Wall clock time and date at job start Tue Mar 31 2020 18:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30833 * 125.95921 * 2 1 4 4 C 1.33243 * 109.82966 * 180.12205 * 3 2 1 5 5 C 1.50698 * 125.52712 * 179.85159 * 4 3 2 6 6 H 1.08995 * 109.50728 * 359.64441 * 5 4 3 7 7 C 1.53124 * 109.49955 * 119.72309 * 5 4 3 8 8 C 1.53119 * 109.15727 * 177.59449 * 7 5 4 9 9 C 1.53031 * 109.28369 * 302.34522 * 8 7 5 10 10 N 1.46852 * 109.52310 * 59.17829 * 9 8 7 11 11 C 1.46892 * 110.99970 * 174.16307 * 10 9 8 12 12 H 1.09007 * 109.47490 * 293.98571 * 11 10 9 13 13 C 1.53000 * 109.47080 * 173.98939 * 11 10 9 14 14 C 1.50703 * 109.47445 * 53.98848 * 11 10 9 15 15 O 1.21287 * 119.99553 * 26.07974 * 14 11 10 16 16 N 1.34776 * 120.00375 * 206.08091 * 14 11 10 17 17 C 1.46498 * 119.99603 * 359.97438 * 16 14 11 18 18 C 1.46497 * 120.00279 * 179.97438 * 16 14 11 19 19 C 1.50699 * 109.47203 * 89.99734 * 18 16 14 20 20 H 1.08000 * 119.99966 * 0.02562 * 19 18 16 21 21 C 1.37872 * 120.00273 * 179.97438 * 19 18 16 22 22 N 1.31513 * 119.99806 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47028 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46673 * 120.00267 * 23 21 19 26 26 H 1.48498 * 109.47214 * 239.99968 * 23 21 19 27 27 C 1.46849 * 111.19781 * 298.26240 * 10 9 8 28 28 N 1.30709 * 108.94317 * 359.59433 * 4 3 2 29 29 N 1.34424 * 125.96385 * 179.67439 * 2 1 3 30 30 H 0.97006 * 126.82343 * 359.97438 * 29 2 1 31 31 H 1.09005 * 109.47473 * 270.30510 * 1 2 3 32 32 H 1.09004 * 109.47561 * 30.29679 * 1 2 3 33 33 H 1.09001 * 109.47587 * 150.30176 * 1 2 3 34 34 H 1.09000 * 109.52065 * 57.69221 * 7 5 4 35 35 H 1.09001 * 109.57382 * 297.53130 * 7 5 4 36 36 H 1.09008 * 109.50137 * 182.40271 * 8 7 5 37 37 H 1.09003 * 109.50620 * 62.28926 * 8 7 5 38 38 H 1.09007 * 109.46304 * 299.16557 * 9 8 7 39 39 H 1.08994 * 109.46872 * 179.19867 * 9 8 7 40 40 H 1.08998 * 109.47528 * 59.99839 * 13 11 10 41 41 H 1.09004 * 109.47295 * 180.02562 * 13 11 10 42 42 H 1.09003 * 109.47029 * 299.99829 * 13 11 10 43 43 H 1.09002 * 109.47193 * 270.00146 * 17 16 14 44 44 H 1.09003 * 109.47593 * 30.00167 * 17 16 14 45 45 H 1.09007 * 109.46736 * 150.00117 * 17 16 14 46 46 H 1.08996 * 109.47312 * 209.99714 * 18 16 14 47 47 H 1.09002 * 109.46789 * 330.00281 * 18 16 14 48 48 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.46129 * 181.75819 * 27 10 9 50 50 H 1.09004 * 109.46201 * 301.72389 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7371 1.6237 -0.0067 6 1 4.3852 2.6553 -0.0135 7 6 5.5850 1.3811 1.2450 8 6 6.8149 2.2922 1.2032 9 6 7.6063 2.0146 -0.0768 10 7 6.7519 2.2617 -1.2454 11 6 7.5178 2.1392 -2.4928 12 1 8.2617 2.9344 -2.5421 13 6 6.5687 2.2541 -3.6873 14 6 8.2099 0.8009 -2.5280 15 8 7.7513 -0.1354 -1.9082 16 7 9.3382 0.6445 -3.2483 17 6 9.8917 1.7753 -3.9973 18 6 10.0113 -0.6563 -3.2820 19 6 9.4680 -1.4735 -4.4257 20 1 8.6986 -1.0646 -5.0639 21 6 9.9539 -2.7426 -4.6581 22 7 10.8912 -3.2403 -3.8813 23 14 9.2809 -3.7553 -6.0762 24 1 8.2421 -2.9734 -6.7936 25 1 10.3837 -4.0890 -7.0131 26 1 8.6825 -5.0082 -5.5497 27 6 5.5887 1.3654 -1.2517 28 7 3.6193 -0.6166 0.0043 29 7 2.2964 -1.0880 0.0062 30 1 2.0093 -2.0146 0.0118 31 1 -0.3634 0.0055 1.0277 32 1 -0.3634 0.8873 -0.5184 33 1 -0.3634 -0.8927 -0.5091 34 1 5.9042 0.3392 1.2723 35 1 4.9958 1.6050 2.1343 36 1 7.4445 2.0937 2.0706 37 1 6.4962 3.3346 1.2151 38 1 7.9364 0.9757 -0.0816 39 1 8.4749 2.6717 -0.1166 40 1 6.0681 3.2220 -3.6619 41 1 7.1369 2.1627 -4.6130 42 1 5.8247 1.4589 -3.6381 43 1 9.4690 1.7874 -5.0020 44 1 9.6427 2.7059 -3.4873 45 1 10.9752 1.6741 -4.0601 46 1 11.0825 -0.5077 -3.4183 47 1 9.8338 -1.1816 -2.3436 48 1 11.2333 -4.1331 -4.0450 49 1 4.9920 1.5511 -2.1448 50 1 5.9283 0.3296 -1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268506245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:55 Heat of formation + Delta-G solvation = 56.046147 kcal Electronic energy + Delta-G solvation = -30386.531414 eV Core-core repulsion = 26450.633869 eV Total energy + Delta-G solvation = -3935.897545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.22462 -40.12171 -37.82870 -34.90556 -34.45751 -33.12538 -32.52373 -32.43432 -30.67645 -29.69278 -27.99938 -27.75233 -25.91927 -24.83736 -24.05828 -23.22034 -21.54503 -21.29299 -20.47493 -19.36401 -18.29753 -17.86972 -16.54152 -16.52723 -16.17380 -15.79061 -15.04524 -14.74364 -14.53129 -14.43277 -14.38052 -14.08756 -13.59839 -13.46428 -13.31433 -13.22056 -13.03134 -12.85567 -12.36486 -12.15877 -12.08843 -12.02810 -11.91645 -11.80489 -11.48211 -11.27084 -11.12676 -10.98122 -10.78171 -10.62570 -10.57201 -10.39866 -10.27913 -10.14557 -10.02099 -9.97366 -9.62167 -9.43720 -9.42258 -8.43611 -7.72701 -7.57518 -6.04184 -4.08405 1.53986 2.56885 2.81113 3.28814 3.35089 3.37791 3.43006 3.74863 4.01018 4.16273 4.44717 4.51838 4.63964 4.94952 4.99130 5.05340 5.09576 5.15816 5.20433 5.29926 5.30984 5.38305 5.44174 5.52268 5.65041 5.69649 5.70366 5.80117 5.93464 5.96023 6.01123 6.03676 6.09956 6.18109 6.21543 6.23011 6.26794 6.32422 6.42223 6.46217 6.65633 6.96654 7.03231 7.20812 7.28328 7.44634 7.56384 7.92349 8.06989 8.24285 8.42704 8.90957 9.10510 9.56532 11.03976 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.003485 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.857941 B = 8031.599240 C = 9494.010055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.273 3.727 3 N -0.538 5.538 4 C 0.239 3.761 5 C 0.013 3.987 6 H 0.099 0.901 7 C -0.110 4.110 8 C -0.108 4.108 9 C 0.038 3.962 10 N -0.509 5.509 11 C 0.060 3.940 12 H 0.102 0.898 13 C -0.141 4.141 14 C 0.479 3.521 15 O -0.537 6.537 16 N -0.600 5.600 17 C 0.083 3.917 18 C 0.244 3.756 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.043 3.957 28 N -0.297 5.297 29 N -0.486 5.486 30 H 0.439 0.561 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.042 0.958 48 H 0.262 0.738 49 H 0.073 0.927 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 12.332 7.916 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 N -0.268 5.268 4 C -0.044 4.044 5 C -0.008 4.008 6 H 0.117 0.883 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.090 4.090 10 N -0.233 5.233 11 C -0.052 4.052 12 H 0.119 0.881 13 C -0.199 4.199 14 C 0.264 3.736 15 O -0.415 6.415 16 N -0.332 5.332 17 C -0.061 4.061 18 C 0.125 3.875 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.085 4.085 28 N -0.125 5.125 29 N -0.204 5.204 30 H 0.284 0.716 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.517 12.130 8.303 21.374 hybrid contribution -0.292 -2.215 -1.014 2.454 sum -15.809 9.915 7.289 20.034 Atomic orbital electron populations 1.20358 0.83858 1.04894 1.04353 1.24373 0.96538 0.83123 0.96478 1.70356 1.01479 1.29467 1.25473 1.24197 0.92905 0.90096 0.97192 1.19542 0.88313 0.96326 0.96655 0.88260 1.21597 0.96162 1.01040 0.96063 1.21499 0.96237 0.99895 0.96943 1.22281 0.95261 1.01688 0.89779 1.62431 1.07804 1.51990 1.01028 1.21929 0.96262 0.95357 0.91642 0.88075 1.21812 0.99272 1.02776 0.96051 1.21485 0.81438 0.90650 0.80000 1.90613 1.64001 1.42316 1.44552 1.48289 1.25508 1.13029 1.46355 1.21696 0.99642 0.88641 0.96151 1.19287 0.91798 0.78045 0.98379 1.21445 1.21485 0.99854 1.13322 0.92543 1.24935 0.95054 0.97460 0.96722 1.69943 1.28160 1.17032 1.38298 0.86459 0.78799 0.80207 0.82066 1.19844 1.20928 1.20926 1.22418 0.91316 0.98739 0.96076 1.78192 0.95865 1.12537 1.25890 1.48071 1.04588 1.09977 1.57752 0.71615 0.89183 0.88441 0.89988 0.91122 0.92068 0.91352 0.91216 0.92128 0.91239 0.91047 0.91545 0.91838 0.93126 0.92350 0.91447 0.95151 0.93998 0.92819 0.90852 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.27 2.99 8.24 -155.70 -1.28 1.71 16 3 N -0.54 -7.63 11.19 -8.16 -0.09 -7.72 16 4 C 0.24 3.70 6.65 -156.86 -1.04 2.66 16 5 C 0.01 0.19 2.82 -91.69 -0.26 -0.07 16 6 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 7 C -0.11 -1.50 5.27 -26.61 -0.14 -1.64 16 8 C -0.11 -1.34 6.09 -26.65 -0.16 -1.50 16 9 C 0.04 0.57 4.90 -3.83 -0.02 0.55 16 10 N -0.51 -7.77 4.73 -228.08 -1.08 -8.85 16 11 C 0.06 0.95 2.29 -68.87 -0.16 0.79 16 12 H 0.10 1.37 6.01 -51.93 -0.31 1.06 16 13 C -0.14 -2.02 8.59 37.16 0.32 -1.70 16 14 C 0.48 9.95 5.93 -10.98 -0.07 9.89 16 15 O -0.54 -13.34 11.91 5.55 0.07 -13.28 16 16 N -0.60 -12.82 2.86 -182.95 -0.52 -13.34 16 17 C 0.08 1.32 10.08 59.85 0.60 1.92 16 18 C 0.24 6.49 5.20 -5.20 -0.03 6.46 16 19 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 23 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.04 0.71 3.90 -3.83 -0.01 0.69 16 28 N -0.30 -4.78 12.80 32.42 0.41 -4.37 16 29 N -0.49 -5.67 7.45 32.62 0.24 -5.43 16 30 H 0.44 3.51 8.96 -182.33 -1.63 1.87 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.14 6.04 -51.93 -0.31 0.82 16 39 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 42 H 0.06 1.02 6.19 -51.93 -0.32 0.70 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.06 0.73 5.83 -51.93 -0.30 0.43 16 45 H 0.07 1.03 7.89 -51.92 -0.41 0.62 16 46 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 47 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.07 1.21 5.82 -51.93 -0.30 0.90 16 50 H 0.09 1.77 5.65 -51.93 -0.29 1.48 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -36.72 391.64 -10.93 -47.64 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -9.29 Total: 2.49 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -2.29 Total: 5.98 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.30 Total: -65.99 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.28 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.72 -10.93 -47.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268506245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.691 kcal (2) G-P(sol) polarization free energy of solvation -36.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds