Wall clock time and date at job start Tue Mar 31 2020 20:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46912 * 2 1 4 4 N 1.31794 * 119.04200 * 269.72805 * 3 2 1 5 5 C 1.32272 * 120.89337 * 179.71632 * 4 3 2 6 6 C 1.39226 * 119.01329 * 0.54962 * 5 4 3 7 7 N 1.40000 * 120.87010 * 179.70682 * 6 5 4 8 8 C 1.34783 * 119.99622 * 32.41973 * 7 6 5 9 9 O 1.21587 * 119.99920 * 5.28218 * 8 7 6 10 10 N 1.34779 * 119.99598 * 185.28508 * 8 7 6 11 11 C 1.46491 * 120.00265 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47288 * 90.00270 * 11 10 8 13 13 H 1.07999 * 119.99851 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00022 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46655 * 60.00338 * 16 14 12 18 18 H 1.48499 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47375 * 300.00727 * 16 14 12 20 20 C 1.46507 * 119.99686 * 180.02562 * 10 8 7 21 21 C 1.52998 * 109.47088 * 89.99527 * 20 10 8 22 22 C 1.52999 * 109.46664 * 180.02562 * 21 20 10 23 23 N 1.46905 * 109.46988 * 179.97438 * 22 21 20 24 24 C 1.46905 * 110.99860 * 169.99625 * 23 22 21 25 25 C 1.46895 * 110.99984 * 293.95357 * 23 22 21 26 26 C 1.39224 * 118.25963 * 359.73133 * 6 5 4 27 27 N 1.31794 * 119.03747 * 90.00393 * 3 2 1 28 28 H 1.09005 * 109.47002 * 60.00148 * 1 2 3 29 29 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46984 * 299.99820 * 1 2 3 31 31 H 1.08997 * 109.47239 * 240.00631 * 2 1 3 32 32 H 1.08995 * 109.47302 * 120.00272 * 2 1 3 33 33 H 1.07998 * 120.49363 * 180.29701 * 5 4 3 34 34 H 0.96994 * 120.00183 * 212.42309 * 7 6 5 35 35 H 1.09002 * 109.47499 * 210.00593 * 11 10 8 36 36 H 1.09010 * 109.47410 * 330.00285 * 11 10 8 37 37 H 0.96996 * 120.00241 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.46474 * 209.99614 * 20 10 8 39 39 H 1.09008 * 109.46579 * 329.99242 * 20 10 8 40 40 H 1.08994 * 109.47378 * 299.99965 * 21 20 10 41 41 H 1.08997 * 109.47196 * 60.00115 * 21 20 10 42 42 H 1.09003 * 109.47257 * 299.99769 * 22 21 20 43 43 H 1.08997 * 109.47274 * 60.00097 * 22 21 20 44 44 H 1.09002 * 109.46807 * 60.00079 * 24 23 22 45 45 H 1.08999 * 109.46834 * 180.02562 * 24 23 22 46 46 H 1.08990 * 109.47317 * 300.00130 * 24 23 22 47 47 H 1.09002 * 109.47058 * 59.99615 * 25 23 22 48 48 H 1.08999 * 109.47049 * 179.97438 * 25 23 22 49 49 H 1.09000 * 109.47351 * 299.99905 * 25 23 22 50 50 H 1.08003 * 120.49005 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2507 2.0222 -1.1522 5 6 2.6862 3.2705 -1.1950 6 6 2.9243 3.9439 0.0001 7 7 3.3914 5.2637 0.0002 8 6 3.0265 6.1077 -0.9853 9 8 2.2169 5.7534 -1.8204 10 7 3.5591 7.3444 -1.0449 11 6 4.5341 7.7713 -0.0384 12 6 5.9239 7.4241 -0.5062 13 1 6.0666 6.9347 -1.4583 14 6 7.0133 7.7321 0.2807 15 7 6.8396 8.3285 1.4399 16 14 8.7360 7.3010 -0.2989 17 1 9.0138 7.9933 -1.5831 18 1 9.7244 7.7340 0.7213 19 1 8.8392 5.8327 -0.4957 20 6 3.1620 8.2620 -2.1157 21 6 1.9528 9.0824 -1.6621 22 6 1.5379 10.0402 -2.7807 23 7 0.3765 10.8275 -2.3454 24 6 0.0951 11.9169 -3.2899 25 6 -0.8025 9.9703 -2.1640 26 6 2.6862 3.2703 1.1950 27 7 2.2456 2.0239 1.1523 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.8585 3.7586 -2.1428 34 1 3.9777 5.5706 0.7093 35 1 4.4582 8.8490 0.1068 36 1 4.3302 7.2626 0.9039 37 1 7.6060 8.5456 1.9933 38 1 3.9903 8.9322 -2.3455 39 1 2.8998 7.6899 -3.0058 40 1 1.1246 8.4122 -1.4322 41 1 2.2151 9.6544 -0.7721 42 1 2.3660 10.7105 -3.0109 43 1 1.2755 9.4679 -3.6704 44 1 -0.1151 11.4990 -4.2744 45 1 -0.7689 12.4840 -2.9435 46 1 0.9607 12.5763 -3.3524 47 1 -0.5894 9.2145 -1.4080 48 1 -1.6476 10.5783 -1.8412 49 1 -1.0453 9.4818 -3.1077 50 1 2.8592 3.7582 2.1430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119034190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:23 Heat of formation + Delta-G solvation = 20.421181 kcal Electronic energy + Delta-G solvation = -29126.734980 eV Core-core repulsion = 25189.292621 eV Total energy + Delta-G solvation = -3937.442360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.11681 -39.65420 -37.70457 -35.81925 -35.02523 -33.47618 -33.46528 -32.90114 -31.55624 -29.13049 -27.65527 -27.53805 -25.99307 -24.63405 -24.42903 -23.16316 -22.69287 -21.63346 -20.69936 -19.67479 -18.12892 -17.09630 -16.92780 -16.56065 -16.42839 -15.60674 -15.48135 -15.14482 -14.86792 -14.63394 -14.45702 -14.31774 -14.06554 -13.85950 -13.70241 -13.30712 -13.09632 -12.67677 -12.43120 -12.36884 -12.23615 -11.87691 -11.86563 -11.78497 -11.51228 -11.45603 -11.28501 -11.12173 -11.09906 -10.98225 -10.85648 -10.62703 -10.59852 -10.34271 -10.20013 -9.91481 -9.67927 -9.02378 -8.69464 -8.38102 -8.21390 -7.75968 -6.31287 -4.40466 1.08907 1.28654 3.01920 3.16980 3.22781 3.25698 3.53282 3.93260 4.01438 4.11240 4.20887 4.36443 4.42502 4.76732 5.01971 5.04594 5.11355 5.12884 5.15710 5.23680 5.24343 5.29072 5.34476 5.50969 5.59847 5.63093 5.64468 5.72097 5.76473 5.79799 5.83994 5.89775 5.95444 6.09066 6.11088 6.15135 6.35855 6.38989 6.50533 6.61773 6.83120 6.93966 6.99907 7.03707 7.11692 7.23254 7.54066 7.63269 7.88380 8.29215 8.33033 8.68075 8.98922 9.29359 10.74810 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006381 B = 0.004004 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4386.686183 B = 6990.972751 C =10721.513741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.276 3.724 4 N -0.498 5.498 5 C 0.144 3.856 6 C 0.086 3.914 7 N -0.670 5.670 8 C 0.708 3.292 9 O -0.604 6.604 10 N -0.602 5.602 11 C 0.239 3.761 12 C -0.545 4.545 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.139 3.861 21 C -0.131 4.131 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.022 3.978 26 C 0.111 3.889 27 N -0.496 5.496 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.179 0.821 34 H 0.422 0.578 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.268 0.732 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.024 0.976 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -3.548 -3.435 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C 0.007 3.993 4 N -0.211 5.211 5 C -0.025 4.025 6 C -0.017 4.017 7 N -0.320 5.320 8 C 0.410 3.590 9 O -0.484 6.484 10 N -0.334 5.334 11 C 0.119 3.881 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.015 3.985 21 C -0.170 4.170 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.058 4.058 27 N -0.210 5.210 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.196 0.804 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.042 0.958 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.466 -4.300 -3.419 12.714 hybrid contribution 1.582 0.808 -0.544 1.858 sum -9.885 -3.492 -3.963 11.207 Atomic orbital electron populations 1.21690 0.94046 1.02004 1.02405 1.20217 0.96419 0.88373 1.03705 1.23011 0.94998 0.97556 0.83698 1.68235 1.12873 1.09827 1.30210 1.23441 0.92136 0.88349 0.98590 1.19400 0.99384 0.86427 0.96464 1.42748 1.51639 1.07988 1.29595 1.15806 0.80775 0.81191 0.81224 1.90837 1.38321 1.77236 1.42038 1.47400 1.43804 1.11357 1.30875 1.19392 0.86083 0.97072 0.85545 1.21458 0.90714 1.40617 1.05569 0.91982 1.24940 0.99474 0.94512 0.94693 1.69898 1.31614 1.40207 1.10910 0.86551 0.83324 0.79018 0.78590 1.20023 1.21062 1.20117 1.21148 0.96268 0.91497 0.89627 1.21978 0.98578 0.97523 0.98897 1.22073 0.92916 0.95482 0.96472 1.61969 1.05310 1.12379 1.47528 1.22369 1.01936 0.94426 0.93607 1.22422 0.92535 0.97085 1.00553 1.23013 0.94714 0.90773 0.97295 1.68120 1.13030 1.09388 1.30449 0.92382 0.91825 0.92427 0.89568 0.89597 0.80427 0.73716 0.93839 0.95329 0.92265 0.90020 0.90907 0.91851 0.90844 0.90555 0.94768 0.95876 0.91622 0.91328 0.90913 0.91766 0.95751 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.05 -0.55 6.37 -27.88 -0.18 -0.72 16 3 C 0.28 4.19 6.89 -157.19 -1.08 3.11 16 4 N -0.50 -8.34 10.32 -10.58 -0.11 -8.45 16 5 C 0.14 2.54 9.94 -17.00 -0.17 2.37 16 6 C 0.09 1.45 6.34 -83.39 -0.53 0.92 16 7 N -0.67 -11.93 5.25 -14.03 -0.07 -12.01 16 8 C 0.71 13.88 8.05 -86.91 -0.70 13.18 16 9 O -0.60 -12.66 13.62 5.29 0.07 -12.59 16 10 N -0.60 -11.65 2.46 -180.80 -0.44 -12.10 16 11 C 0.24 5.18 4.97 -5.20 -0.03 5.16 16 12 C -0.55 -13.23 9.39 -34.44 -0.32 -13.55 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -23.12 13.29 55.43 0.74 -22.38 16 16 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.14 2.35 5.41 -4.04 -0.02 2.33 16 21 C -0.13 -1.98 5.46 -26.73 -0.15 -2.12 16 22 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 23 N -0.55 -6.91 5.02 -251.26 -1.26 -8.17 16 24 C 0.03 0.25 9.57 60.07 0.57 0.83 16 25 C 0.02 0.26 9.32 60.06 0.56 0.82 16 26 C 0.11 1.69 11.26 -17.00 -0.19 1.49 16 27 N -0.50 -7.67 10.32 -10.58 -0.11 -7.78 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.18 3.27 6.46 -52.49 -0.34 2.94 16 34 H 0.42 7.41 6.52 -40.82 -0.27 7.14 16 35 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.03 0.63 6.29 -51.92 -0.33 0.30 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.07 1.24 7.42 -51.92 -0.39 0.86 16 40 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 43 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.07 0.92 6.47 -51.93 -0.34 0.58 16 48 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 49 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.17 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -28.19 410.13 -10.30 -38.48 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.29 Total: 8.94 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -1.98 Total: 15.08 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.26 Total: -70.88 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -28.19 -10.30 -38.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119034190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.903 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds