Wall clock time and date at job start Tue Mar 31 2020 18:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.95941 * 2 1 4 4 C 1.33243 * 109.82878 * 180.19784 * 3 2 1 5 5 C 1.50699 * 125.52942 * 179.85476 * 4 3 2 6 6 H 1.09004 * 109.50077 * 359.71932 * 5 4 3 7 7 C 1.53115 * 109.53732 * 239.61915 * 5 4 3 8 8 C 1.53120 * 109.16307 * 182.38339 * 7 5 4 9 9 C 1.53033 * 109.27588 * 57.65435 * 8 7 5 10 10 N 1.46848 * 109.52437 * 300.82217 * 9 8 7 11 11 C 1.46905 * 111.00099 * 185.84386 * 10 9 8 12 12 H 1.09006 * 109.46325 * 292.43567 * 11 10 9 13 13 C 1.52996 * 109.47148 * 52.43609 * 11 10 9 14 14 C 1.50693 * 109.47122 * 172.43801 * 11 10 9 15 15 O 1.21286 * 120.00210 * 335.21517 * 14 11 10 16 16 N 1.34782 * 119.99931 * 155.21385 * 14 11 10 17 17 C 1.46495 * 119.99947 * 0.02562 * 16 14 11 18 18 C 1.46504 * 119.99629 * 179.97438 * 16 14 11 19 19 C 1.50697 * 109.47148 * 90.00402 * 18 16 14 20 20 H 1.08003 * 119.99855 * 359.97438 * 19 18 16 21 21 C 1.37881 * 119.99912 * 179.97438 * 19 18 16 22 22 N 1.31505 * 119.99971 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99814 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47216 * 90.00244 * 23 21 19 25 25 H 1.48504 * 109.47056 * 210.00249 * 23 21 19 26 26 H 1.48503 * 109.47333 * 329.99985 * 23 21 19 27 27 C 1.46842 * 111.20045 * 61.74167 * 10 9 8 28 28 N 1.30706 * 108.94376 * 359.59119 * 4 3 2 29 29 N 1.34430 * 125.96183 * 179.75930 * 2 1 3 30 30 H 0.96994 * 126.82084 * 359.92060 * 29 2 1 31 31 H 1.08999 * 109.46982 * 270.27024 * 1 2 3 32 32 H 1.09001 * 109.47633 * 30.26346 * 1 2 3 33 33 H 1.08997 * 109.47505 * 150.27289 * 1 2 3 34 34 H 1.08996 * 109.52104 * 302.29061 * 7 5 4 35 35 H 1.09007 * 109.52244 * 62.48270 * 7 5 4 36 36 H 1.09006 * 109.50165 * 297.71572 * 8 7 5 37 37 H 1.08996 * 109.53892 * 177.61499 * 8 7 5 38 38 H 1.09000 * 109.46096 * 180.81024 * 9 8 7 39 39 H 1.08998 * 109.45776 * 60.83233 * 9 8 7 40 40 H 1.09002 * 109.47115 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47102 * 299.99859 * 13 11 10 42 42 H 1.08998 * 109.47127 * 60.00217 * 13 11 10 43 43 H 1.08997 * 109.47110 * 89.99816 * 17 16 14 44 44 H 1.09002 * 109.46996 * 209.99541 * 17 16 14 45 45 H 1.08996 * 109.47207 * 329.99805 * 17 16 14 46 46 H 1.08998 * 109.46704 * 210.00095 * 18 16 14 47 47 H 1.08993 * 109.47288 * 329.99962 * 18 16 14 48 48 H 0.97007 * 120.00202 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.46365 * 178.24485 * 27 10 9 50 50 H 1.08995 * 109.45922 * 58.27369 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0043 5 6 4.7372 1.6236 -0.0088 6 1 4.3852 2.6553 -0.0131 7 6 5.5872 1.3684 -1.2566 8 6 6.8165 2.2806 -1.2226 9 6 7.6060 2.0167 0.0616 10 7 6.7497 2.2757 1.2261 11 6 7.5137 2.1668 2.4761 12 1 7.8135 1.1300 2.6294 13 6 8.7596 3.0507 2.3909 14 6 6.6559 2.6176 3.6301 15 8 5.7381 3.3871 3.4391 16 7 6.9086 2.1656 4.8745 17 6 8.0175 1.2366 5.1052 18 6 6.0749 2.6044 5.9964 19 6 4.9142 1.6574 6.1603 20 1 4.8079 0.8133 5.4949 21 6 3.9879 1.8685 7.1596 22 7 4.1171 2.8965 7.9694 23 14 2.5488 0.6950 7.3622 24 1 2.9303 -0.4009 8.2888 25 1 1.3847 1.4306 7.9181 26 1 2.1871 0.1223 6.0406 27 6 5.5870 1.3789 1.2402 28 7 3.6194 -0.6167 0.0017 29 7 2.2965 -1.0881 0.0046 30 1 2.0094 -2.0145 0.0095 31 1 -0.3633 0.0048 1.0277 32 1 -0.3634 0.8876 -0.5179 33 1 -0.3634 -0.8924 -0.5096 34 1 5.9070 0.3265 -1.2725 35 1 4.9986 1.5834 -2.1485 36 1 6.4972 3.3226 -1.2459 37 1 7.4478 2.0740 -2.0867 38 1 8.4742 2.6749 0.0958 39 1 7.9366 0.9782 0.0777 40 1 9.3268 2.9695 3.3182 41 1 9.3801 2.7245 1.5562 42 1 8.4599 4.0873 2.2375 43 1 8.9246 1.8004 5.3225 44 1 7.7802 0.5903 5.9503 45 1 8.1727 0.6278 4.2146 46 1 6.6696 2.6117 6.9098 47 1 5.6996 3.6085 5.7993 48 1 3.4653 3.0453 8.6722 49 1 4.9888 1.5737 2.1303 50 1 5.9272 0.3435 1.2508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268506244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:49 Heat of formation + Delta-G solvation = 28.105012 kcal Electronic energy + Delta-G solvation = -30419.419857 eV Core-core repulsion = 26482.310693 eV Total energy + Delta-G solvation = -3937.109164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.27193 -41.26474 -39.49739 -36.57252 -35.96642 -34.75026 -33.86992 -33.43057 -31.87574 -31.14258 -29.65617 -28.78893 -27.41526 -26.39140 -25.15335 -24.80001 -23.35764 -22.28685 -21.41004 -20.50024 -19.81366 -18.95204 -18.74178 -18.08396 -17.54879 -16.87047 -16.83634 -16.26793 -16.08147 -15.69236 -15.42836 -15.26669 -15.06121 -14.66495 -14.52900 -14.36596 -14.15471 -13.90124 -13.76948 -13.72934 -13.49797 -13.32645 -13.17960 -13.00516 -12.91169 -12.85036 -12.68638 -12.63751 -12.45456 -12.36016 -12.26404 -11.79817 -11.76604 -11.62265 -11.38893 -11.14519 -11.10209 -10.68745 -10.51249 -10.41463 -9.41896 -9.24957 -8.26797 -6.41438 0.49439 1.27468 1.31461 1.41106 1.65712 1.72575 1.84684 2.24568 2.35841 2.71503 3.01766 3.13607 3.47778 3.63106 3.75024 3.84248 3.88896 3.99701 4.08732 4.14263 4.24445 4.33487 4.43389 4.52739 4.60826 4.62309 4.63663 4.66646 4.74502 4.80258 4.81604 4.91285 4.96617 4.97950 4.98665 5.01068 5.07937 5.14766 5.19066 5.20018 5.30143 5.32404 5.45262 5.51773 5.80910 5.92637 6.02999 6.15203 6.17297 6.65784 6.80245 7.02669 7.24599 7.53304 8.80179 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007748 B = 0.004968 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.862879 B = 5634.248857 C = 8624.752128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.284 3.716 3 N -0.581 5.581 4 C 0.227 3.773 5 C 0.015 3.985 6 H 0.083 0.917 7 C -0.098 4.098 8 C -0.108 4.108 9 C 0.047 3.953 10 N -0.530 5.530 11 C 0.075 3.925 12 H 0.077 0.923 13 C -0.133 4.133 14 C 0.498 3.502 15 O -0.579 6.579 16 N -0.614 5.614 17 C 0.077 3.923 18 C 0.263 3.737 19 C -0.541 4.541 20 H 0.042 0.958 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.283 1.283 27 C 0.085 3.915 28 N -0.333 5.333 29 N -0.476 5.476 30 H 0.456 0.544 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.026 0.974 47 H -0.004 1.004 48 H 0.268 0.732 49 H 0.029 0.971 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -9.801 -20.649 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.311 5.311 4 C -0.056 4.056 5 C -0.007 4.007 6 H 0.102 0.898 7 C -0.136 4.136 8 C -0.145 4.145 9 C -0.079 4.079 10 N -0.256 5.256 11 C -0.037 4.037 12 H 0.094 0.906 13 C -0.191 4.191 14 C 0.286 3.714 15 O -0.458 6.458 16 N -0.346 5.346 17 C -0.065 4.065 18 C 0.141 3.859 19 C -0.580 4.580 20 H 0.061 0.939 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.208 1.208 27 C -0.044 4.044 28 N -0.163 5.163 29 N -0.196 5.196 30 H 0.304 0.696 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.044 0.956 47 H 0.014 0.986 48 H 0.077 0.923 49 H 0.047 0.953 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.267 -8.876 -20.596 22.830 hybrid contribution -1.366 -1.641 1.082 2.393 sum 2.901 -10.517 -19.515 22.357 Atomic orbital electron populations 1.20656 0.80055 1.06936 1.05695 1.25284 0.98387 0.82083 0.93669 1.70373 1.02099 1.31693 1.26920 1.24304 0.93537 0.90417 0.97326 1.19487 0.88588 0.95980 0.96636 0.89834 1.21555 0.96521 1.00776 0.94764 1.21594 0.95736 0.99905 0.97311 1.22441 0.96095 1.00754 0.88599 1.61491 1.08281 1.53757 1.02071 1.21655 0.93842 1.00554 0.87625 0.90596 1.21842 0.93706 0.99071 1.04466 1.21189 0.84751 0.80985 0.84443 1.90641 1.33209 1.37482 1.84468 1.48211 1.32424 1.46100 1.07866 1.21974 0.88500 0.93006 1.03003 1.18697 0.89307 0.94074 0.83781 1.21614 1.10420 1.11217 1.14736 0.93934 1.25804 1.00560 0.97278 0.95246 1.70036 1.37581 1.29651 1.19159 0.85482 0.78680 0.79020 0.77993 1.18311 1.20010 1.20817 1.21712 0.92384 0.93679 0.96640 1.77808 0.98459 1.12086 1.27905 1.47897 1.03390 1.10900 1.57419 0.69555 0.88296 0.87895 0.86093 0.91341 0.90942 0.91325 0.87633 0.87539 0.93579 0.90464 0.87649 0.92664 0.90476 0.91655 0.89558 0.95641 0.98609 0.92269 0.95259 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.51 71.24 0.75 -0.25 16 2 C 0.28 7.15 8.24 138.23 1.14 8.29 16 3 N -0.58 -20.04 11.19 -179.73 -2.01 -22.05 16 4 C 0.23 7.85 6.66 138.63 0.92 8.78 16 5 C 0.01 0.48 2.82 -11.49 -0.03 0.45 16 6 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 7 C -0.10 -2.28 5.27 30.67 0.16 -2.12 16 8 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 9 C 0.05 0.99 5.05 86.32 0.44 1.42 16 10 N -0.53 -16.74 4.21 -875.55 -3.69 -20.42 16 11 C 0.07 2.36 1.80 44.16 0.08 2.44 16 12 H 0.08 2.11 6.07 -2.38 -0.01 2.09 16 13 C -0.13 -3.10 8.67 71.98 0.62 -2.48 16 14 C 0.50 22.61 5.88 87.65 0.52 23.13 16 15 O -0.58 -32.92 15.24 -3.05 -0.05 -32.97 16 16 N -0.61 -27.92 2.86 -851.16 -2.43 -30.35 16 17 C 0.08 2.47 9.89 127.77 1.26 3.73 16 18 C 0.26 15.00 5.16 85.63 0.44 15.45 16 19 C -0.54 -33.05 9.39 25.60 0.24 -32.81 16 20 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 21 C 0.01 0.62 5.46 84.66 0.46 1.09 16 22 N -0.92 -57.74 13.29 21.45 0.28 -57.46 16 23 Si 0.96 46.99 29.54 68.60 2.03 49.01 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 27 C 0.09 3.10 4.45 86.33 0.38 3.49 16 28 N -0.33 -10.52 12.80 -51.34 -0.66 -11.18 16 29 N -0.48 -11.30 7.45 -50.71 -0.38 -11.67 16 30 H 0.46 6.67 8.96 -213.10 -1.91 4.76 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.73 5.85 -2.39 -0.01 1.72 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.63 7.63 -2.39 -0.02 1.61 16 41 H 0.11 1.62 6.19 -2.39 -0.01 1.60 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.98 7.99 -2.39 -0.02 1.96 16 44 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 45 H 0.09 2.21 5.85 -2.39 -0.01 2.20 16 46 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 47 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 48 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 49 H 0.03 1.40 6.43 -2.39 -0.02 1.38 16 50 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -90.78 397.42 -0.29 -91.06 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.96 Total: 17.29 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 7.57 Total: 28.74 kcal Atomic # 7 Polarization: -144.26 SS G_CDS: -8.88 Total: -153.14 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -90.78 -0.29 -91.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268506244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.169 kcal (2) G-P(sol) polarization free energy of solvation -90.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds