Wall clock time and date at job start Tue Mar 31 2020 20:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46816 * 2 1 4 4 N 1.33469 * 125.49751 * 90.02766 * 3 2 1 5 5 C 1.30326 * 109.72952 * 180.02562 * 4 3 2 6 6 N 1.34677 * 108.04200 * 359.92174 * 5 4 3 7 7 N 1.30973 * 125.49739 * 269.99732 * 3 2 1 8 8 C 1.46296 * 125.04935 * 180.14949 * 6 5 4 9 9 C 1.53302 * 108.77118 * 17.01951 * 8 6 5 10 10 H 1.08997 * 109.46479 * 69.86207 * 9 8 6 11 11 N 1.46906 * 109.46987 * 189.85429 * 9 8 6 12 12 C 1.46898 * 110.99988 * 275.01330 * 11 9 8 13 13 H 1.09001 * 109.47018 * 35.00136 * 12 11 9 14 14 C 1.52998 * 109.47124 * 274.99906 * 12 11 9 15 15 C 1.50696 * 109.47137 * 154.99892 * 12 11 9 16 16 O 1.21284 * 119.99978 * 14.32950 * 15 12 11 17 17 N 1.34777 * 120.00093 * 194.33427 * 15 12 11 18 18 C 1.46500 * 119.99867 * 3.59959 * 17 15 12 19 19 C 1.46496 * 120.00265 * 183.60535 * 17 15 12 20 20 C 1.50697 * 109.47324 * 89.99329 * 19 17 15 21 21 H 1.08003 * 119.99845 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00091 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00251 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99877 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47150 * 90.00221 * 24 22 20 26 26 H 1.48504 * 109.46939 * 210.00410 * 24 22 20 27 27 H 1.48497 * 109.46851 * 330.00055 * 24 22 20 28 28 C 1.53163 * 109.48311 * 309.85601 * 9 8 6 29 29 C 1.50924 * 127.90993 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46832 * 299.99783 * 1 2 3 32 32 H 1.09000 * 109.47437 * 59.99758 * 1 2 3 33 33 H 1.08993 * 109.46791 * 240.00415 * 2 1 3 34 34 H 1.08994 * 109.46842 * 119.99916 * 2 1 3 35 35 H 1.09004 * 109.58704 * 257.23200 * 8 6 5 36 36 H 1.09006 * 109.58633 * 136.80647 * 8 6 5 37 37 H 1.00904 * 110.99435 * 38.96282 * 11 9 8 38 38 H 1.09008 * 109.46894 * 56.03996 * 14 12 11 39 39 H 1.08997 * 109.47239 * 176.03356 * 14 12 11 40 40 H 1.08990 * 109.47259 * 296.03778 * 14 12 11 41 41 H 1.09004 * 109.47055 * 84.66701 * 18 17 15 42 42 H 1.08998 * 109.47307 * 204.66377 * 18 17 15 43 43 H 1.08994 * 109.47630 * 324.66556 * 18 17 15 44 44 H 1.09003 * 109.47575 * 209.99869 * 19 17 15 45 45 H 1.09004 * 109.47104 * 329.99987 * 19 17 15 46 46 H 0.96995 * 120.00429 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.50435 * 189.11545 * 28 9 8 48 48 H 1.08992 * 109.50816 * 309.25121 * 28 9 8 49 49 H 1.09001 * 109.72293 * 76.24782 * 29 5 4 50 50 H 1.09001 * 109.71717 * 315.59978 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2911 2.1514 1.0866 5 6 2.7084 3.3341 0.7325 6 7 2.7269 3.3843 -0.6132 7 7 2.2858 2.1379 -1.0663 8 6 3.1394 4.5431 -1.4052 9 6 3.9300 5.4996 -0.5051 10 1 4.8921 5.0521 -0.2560 11 7 4.1487 6.7687 -1.2119 12 6 5.3379 6.6946 -2.0712 13 1 5.4249 5.6901 -2.4852 14 6 6.5849 7.0156 -1.2450 15 6 5.2090 7.6913 -3.1942 16 8 4.3697 8.5649 -3.1363 17 7 6.0265 7.6118 -4.2628 18 6 6.9868 6.5107 -4.3701 19 6 5.9548 8.6266 -5.3170 20 6 6.9007 9.7543 -4.9939 21 1 7.4961 9.7185 -4.0935 22 6 7.0068 10.8313 -5.8483 23 7 6.2822 10.8747 -6.9448 24 14 8.1800 12.2289 -5.4481 25 1 9.5107 11.9435 -6.0420 26 1 7.6489 13.4970 -6.0095 27 1 8.3126 12.3571 -3.9746 28 6 3.1402 5.7610 0.7809 29 6 3.1134 4.4807 1.6264 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2577 5.0523 -1.7943 36 1 3.7692 4.2150 -2.2322 37 1 3.3331 7.0308 -1.7450 38 1 6.6399 6.3388 -0.3922 39 1 7.4730 6.8920 -1.8646 40 1 6.5303 8.0444 -0.8894 41 1 6.4952 5.6411 -4.8063 42 1 7.8185 6.8147 -5.0057 43 1 7.3612 6.2571 -3.3784 44 1 6.2344 8.1798 -6.2711 45 1 4.9375 9.0128 -5.3809 46 1 6.3566 11.6325 -7.5457 47 1 3.6194 6.5604 1.3462 48 1 2.1208 6.0531 0.5289 49 1 4.1039 4.2922 2.0405 50 1 2.3907 4.5895 2.4351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105873064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:18 Heat of formation + Delta-G solvation = 25.948816 kcal Electronic energy + Delta-G solvation = -29287.210472 eV Core-core repulsion = 25350.007809 eV Total energy + Delta-G solvation = -3937.202663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.41001 -41.08287 -39.05434 -36.68656 -36.08741 -34.80087 -34.41079 -34.00176 -31.66434 -30.84843 -29.68051 -28.49225 -27.48971 -25.99808 -25.35125 -24.75087 -23.70630 -22.70361 -21.28134 -20.81828 -19.89364 -18.68642 -18.15589 -17.83764 -17.46185 -17.23684 -16.63608 -16.24163 -16.03972 -15.81999 -15.56267 -15.42664 -15.26849 -14.88426 -14.68935 -14.44464 -14.12558 -13.98528 -13.65536 -13.55532 -13.50265 -13.28114 -13.20072 -12.99604 -12.92014 -12.83948 -12.58588 -12.55748 -12.49027 -12.36440 -12.19467 -12.05137 -12.01959 -11.90165 -11.70918 -11.10040 -10.77010 -10.65448 -10.53798 -10.35793 -9.70964 -9.44454 -8.23672 -6.38515 0.55593 1.21034 1.36372 1.39281 1.49429 1.74544 1.80409 2.20827 2.39662 2.90419 2.94233 3.06173 3.14715 3.49626 3.58002 3.64405 3.83764 3.95794 4.00250 4.13501 4.18106 4.28530 4.31886 4.35463 4.36626 4.49466 4.55397 4.57125 4.63437 4.75941 4.84681 4.87678 4.94422 4.97469 4.97960 5.05560 5.10639 5.17513 5.20900 5.22820 5.33371 5.35132 5.43890 5.52858 5.68495 5.80187 5.86941 6.03869 6.09697 6.67905 6.75322 7.07202 7.25953 7.42241 8.83353 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002195 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.052565 B =12755.835496 C =13229.895958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C 0.211 3.789 4 N -0.562 5.562 5 C 0.277 3.723 6 N -0.378 5.378 7 N -0.353 5.353 8 C 0.096 3.904 9 C 0.085 3.915 10 H 0.110 0.890 11 N -0.654 5.654 12 C 0.078 3.922 13 H 0.090 0.910 14 C -0.133 4.133 15 C 0.492 3.508 16 O -0.585 6.585 17 N -0.606 5.606 18 C 0.069 3.931 19 C 0.259 3.741 20 C -0.540 4.540 21 H 0.056 0.944 22 C 0.006 3.994 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.264 1.264 26 H -0.283 1.283 27 H -0.271 1.271 28 C -0.109 4.109 29 C -0.033 4.033 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.349 0.651 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.022 0.978 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.114 0.886 48 H 0.067 0.933 49 H 0.124 0.876 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -20.337 18.102 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.071 4.071 4 N -0.291 5.291 5 C 0.001 3.999 6 N -0.168 5.168 7 N -0.182 5.182 8 C -0.028 4.028 9 C -0.026 4.026 10 H 0.128 0.872 11 N -0.286 5.286 12 C -0.034 4.034 13 H 0.107 0.893 14 C -0.191 4.191 15 C 0.280 3.720 16 O -0.465 6.465 17 N -0.338 5.338 18 C -0.073 4.073 19 C 0.137 3.863 20 C -0.579 4.579 21 H 0.074 0.926 22 C -0.193 4.193 23 N -0.569 5.569 24 Si 0.792 3.208 25 H -0.189 1.189 26 H -0.208 1.208 27 H -0.195 1.195 28 C -0.147 4.147 29 C -0.073 4.073 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.171 0.829 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.040 0.960 45 H 0.016 0.984 46 H 0.076 0.924 47 H 0.133 0.867 48 H 0.085 0.915 49 H 0.142 0.858 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.857 -19.766 17.953 26.979 hybrid contribution -0.052 0.805 -1.602 1.794 sum -3.909 -18.961 16.351 25.341 Atomic orbital electron populations 1.21660 0.93046 1.03547 1.01374 1.20040 0.96939 0.84881 1.04948 1.25030 0.97560 0.99229 0.85272 1.70196 1.24061 1.03605 1.31214 1.25140 0.94973 0.95665 0.84111 1.50196 1.49430 1.10835 1.06383 1.77885 1.24152 0.92267 1.23865 1.22963 1.00681 0.83327 0.95860 1.22111 0.99738 0.86940 0.93845 0.87173 1.60638 1.06352 1.28416 1.33244 1.21544 0.94182 0.96907 0.90814 0.89265 1.21809 0.94071 1.02882 1.00313 1.21293 0.80768 0.86340 0.83552 1.90652 1.37774 1.38573 1.79515 1.48126 1.36887 1.27234 1.21515 1.22116 0.92646 0.88322 1.04193 1.18769 0.95731 0.86255 0.85529 1.21690 1.23646 1.05159 1.07397 0.92579 1.25882 0.97795 1.00906 0.94747 1.70049 1.41557 1.32227 1.13046 0.85406 0.78935 0.77969 0.78464 1.18863 1.20836 1.19546 1.21712 1.01078 0.97618 0.94336 1.20619 1.05328 0.85922 0.95410 0.89031 0.93009 0.93846 0.88859 0.87889 0.89811 0.88988 0.82925 0.88442 0.90765 0.93419 0.91349 0.91175 0.88517 0.96037 0.98364 0.92445 0.86723 0.91463 0.85813 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.90 71.98 0.71 -1.22 16 2 C -0.03 -0.46 6.56 29.85 0.20 -0.26 16 3 C 0.21 5.06 7.40 138.48 1.02 6.08 16 4 N -0.56 -13.51 11.18 -179.32 -2.01 -15.52 16 5 C 0.28 5.67 7.72 138.37 1.07 6.73 16 6 N -0.38 -8.61 4.04 -338.34 -1.37 -9.97 16 7 N -0.35 -9.49 12.74 -51.08 -0.65 -10.14 16 8 C 0.10 1.82 6.56 86.52 0.57 2.38 16 9 C 0.09 1.31 2.29 45.07 0.10 1.41 16 10 H 0.11 1.40 7.08 -2.39 -0.02 1.38 16 11 N -0.65 -14.47 5.86 -472.51 -2.77 -17.24 16 12 C 0.08 1.92 2.01 44.17 0.09 2.01 16 13 H 0.09 1.73 6.55 -2.39 -0.02 1.71 16 14 C -0.13 -2.81 9.15 71.98 0.66 -2.15 16 15 C 0.49 19.04 6.85 87.66 0.60 19.65 16 16 O -0.58 -28.65 15.47 -3.04 -0.05 -28.70 16 17 N -0.61 -24.50 2.86 -851.15 -2.43 -26.93 16 18 C 0.07 1.93 9.85 127.77 1.26 3.19 16 19 C 0.26 13.70 5.16 85.63 0.44 14.15 16 20 C -0.54 -30.54 9.39 25.60 0.24 -30.30 16 21 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 22 C 0.01 0.32 5.46 84.66 0.46 0.78 16 23 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 24 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C -0.11 -1.33 5.57 30.80 0.17 -1.16 16 29 C -0.03 -0.37 6.33 30.07 0.19 -0.18 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.68 7.95 -2.38 -0.02 1.66 16 36 H 0.09 1.75 7.61 -2.38 -0.02 1.73 16 37 H 0.35 9.16 7.32 -89.69 -0.66 8.50 16 38 H 0.10 1.38 7.38 -2.38 -0.02 1.36 16 39 H 0.07 1.49 5.84 -2.39 -0.01 1.47 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 43 H 0.10 2.02 4.59 -2.39 -0.01 2.01 16 44 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 45 H 0.00 -0.11 7.38 -2.39 -0.02 -0.13 16 46 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 49 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -79.83 399.94 1.11 -78.72 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.29 Total: 17.91 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 7.78 Total: 21.11 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -8.94 Total: -135.39 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -79.83 1.11 -78.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105873064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.664 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds