Wall clock time and date at job start Tue Mar 31 2020 18:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30833 * 125.95921 * 2 1 4 4 C 1.33243 * 109.82966 * 180.12205 * 3 2 1 5 5 C 1.50698 * 125.52712 * 179.85159 * 4 3 2 6 6 H 1.08995 * 109.50728 * 359.64441 * 5 4 3 7 7 C 1.53124 * 109.49955 * 119.72309 * 5 4 3 8 8 C 1.53119 * 109.15727 * 177.59449 * 7 5 4 9 9 C 1.53031 * 109.28369 * 302.34522 * 8 7 5 10 10 N 1.46852 * 109.52310 * 59.17829 * 9 8 7 11 11 C 1.46892 * 110.99970 * 174.16307 * 10 9 8 12 12 H 1.09007 * 109.47490 * 293.98571 * 11 10 9 13 13 C 1.53000 * 109.47080 * 173.98939 * 11 10 9 14 14 C 1.50703 * 109.47445 * 53.98848 * 11 10 9 15 15 O 1.21287 * 119.99553 * 26.07974 * 14 11 10 16 16 N 1.34776 * 120.00375 * 206.08091 * 14 11 10 17 17 C 1.46498 * 119.99603 * 359.97438 * 16 14 11 18 18 C 1.46497 * 120.00279 * 179.97438 * 16 14 11 19 19 C 1.50699 * 109.47203 * 89.99734 * 18 16 14 20 20 H 1.08000 * 119.99966 * 0.02562 * 19 18 16 21 21 C 1.37872 * 120.00273 * 179.97438 * 19 18 16 22 22 N 1.31513 * 119.99806 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47028 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46673 * 120.00267 * 23 21 19 26 26 H 1.48498 * 109.47214 * 239.99968 * 23 21 19 27 27 C 1.46849 * 111.19781 * 298.26240 * 10 9 8 28 28 N 1.30709 * 108.94317 * 359.59433 * 4 3 2 29 29 N 1.34424 * 125.96385 * 179.67439 * 2 1 3 30 30 H 0.97006 * 126.82343 * 359.97438 * 29 2 1 31 31 H 1.09005 * 109.47473 * 270.30510 * 1 2 3 32 32 H 1.09004 * 109.47561 * 30.29679 * 1 2 3 33 33 H 1.09001 * 109.47587 * 150.30176 * 1 2 3 34 34 H 1.09000 * 109.52065 * 57.69221 * 7 5 4 35 35 H 1.09001 * 109.57382 * 297.53130 * 7 5 4 36 36 H 1.09008 * 109.50137 * 182.40271 * 8 7 5 37 37 H 1.09003 * 109.50620 * 62.28926 * 8 7 5 38 38 H 1.09007 * 109.46304 * 299.16557 * 9 8 7 39 39 H 1.08994 * 109.46872 * 179.19867 * 9 8 7 40 40 H 1.08998 * 109.47528 * 59.99839 * 13 11 10 41 41 H 1.09004 * 109.47295 * 180.02562 * 13 11 10 42 42 H 1.09003 * 109.47029 * 299.99829 * 13 11 10 43 43 H 1.09002 * 109.47193 * 270.00146 * 17 16 14 44 44 H 1.09003 * 109.47593 * 30.00167 * 17 16 14 45 45 H 1.09007 * 109.46736 * 150.00117 * 17 16 14 46 46 H 1.08996 * 109.47312 * 209.99714 * 18 16 14 47 47 H 1.09002 * 109.46789 * 330.00281 * 18 16 14 48 48 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.46129 * 181.75819 * 27 10 9 50 50 H 1.09004 * 109.46201 * 301.72389 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7371 1.6237 -0.0067 6 1 4.3852 2.6553 -0.0135 7 6 5.5850 1.3811 1.2450 8 6 6.8149 2.2922 1.2032 9 6 7.6063 2.0146 -0.0768 10 7 6.7519 2.2617 -1.2454 11 6 7.5178 2.1392 -2.4928 12 1 8.2617 2.9344 -2.5421 13 6 6.5687 2.2541 -3.6873 14 6 8.2099 0.8009 -2.5280 15 8 7.7513 -0.1354 -1.9082 16 7 9.3382 0.6445 -3.2483 17 6 9.8917 1.7753 -3.9973 18 6 10.0113 -0.6563 -3.2820 19 6 9.4680 -1.4735 -4.4257 20 1 8.6986 -1.0646 -5.0639 21 6 9.9539 -2.7426 -4.6581 22 7 10.8912 -3.2403 -3.8813 23 14 9.2809 -3.7553 -6.0762 24 1 8.2421 -2.9734 -6.7936 25 1 10.3837 -4.0890 -7.0131 26 1 8.6825 -5.0082 -5.5497 27 6 5.5887 1.3654 -1.2517 28 7 3.6193 -0.6166 0.0043 29 7 2.2964 -1.0880 0.0062 30 1 2.0093 -2.0146 0.0118 31 1 -0.3634 0.0055 1.0277 32 1 -0.3634 0.8873 -0.5184 33 1 -0.3634 -0.8927 -0.5091 34 1 5.9042 0.3392 1.2723 35 1 4.9958 1.6050 2.1343 36 1 7.4445 2.0937 2.0706 37 1 6.4962 3.3346 1.2151 38 1 7.9364 0.9757 -0.0816 39 1 8.4749 2.6717 -0.1166 40 1 6.0681 3.2220 -3.6619 41 1 7.1369 2.1627 -4.6130 42 1 5.8247 1.4589 -3.6381 43 1 9.4690 1.7874 -5.0020 44 1 9.6427 2.7059 -3.4873 45 1 10.9752 1.6741 -4.0601 46 1 11.0825 -0.5077 -3.4183 47 1 9.8338 -1.1816 -2.3436 48 1 11.2333 -4.1331 -4.0450 49 1 4.9920 1.5511 -2.1448 50 1 5.9283 0.3296 -1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268506245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:54 Heat of formation + Delta-G solvation = 29.051061 kcal Electronic energy + Delta-G solvation = -30387.702009 eV Core-core repulsion = 26450.633869 eV Total energy + Delta-G solvation = -3937.068140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.22203 -41.57791 -39.23982 -36.61703 -35.78254 -34.74946 -34.05639 -33.36976 -31.71980 -31.04176 -29.65503 -28.77363 -27.41398 -26.30088 -25.25574 -24.97806 -22.80871 -22.47284 -21.56446 -20.55123 -19.80771 -18.87150 -18.72865 -18.04240 -17.56953 -16.84076 -16.73231 -16.24173 -15.94638 -15.88862 -15.53489 -15.19099 -15.02613 -14.73888 -14.46015 -14.33456 -13.99139 -13.81320 -13.71935 -13.61432 -13.49287 -13.37529 -13.30528 -13.07913 -12.84981 -12.76551 -12.70643 -12.53084 -12.32362 -12.24296 -12.14369 -11.78347 -11.69768 -11.50400 -11.45369 -11.08521 -11.01701 -11.00490 -10.69484 -10.47791 -9.44407 -9.13064 -8.26976 -6.41682 0.58484 1.30281 1.32699 1.44533 1.71353 1.76381 1.80861 2.28957 2.44313 2.70072 3.02068 3.11112 3.56209 3.69130 3.79533 3.81810 3.95903 4.07005 4.10222 4.14582 4.32561 4.44660 4.48931 4.49788 4.63971 4.68410 4.69653 4.75790 4.80995 4.85338 4.87297 4.92648 4.97299 4.98815 5.02977 5.04853 5.12125 5.14634 5.18680 5.21915 5.27413 5.35801 5.46343 5.53912 5.81739 5.91150 5.99475 6.02579 6.19247 6.65774 6.77966 7.06834 7.24485 7.48267 8.80154 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.003485 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.857941 B = 8031.599240 C = 9494.010055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.565 5.565 4 C 0.229 3.771 5 C 0.019 3.981 6 H 0.114 0.886 7 C -0.105 4.105 8 C -0.099 4.099 9 C 0.037 3.963 10 N -0.491 5.491 11 C 0.069 3.931 12 H 0.137 0.863 13 C -0.136 4.136 14 C 0.470 3.530 15 O -0.587 6.587 16 N -0.608 5.608 17 C 0.077 3.923 18 C 0.261 3.739 19 C -0.539 4.539 20 H 0.050 0.950 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.265 1.265 26 H -0.283 1.283 27 C 0.054 3.946 28 N -0.349 5.349 29 N -0.482 5.482 30 H 0.452 0.548 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.014 0.986 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.023 0.977 47 H -0.008 1.008 48 H 0.267 0.733 49 H 0.071 0.929 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.721 14.792 7.167 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.007 3.993 3 N -0.295 5.295 4 C -0.054 4.054 5 C -0.003 4.003 6 H 0.132 0.868 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.091 4.091 10 N -0.214 5.214 11 C -0.043 4.043 12 H 0.154 0.846 13 C -0.194 4.194 14 C 0.258 3.742 15 O -0.468 6.468 16 N -0.340 5.340 17 C -0.065 4.065 18 C 0.139 3.861 19 C -0.577 4.577 20 H 0.068 0.932 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.791 3.209 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.209 1.209 27 C -0.075 4.075 28 N -0.178 5.178 29 N -0.201 5.201 30 H 0.300 0.700 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.032 0.968 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.010 0.990 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.427 14.618 7.541 23.963 hybrid contribution 0.245 -3.025 -0.735 3.123 sum -17.182 11.592 6.806 21.815 Atomic orbital electron populations 1.20653 0.79686 1.06557 1.06195 1.25395 0.98404 0.81982 0.93552 1.70363 1.01095 1.30912 1.27133 1.24339 0.93774 0.90039 0.97254 1.19515 0.88027 0.96906 0.95823 0.86758 1.21540 0.96907 0.99417 0.96465 1.21497 0.95380 1.00823 0.95978 1.22334 0.96408 0.99375 0.91000 1.62580 1.07292 1.50451 1.01062 1.22128 0.96888 0.92667 0.92638 0.84553 1.21822 0.98497 1.03634 0.95440 1.22587 0.80846 0.92239 0.78569 1.90616 1.65206 1.44655 1.46362 1.48339 1.25773 1.12579 1.47298 1.22005 0.99821 0.88185 0.96511 1.18718 0.91659 0.80483 0.95269 1.21695 1.21450 1.00764 1.13817 0.93177 1.25869 0.95241 0.98659 0.99518 1.70060 1.29229 1.17605 1.39956 0.85384 0.78604 0.78121 0.78810 1.19224 1.19010 1.20902 1.22195 0.91880 0.96258 0.97161 1.78099 0.98640 1.13405 1.27696 1.48002 1.03415 1.11108 1.57617 0.69987 0.87010 0.87764 0.87284 0.94523 0.90438 0.89922 0.88621 0.96757 0.89190 0.87655 0.90894 0.94398 0.92211 0.88031 0.91094 0.95953 0.98997 0.92422 0.91080 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 71.23 0.75 0.16 16 2 C 0.28 5.91 8.24 138.22 1.14 7.05 16 3 N -0.56 -15.73 11.19 -179.74 -2.01 -17.74 16 4 C 0.23 7.27 6.65 138.63 0.92 8.20 16 5 C 0.02 0.55 2.82 -11.49 -0.03 0.51 16 6 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 7 C -0.10 -2.90 5.27 30.68 0.16 -2.74 16 8 C -0.10 -2.35 6.09 30.64 0.19 -2.16 16 9 C 0.04 1.10 4.90 86.32 0.42 1.52 16 10 N -0.49 -14.64 4.73 -875.51 -4.14 -18.77 16 11 C 0.07 2.08 2.29 44.17 0.10 2.18 16 12 H 0.14 3.17 6.01 -2.38 -0.01 3.16 16 13 C -0.14 -3.66 8.59 71.98 0.62 -3.05 16 14 C 0.47 20.15 5.93 87.66 0.52 20.67 16 15 O -0.59 -31.46 11.91 -3.05 -0.04 -31.50 16 16 N -0.61 -26.59 2.86 -851.12 -2.43 -29.02 16 17 C 0.08 2.32 10.08 127.77 1.29 3.61 16 18 C 0.26 14.59 5.20 85.63 0.45 15.03 16 19 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 20 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.35 5.46 84.65 0.46 0.81 16 22 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 23 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 C 0.05 1.84 3.90 86.33 0.34 2.18 16 28 N -0.35 -11.86 12.80 -51.34 -0.66 -12.52 16 29 N -0.48 -11.31 7.45 -50.72 -0.38 -11.69 16 30 H 0.45 7.20 8.96 -213.09 -1.91 5.29 16 31 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.01 0.57 6.04 -2.38 -0.01 0.55 16 39 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 1.87 7.89 -2.38 -0.02 1.85 16 42 H 0.04 1.21 6.19 -2.39 -0.01 1.20 16 43 H 0.06 1.71 8.12 -2.39 -0.02 1.70 16 44 H 0.10 2.16 5.83 -2.39 -0.01 2.15 16 45 H 0.07 2.09 7.89 -2.38 -0.02 2.07 16 46 H 0.02 1.27 7.89 -2.39 -0.02 1.25 16 47 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.07 2.40 5.82 -2.39 -0.01 2.39 16 50 H 0.04 1.72 5.65 -2.39 -0.01 1.71 16 Total: -1.00 -87.37 391.64 -0.73 -88.10 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.96 Total: 20.22 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 7.56 Total: 22.03 kcal Atomic # 7 Polarization: -137.94 SS G_CDS: -9.33 Total: -147.27 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.04 Total: -31.50 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -87.37 -0.73 -88.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268506245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.156 kcal (2) G-P(sol) polarization free energy of solvation -87.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds