 0.85146 1.02439 0.94678 0.87754 1.21933 1.04901 0.97879 0.94647 1.22382 0.85892 0.77770 0.88201 1.90620 1.85447 1.51403 1.19629 1.47954 1.07143 1.64549 1.13553 1.22178 1.03268 1.01440 0.80070 1.19336 0.84994 0.94276 0.91376 1.21526 1.13458 0.94072 1.28382 0.95850 1.25895 0.96982 1.01476 0.94499 1.70060 1.24451 1.32401 1.31737 0.85680 0.77639 0.79214 0.80199 1.20083 1.20175 1.15920 1.21877 1.02462 0.97195 0.94154 1.20481 1.03979 0.87149 0.96157 0.93199 0.88985 0.93113 0.88606 0.88484 0.86587 0.88817 0.81634 0.88743 0.92667 0.89347 0.89244 0.91905 0.89378 0.93233 0.96143 0.92258 0.88762 0.88188 0.89029 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.03 -0.57 6.56 29.85 0.20 -0.38 16 3 C 0.21 5.95 7.40 138.48 1.02 6.98 16 4 N -0.56 -17.33 11.18 -179.30 -2.01 -19.33 16 5 C 0.27 7.67 7.72 138.36 1.07 8.74 16 6 N -0.38 -10.49 4.04 -338.34 -1.37 -11.86 16 7 N -0.34 -10.23 12.74 -51.07 -0.65 -10.88 16 8 C 0.14 3.15 6.78 86.52 0.59 3.73 16 9 C 0.08 1.83 2.27 45.07 0.10 1.93 16 10 H 0.03 0.92 7.71 -2.38 -0.02 0.90 16 11 N -0.64 -13.99 5.94 -472.49 -2.80 -16.79 16 12 C 0.07 1.74 2.00 44.17 0.09 1.82 16 13 H 0.10 2.38 6.67 -2.39 -0.02 2.37 16 14 C -0.14 -2.26 9.08 71.98 0.65 -1.61 16 15 C 0.47 17.05 6.94 87.66 0.61 17.65 16 16 O -0.59 -26.36 15.28 -3.04 -0.05 -26.40 16 17 N -0.60 -22.63 2.86 -851.13 -2.43 -25.06 16 18 C 0.07 1.87 8.79 127.77 1.12 3.00 16 19 C 0.22 10.44 4.23 85.63 0.36 10.80 16 20 C -0.54 -31.05 9.94 25.60 0.25 -30.79 16 21 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 22 C 0.01 0.55 5.47 84.66 0.46 1.02 16 23 N -0.95 -59.73 13.96 21.45 0.30 -59.44 16 24 Si 0.95 43.73 27.47 68.60 1.88 45.62 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 28 C -0.12 -2.38 5.31 30.79 0.16 -2.22 16 29 C -0.04 -0.84 6.33 30.06 0.19 -0.65 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.01 7.82 -2.38 -0.02 1.99 16 37 H 0.36 8.77 7.06 -89.69 -0.63 8.14 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.00 8.13 -2.38 -0.02 0.99 16 40 H 0.09 1.23 4.78 -2.39 -0.01 1.22 16 41 H 0.09 1.67 7.11 -2.39 -0.02 1.66 16 42 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 43 H 0.09 1.80 5.94 -2.39 -0.01 1.79 16 44 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 45 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.09 1.96 7.93 -2.38 -0.02 1.94 16 48 H 0.10 1.62 8.12 -2.39 -0.02 1.60 16 49 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 50 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -81.08 395.89 0.73 -80.35 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.26 Total: 25.19 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 7.60 Total: 18.60 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -8.96 Total: -143.36 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.62 kcal Total: -81.08 0.73 -80.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105873061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.611 kcal (2) G-P(sol) polarization free energy of solvation -81.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds