Wall clock time and date at job start Tue Mar 31 2020 20:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46816 * 2 1 4 4 N 1.33469 * 125.49751 * 90.02766 * 3 2 1 5 5 C 1.30326 * 109.72952 * 180.02562 * 4 3 2 6 6 N 1.34677 * 108.04200 * 359.92174 * 5 4 3 7 7 N 1.30973 * 125.49739 * 269.99732 * 3 2 1 8 8 C 1.46296 * 125.04935 * 180.14949 * 6 5 4 9 9 C 1.53302 * 108.77118 * 17.01951 * 8 6 5 10 10 H 1.08997 * 109.46479 * 69.86207 * 9 8 6 11 11 N 1.46906 * 109.46987 * 189.85429 * 9 8 6 12 12 C 1.46898 * 110.99988 * 275.01330 * 11 9 8 13 13 H 1.09001 * 109.47018 * 35.00136 * 12 11 9 14 14 C 1.52998 * 109.47124 * 274.99906 * 12 11 9 15 15 C 1.50696 * 109.47137 * 154.99892 * 12 11 9 16 16 O 1.21284 * 119.99978 * 14.32950 * 15 12 11 17 17 N 1.34777 * 120.00093 * 194.33427 * 15 12 11 18 18 C 1.46500 * 119.99867 * 3.59959 * 17 15 12 19 19 C 1.46496 * 120.00265 * 183.60535 * 17 15 12 20 20 C 1.50697 * 109.47324 * 89.99329 * 19 17 15 21 21 H 1.08003 * 119.99845 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00091 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00251 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99877 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47150 * 90.00221 * 24 22 20 26 26 H 1.48504 * 109.46939 * 210.00410 * 24 22 20 27 27 H 1.48497 * 109.46851 * 330.00055 * 24 22 20 28 28 C 1.53163 * 109.48311 * 309.85601 * 9 8 6 29 29 C 1.50924 * 127.90993 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46832 * 299.99783 * 1 2 3 32 32 H 1.09000 * 109.47437 * 59.99758 * 1 2 3 33 33 H 1.08993 * 109.46791 * 240.00415 * 2 1 3 34 34 H 1.08994 * 109.46842 * 119.99916 * 2 1 3 35 35 H 1.09004 * 109.58704 * 257.23200 * 8 6 5 36 36 H 1.09006 * 109.58633 * 136.80647 * 8 6 5 37 37 H 1.00904 * 110.99435 * 38.96282 * 11 9 8 38 38 H 1.09008 * 109.46894 * 56.03996 * 14 12 11 39 39 H 1.08997 * 109.47239 * 176.03356 * 14 12 11 40 40 H 1.08990 * 109.47259 * 296.03778 * 14 12 11 41 41 H 1.09004 * 109.47055 * 84.66701 * 18 17 15 42 42 H 1.08998 * 109.47307 * 204.66377 * 18 17 15 43 43 H 1.08994 * 109.47630 * 324.66556 * 18 17 15 44 44 H 1.09003 * 109.47575 * 209.99869 * 19 17 15 45 45 H 1.09004 * 109.47104 * 329.99987 * 19 17 15 46 46 H 0.96995 * 120.00429 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.50435 * 189.11545 * 28 9 8 48 48 H 1.08992 * 109.50816 * 309.25121 * 28 9 8 49 49 H 1.09001 * 109.72293 * 76.24782 * 29 5 4 50 50 H 1.09001 * 109.71717 * 315.59978 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2911 2.1514 1.0866 5 6 2.7084 3.3341 0.7325 6 7 2.7269 3.3843 -0.6132 7 7 2.2858 2.1379 -1.0663 8 6 3.1394 4.5431 -1.4052 9 6 3.9300 5.4996 -0.5051 10 1 4.8921 5.0521 -0.2560 11 7 4.1487 6.7687 -1.2119 12 6 5.3379 6.6946 -2.0712 13 1 5.4249 5.6901 -2.4852 14 6 6.5849 7.0156 -1.2450 15 6 5.2090 7.6913 -3.1942 16 8 4.3697 8.5649 -3.1363 17 7 6.0265 7.6118 -4.2628 18 6 6.9868 6.5107 -4.3701 19 6 5.9548 8.6266 -5.3170 20 6 6.9007 9.7543 -4.9939 21 1 7.4961 9.7185 -4.0935 22 6 7.0068 10.8313 -5.8483 23 7 6.2822 10.8747 -6.9448 24 14 8.1800 12.2289 -5.4481 25 1 9.5107 11.9435 -6.0420 26 1 7.6489 13.4970 -6.0095 27 1 8.3126 12.3571 -3.9746 28 6 3.1402 5.7610 0.7809 29 6 3.1134 4.4807 1.6264 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2577 5.0523 -1.7943 36 1 3.7692 4.2150 -2.2322 37 1 3.3331 7.0308 -1.7450 38 1 6.6399 6.3388 -0.3922 39 1 7.4730 6.8920 -1.8646 40 1 6.5303 8.0444 -0.8894 41 1 6.4952 5.6411 -4.8063 42 1 7.8185 6.8147 -5.0057 43 1 7.3612 6.2571 -3.3784 44 1 6.2344 8.1798 -6.2711 45 1 4.9375 9.0128 -5.3809 46 1 6.3566 11.6325 -7.5457 47 1 3.6194 6.5604 1.3462 48 1 2.1208 6.0531 0.5289 49 1 4.1039 4.2922 2.0405 50 1 2.3907 4.5895 2.4351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105873064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:19 Heat of formation + Delta-G solvation = 49.802623 kcal Electronic energy + Delta-G solvation = -29286.176094 eV Core-core repulsion = 25350.007809 eV Total energy + Delta-G solvation = -3936.168285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.57100 -39.71966 -38.07531 -35.24224 -34.89650 -33.75654 -33.25668 -32.62071 -30.65150 -30.04563 -27.96485 -27.52793 -26.09096 -25.05219 -24.04025 -23.86634 -22.59150 -21.55171 -20.47136 -19.99585 -18.53903 -17.12334 -16.73302 -16.59365 -16.45465 -16.07199 -15.29898 -15.01178 -14.89884 -14.81901 -14.60510 -14.44159 -14.18047 -14.02886 -13.78189 -13.24487 -13.00280 -12.65873 -12.62059 -12.49791 -12.18941 -12.13695 -12.07767 -11.95252 -11.89375 -11.64117 -11.50395 -11.40218 -11.27007 -11.21345 -11.19499 -10.92500 -10.62589 -10.21560 -10.20808 -9.90145 -9.69545 -9.51580 -8.98061 -8.78225 -8.49059 -7.75431 -6.09878 -4.15098 1.40056 2.01566 2.65261 3.21883 3.26492 3.33643 3.37959 3.49657 3.64010 3.89625 4.00829 4.24422 4.35632 4.39661 4.56055 4.65639 4.81569 4.85226 4.88725 4.94603 4.98698 5.12486 5.14616 5.18458 5.22975 5.24983 5.27196 5.44117 5.46909 5.53293 5.64256 5.70796 5.73587 5.75851 5.79727 5.84727 5.86307 6.08358 6.14104 6.24115 6.33402 6.51068 6.66730 6.98234 7.10875 7.35424 7.43821 7.85844 7.93321 8.16115 8.28476 8.80639 8.95927 9.50216 10.98206 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002195 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.052565 B =12755.835496 C =13229.895958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C 0.218 3.782 4 N -0.539 5.539 5 C 0.278 3.722 6 N -0.370 5.370 7 N -0.316 5.316 8 C 0.096 3.904 9 C 0.076 3.924 10 H 0.094 0.906 11 N -0.649 5.649 12 C 0.063 3.937 13 H 0.062 0.938 14 C -0.136 4.136 15 C 0.502 3.498 16 O -0.531 6.531 17 N -0.598 5.598 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.116 4.116 29 C -0.040 4.040 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.358 0.642 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.264 0.736 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -19.027 15.788 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 C -0.064 4.064 4 N -0.267 5.267 5 C 0.002 3.998 6 N -0.161 5.161 7 N -0.144 5.144 8 C -0.029 4.029 9 C -0.036 4.036 10 H 0.112 0.888 11 N -0.283 5.283 12 C -0.050 4.050 13 H 0.079 0.921 14 C -0.194 4.194 15 C 0.287 3.713 16 O -0.408 6.408 17 N -0.330 5.330 18 C -0.070 4.070 19 C 0.126 3.874 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.155 4.155 29 C -0.080 4.080 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.181 0.819 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.120 0.880 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.505 -18.408 15.626 24.766 hybrid contribution 0.517 0.445 -0.879 1.113 sum -4.988 -17.963 14.747 23.770 Atomic orbital electron populations 1.21706 0.93801 1.02282 1.02513 1.19857 0.96386 0.86510 1.03948 1.24366 0.98369 0.98112 0.85574 1.70162 1.22978 1.02750 1.30832 1.24373 0.96267 0.95179 0.83981 1.50126 1.49111 1.10964 1.05867 1.77950 1.22602 0.91191 1.22641 1.22920 1.00762 0.83553 0.95650 1.22066 0.98935 0.88601 0.94025 0.88789 1.60565 1.07224 1.26723 1.33775 1.21602 0.92814 0.97918 0.92685 0.92066 1.21788 0.94935 1.03426 0.99282 1.20189 0.82242 0.85928 0.82911 1.90687 1.35700 1.35959 1.78409 1.48127 1.35431 1.27074 1.22355 1.21831 0.93712 0.89466 1.01948 1.19329 0.98898 0.85143 0.84061 1.21408 1.23472 1.04202 1.07554 0.92398 1.24947 0.96079 0.98177 0.94936 1.69924 1.40040 1.31287 1.12031 0.86484 0.80679 0.81531 0.78667 1.20634 1.21056 1.19839 1.21754 1.01584 0.97085 0.95027 1.20430 1.03756 0.87870 0.95954 0.91505 0.92194 0.92485 0.89663 0.89173 0.89140 0.88824 0.81899 0.92113 0.91292 0.90983 0.93880 0.90361 0.91978 0.94967 0.93748 0.92656 0.88009 0.90760 0.88083 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.90 37.16 0.37 -0.71 16 2 C -0.03 -0.23 6.56 -27.88 -0.18 -0.42 16 3 C 0.22 2.69 7.40 -156.43 -1.16 1.53 16 4 N -0.54 -6.82 11.18 -8.03 -0.09 -6.91 16 5 C 0.28 3.09 7.72 -155.78 -1.20 1.89 16 6 N -0.37 -4.41 4.04 -58.29 -0.24 -4.65 16 7 N -0.32 -4.30 12.74 32.50 0.41 -3.89 16 8 C 0.10 0.96 6.56 -4.00 -0.03 0.94 16 9 C 0.08 0.68 2.29 -67.47 -0.15 0.52 16 10 H 0.09 0.80 7.08 -51.93 -0.37 0.43 16 11 N -0.65 -7.68 5.86 -100.70 -0.59 -8.27 16 12 C 0.06 0.83 2.01 -68.87 -0.14 0.70 16 13 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 14 C -0.14 -1.65 9.15 37.16 0.34 -1.31 16 15 C 0.50 9.65 6.85 -10.99 -0.08 9.57 16 16 O -0.53 -12.48 15.47 5.55 0.09 -12.40 16 17 N -0.60 -11.98 2.86 -182.96 -0.52 -12.51 16 18 C 0.07 1.10 9.85 59.85 0.59 1.69 16 19 C 0.24 6.22 5.16 -5.20 -0.03 6.19 16 20 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 21 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 24 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 C -0.12 -0.86 5.57 -26.41 -0.15 -1.01 16 29 C -0.04 -0.29 6.33 -27.54 -0.17 -0.46 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 36 H 0.09 0.95 7.61 -51.93 -0.39 0.56 16 37 H 0.36 4.71 7.32 -39.29 -0.29 4.42 16 38 H 0.06 0.58 7.38 -51.92 -0.38 0.19 16 39 H 0.07 0.81 5.84 -51.93 -0.30 0.51 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 43 H 0.06 0.75 4.59 -51.93 -0.24 0.51 16 44 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 45 H 0.04 1.28 7.38 -51.93 -0.38 0.89 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 49 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -34.82 399.94 -9.75 -44.57 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.14 Total: 1.18 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.41 Total: 5.82 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.29 Total: -61.69 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.82 -9.75 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105873064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.368 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds