Wall clock time and date at job start Tue Mar 31 2020 20:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46912 * 2 1 4 4 N 1.31794 * 119.04200 * 269.72805 * 3 2 1 5 5 C 1.32272 * 120.89337 * 179.71632 * 4 3 2 6 6 C 1.39226 * 119.01329 * 0.54962 * 5 4 3 7 7 N 1.40000 * 120.87010 * 179.70682 * 6 5 4 8 8 C 1.34783 * 119.99622 * 32.41973 * 7 6 5 9 9 O 1.21587 * 119.99920 * 5.28218 * 8 7 6 10 10 N 1.34779 * 119.99598 * 185.28508 * 8 7 6 11 11 C 1.46491 * 120.00265 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47288 * 90.00270 * 11 10 8 13 13 H 1.07999 * 119.99851 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00022 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46655 * 60.00338 * 16 14 12 18 18 H 1.48499 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47375 * 300.00727 * 16 14 12 20 20 C 1.46507 * 119.99686 * 180.02562 * 10 8 7 21 21 C 1.52998 * 109.47088 * 89.99527 * 20 10 8 22 22 C 1.52999 * 109.46664 * 180.02562 * 21 20 10 23 23 N 1.46905 * 109.46988 * 179.97438 * 22 21 20 24 24 C 1.46905 * 110.99860 * 169.99625 * 23 22 21 25 25 C 1.46895 * 110.99984 * 293.95357 * 23 22 21 26 26 C 1.39224 * 118.25963 * 359.73133 * 6 5 4 27 27 N 1.31794 * 119.03747 * 90.00393 * 3 2 1 28 28 H 1.09005 * 109.47002 * 60.00148 * 1 2 3 29 29 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46984 * 299.99820 * 1 2 3 31 31 H 1.08997 * 109.47239 * 240.00631 * 2 1 3 32 32 H 1.08995 * 109.47302 * 120.00272 * 2 1 3 33 33 H 1.07998 * 120.49363 * 180.29701 * 5 4 3 34 34 H 0.96994 * 120.00183 * 212.42309 * 7 6 5 35 35 H 1.09002 * 109.47499 * 210.00593 * 11 10 8 36 36 H 1.09010 * 109.47410 * 330.00285 * 11 10 8 37 37 H 0.96996 * 120.00241 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.46474 * 209.99614 * 20 10 8 39 39 H 1.09008 * 109.46579 * 329.99242 * 20 10 8 40 40 H 1.08994 * 109.47378 * 299.99965 * 21 20 10 41 41 H 1.08997 * 109.47196 * 60.00115 * 21 20 10 42 42 H 1.09003 * 109.47257 * 299.99769 * 22 21 20 43 43 H 1.08997 * 109.47274 * 60.00097 * 22 21 20 44 44 H 1.09002 * 109.46807 * 60.00079 * 24 23 22 45 45 H 1.08999 * 109.46834 * 180.02562 * 24 23 22 46 46 H 1.08990 * 109.47317 * 300.00130 * 24 23 22 47 47 H 1.09002 * 109.47058 * 59.99615 * 25 23 22 48 48 H 1.08999 * 109.47049 * 179.97438 * 25 23 22 49 49 H 1.09000 * 109.47351 * 299.99905 * 25 23 22 50 50 H 1.08003 * 120.49005 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2507 2.0222 -1.1522 5 6 2.6862 3.2705 -1.1950 6 6 2.9243 3.9439 0.0001 7 7 3.3914 5.2637 0.0002 8 6 3.0265 6.1077 -0.9853 9 8 2.2169 5.7534 -1.8204 10 7 3.5591 7.3444 -1.0449 11 6 4.5341 7.7713 -0.0384 12 6 5.9239 7.4241 -0.5062 13 1 6.0666 6.9347 -1.4583 14 6 7.0133 7.7321 0.2807 15 7 6.8396 8.3285 1.4399 16 14 8.7360 7.3010 -0.2989 17 1 9.0138 7.9933 -1.5831 18 1 9.7244 7.7340 0.7213 19 1 8.8392 5.8327 -0.4957 20 6 3.1620 8.2620 -2.1157 21 6 1.9528 9.0824 -1.6621 22 6 1.5379 10.0402 -2.7807 23 7 0.3765 10.8275 -2.3454 24 6 0.0951 11.9169 -3.2899 25 6 -0.8025 9.9703 -2.1640 26 6 2.6862 3.2703 1.1950 27 7 2.2456 2.0239 1.1523 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.8585 3.7586 -2.1428 34 1 3.9777 5.5706 0.7093 35 1 4.4582 8.8490 0.1068 36 1 4.3302 7.2626 0.9039 37 1 7.6060 8.5456 1.9933 38 1 3.9903 8.9322 -2.3455 39 1 2.8998 7.6899 -3.0058 40 1 1.1246 8.4122 -1.4322 41 1 2.2151 9.6544 -0.7721 42 1 2.3660 10.7105 -3.0109 43 1 1.2755 9.4679 -3.6704 44 1 -0.1151 11.4990 -4.2744 45 1 -0.7689 12.4840 -2.9435 46 1 0.9607 12.5763 -3.3524 47 1 -0.5894 9.2145 -1.4080 48 1 -1.6476 10.5783 -1.8412 49 1 -1.0453 9.4818 -3.1077 50 1 2.8592 3.7582 2.1430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119034190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:22 Heat of formation + Delta-G solvation = 3.848737 kcal Electronic energy + Delta-G solvation = -29127.453615 eV Core-core repulsion = 25189.292621 eV Total energy + Delta-G solvation = -3938.160995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.43507 -41.11803 -38.74882 -37.21730 -36.53041 -34.81630 -34.72199 -34.45105 -32.88127 -30.35562 -29.28533 -28.50630 -27.23035 -25.89434 -25.60197 -24.91937 -23.82719 -22.75322 -21.80745 -21.14224 -19.57594 -18.71937 -18.44276 -18.03185 -17.74379 -16.77363 -16.62860 -16.47420 -16.39667 -16.04439 -15.72108 -15.51506 -15.08199 -15.01889 -14.78078 -14.61818 -14.49003 -14.36392 -13.61979 -13.52821 -13.32819 -13.28058 -12.94611 -12.93414 -12.87204 -12.68042 -12.58310 -12.44719 -12.37793 -12.18176 -12.01939 -12.00604 -11.94746 -11.85345 -11.74442 -11.51419 -11.26553 -10.62304 -10.30348 -9.72366 -9.33211 -9.23442 -8.22514 -6.37330 -0.18212 -0.01021 1.41449 1.43852 1.49622 1.59089 2.02617 2.38226 2.71349 2.81998 3.01790 3.07549 3.08527 3.14520 3.47991 3.83941 3.94805 4.09545 4.11553 4.21803 4.32032 4.39637 4.41653 4.42958 4.48412 4.61736 4.64878 4.66337 4.73361 4.74365 4.80846 4.84970 4.97793 5.01150 5.02761 5.08730 5.10351 5.14530 5.15615 5.28856 5.34010 5.50922 5.54623 5.70941 5.92030 5.99126 6.01513 6.04744 6.11434 6.62241 6.87813 7.04301 7.33702 7.46119 8.81952 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006381 B = 0.004004 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4386.686183 B = 6990.972751 C =10721.513741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.274 3.726 4 N -0.511 5.511 5 C 0.133 3.867 6 C 0.066 3.934 7 N -0.666 5.666 8 C 0.705 3.295 9 O -0.620 6.620 10 N -0.604 5.604 11 C 0.254 3.746 12 C -0.549 4.549 13 H 0.051 0.949 14 C 0.029 3.971 15 N -0.913 5.913 16 Si 0.951 3.049 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.276 1.276 20 C 0.138 3.862 21 C -0.115 4.115 22 C 0.065 3.935 23 N -0.564 5.564 24 C 0.025 3.975 25 C 0.024 3.976 26 C 0.124 3.876 27 N -0.501 5.501 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.163 0.837 34 H 0.423 0.577 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.026 0.974 50 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -4.204 -3.310 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C 0.006 3.994 4 N -0.225 5.225 5 C -0.035 4.035 6 C -0.035 4.035 7 N -0.315 5.315 8 C 0.407 3.593 9 O -0.502 6.502 10 N -0.337 5.337 11 C 0.134 3.866 12 C -0.588 4.588 13 H 0.070 0.930 14 C -0.172 4.172 15 N -0.552 5.552 16 Si 0.777 3.223 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.202 1.202 20 C 0.014 3.986 21 C -0.154 4.154 22 C -0.063 4.063 23 N -0.288 5.288 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.046 4.046 27 N -0.214 5.214 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.180 0.820 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.099 0.901 49 H 0.044 0.956 50 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.837 -4.968 -3.309 13.257 hybrid contribution 1.631 0.944 -0.577 1.971 sum -10.206 -4.024 -3.886 11.638 Atomic orbital electron populations 1.21663 0.92921 1.03610 1.01398 1.20426 0.97226 0.86058 1.05050 1.23848 0.93474 0.98915 0.83173 1.68281 1.13572 1.09497 1.31138 1.23289 0.92827 0.89003 0.98418 1.19483 1.00873 0.86142 0.97019 1.42614 1.51607 1.08206 1.29086 1.15911 0.80673 0.81281 0.81437 1.90821 1.39078 1.77488 1.42803 1.47391 1.43502 1.11791 1.30979 1.19057 0.85611 0.96001 0.85978 1.21619 0.91997 1.40129 1.05035 0.93027 1.25532 1.02348 0.94521 0.94799 1.69973 1.32403 1.41133 1.11702 0.85718 0.79910 0.78532 0.78155 1.19848 1.20719 1.20194 1.21259 0.97029 0.91285 0.88989 1.21779 0.97146 0.97224 0.99219 1.21975 0.93694 0.95276 0.95401 1.61962 1.05360 1.12891 1.48631 1.22428 1.02782 0.93710 0.93374 1.22412 0.92812 0.97014 1.00203 1.23466 0.92851 0.90529 0.97707 1.68270 1.13334 1.09380 1.30417 0.93690 0.88945 0.93081 0.88532 0.87913 0.81963 0.73654 0.95245 0.95450 0.92205 0.89842 0.91086 0.93199 0.92063 0.89702 0.94542 0.95290 0.90311 0.90792 0.92462 0.90094 0.95567 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.89 71.98 0.71 -1.78 16 2 C -0.05 -1.00 6.37 29.85 0.19 -0.81 16 3 C 0.27 8.00 6.89 138.75 0.96 8.96 16 4 N -0.51 -17.01 10.32 -187.39 -1.93 -18.95 16 5 C 0.13 4.77 9.94 84.86 0.84 5.61 16 6 C 0.07 2.25 6.34 38.31 0.24 2.49 16 7 N -0.67 -23.95 5.25 -316.57 -1.66 -25.61 16 8 C 0.70 28.18 8.05 179.05 1.44 29.62 16 9 O -0.62 -26.61 13.62 -3.99 -0.05 -26.67 16 10 N -0.60 -23.84 2.46 -844.18 -2.07 -25.91 16 11 C 0.25 11.19 4.97 85.63 0.43 11.62 16 12 C -0.55 -26.78 9.39 25.60 0.24 -26.54 16 13 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 14 C 0.03 1.46 5.46 84.66 0.46 1.92 16 15 N -0.91 -47.41 13.29 21.45 0.28 -47.13 16 16 Si 0.95 40.29 29.54 68.60 2.03 42.31 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.14 4.75 5.41 86.38 0.47 5.21 16 21 C -0.11 -3.52 5.46 30.59 0.17 -3.35 16 22 C 0.07 1.66 4.96 86.30 0.43 2.09 16 23 N -0.56 -13.67 5.02 -948.85 -4.76 -18.43 16 24 C 0.02 0.46 9.57 127.69 1.22 1.68 16 25 C 0.02 0.54 9.32 127.69 1.19 1.73 16 26 C 0.12 3.62 11.26 84.86 0.96 4.57 16 27 N -0.50 -14.73 10.32 -187.39 -1.93 -16.66 16 28 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.16 6.23 6.46 -2.91 -0.02 6.22 16 34 H 0.42 14.92 6.52 -92.71 -0.60 14.32 16 35 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 36 H 0.03 1.22 6.29 -2.38 -0.01 1.21 16 37 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 38 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 39 H 0.07 2.47 7.42 -2.38 -0.02 2.45 16 40 H 0.05 1.66 6.55 -2.39 -0.02 1.65 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 43 H 0.04 0.91 8.12 -2.39 -0.02 0.90 16 44 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 46 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 47 H 0.06 1.45 6.47 -2.39 -0.02 1.44 16 48 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 49 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.20 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -59.37 410.13 0.16 -59.21 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.33 Total: 34.80 kcal Atomic # 6 Polarization: 33.08 SS G_CDS: 9.95 Total: 43.03 kcal Atomic # 7 Polarization: -140.61 SS G_CDS: -12.08 Total: -152.69 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -59.37 0.16 -59.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119034190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.057 kcal (2) G-P(sol) polarization free energy of solvation -59.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds