Wall clock time and date at job start Tue Mar 31 2020 18:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30834 * 125.96516 * 2 1 4 4 C 1.33233 * 109.82996 * 179.73851 * 3 2 1 5 5 C 1.50702 * 125.52643 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.50274 * 359.92006 * 5 4 3 7 7 C 1.53119 * 109.50534 * 239.79797 * 5 4 3 8 8 C 1.53117 * 109.16122 * 182.40029 * 7 5 4 9 9 C 1.53042 * 109.27597 * 57.66142 * 8 7 5 10 10 N 1.46845 * 109.52137 * 300.81293 * 9 8 7 11 11 C 1.46896 * 111.00200 * 185.84220 * 10 9 8 12 12 C 1.53001 * 109.47050 * 65.79207 * 11 10 9 13 13 C 1.50703 * 109.46931 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00062 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99583 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00168 * 0.02562 * 15 13 12 17 17 C 1.46501 * 119.99781 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47057 * 90.00056 * 17 15 13 19 19 H 1.07997 * 120.00006 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99882 * 179.97438 * 18 17 15 21 21 N 1.31515 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99772 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47294 * 60.00346 * 22 20 18 24 24 H 1.48501 * 109.47360 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47435 * 300.00311 * 22 20 18 26 26 C 1.46852 * 111.19549 * 61.74732 * 10 9 8 27 27 N 1.30708 * 108.95078 * 359.97438 * 4 3 2 28 28 N 1.34429 * 125.95883 * 179.69024 * 2 1 3 29 29 H 0.97003 * 126.82753 * 0.26347 * 28 2 1 30 30 H 1.09007 * 109.47229 * 90.00073 * 1 2 3 31 31 H 1.08998 * 109.47296 * 210.00165 * 1 2 3 32 32 H 1.09001 * 109.46851 * 330.00324 * 1 2 3 33 33 H 1.08998 * 109.52424 * 302.30931 * 7 5 4 34 34 H 1.09002 * 109.51838 * 62.49846 * 7 5 4 35 35 H 1.08992 * 109.50785 * 297.71560 * 8 7 5 36 36 H 1.09004 * 109.50288 * 177.59565 * 8 7 5 37 37 H 1.09006 * 109.45879 * 180.80247 * 9 8 7 38 38 H 1.08998 * 109.45530 * 60.82612 * 9 8 7 39 39 H 1.08996 * 109.47216 * 185.79721 * 11 10 9 40 40 H 1.09002 * 109.46565 * 305.79098 * 11 10 9 41 41 H 1.08999 * 109.47007 * 299.99783 * 12 11 10 42 42 H 1.08998 * 109.47027 * 59.99944 * 12 11 10 43 43 H 1.09001 * 109.47498 * 90.00068 * 16 15 13 44 44 H 1.09008 * 109.47182 * 209.99732 * 16 15 13 45 45 H 1.08994 * 109.47198 * 329.99457 * 16 15 13 46 46 H 1.09004 * 109.47518 * 210.00269 * 17 15 13 47 47 H 1.08997 * 109.47372 * 330.00076 * 17 15 13 48 48 H 0.96994 * 120.00183 * 179.97438 * 21 20 18 49 49 H 1.08994 * 109.46273 * 178.24426 * 26 10 9 50 50 H 1.08993 * 109.45798 * 58.26532 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 0.0057 5 6 4.7372 1.6235 0.0070 6 1 4.3853 2.6551 0.0011 7 6 5.5930 1.3673 -1.2365 8 6 6.8227 2.2788 -1.1969 9 6 7.6059 2.0149 0.0911 10 7 6.7443 2.2748 1.2514 11 6 7.5022 2.1659 2.5050 12 6 8.5498 3.2793 2.5660 13 6 9.3278 3.1671 3.8518 14 8 9.0694 2.2838 4.6418 15 7 10.3106 4.0482 4.1238 16 6 10.6223 5.1154 3.1698 17 6 11.0665 3.9395 5.3740 18 6 12.2657 3.0521 5.1604 19 1 12.4468 2.6134 4.1903 20 6 13.1321 2.8012 6.2032 21 7 12.9118 3.3359 7.3844 22 14 14.6181 1.7007 5.9385 23 1 15.4854 2.2850 4.8843 24 1 15.3845 1.5905 7.2057 25 1 14.1655 0.3511 5.5155 26 6 5.5809 1.3787 1.2602 27 7 3.6194 -0.6168 0.0100 28 7 2.2963 -1.0881 0.0059 29 1 2.0093 -2.0147 0.0073 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.9124 0.3252 -1.2506 34 1 5.0089 1.5823 -2.1313 35 1 6.5042 3.3209 -1.2222 36 1 7.4578 2.0708 -2.0581 37 1 8.4745 2.6725 0.1292 38 1 7.9358 0.9762 0.1091 39 1 6.8212 2.2609 3.3507 40 1 7.9992 1.1966 2.5459 41 1 9.2308 3.1841 1.7203 42 1 8.0527 4.2485 2.5250 43 1 10.0199 5.9946 3.3984 44 1 11.6796 5.3705 3.2425 45 1 10.3994 4.7753 2.1585 46 1 11.3984 4.9300 5.6853 47 1 10.4299 3.5100 6.1474 48 1 13.5212 3.1591 8.1180 49 1 4.9786 1.5741 2.1473 50 1 5.9205 0.3430 1.2727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271567385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:33 Heat of formation + Delta-G solvation = 42.523892 kcal Electronic energy + Delta-G solvation = -28621.064571 eV Core-core repulsion = 24684.580657 eV Total energy + Delta-G solvation = -3936.483914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.51050 -39.47329 -38.60813 -35.05291 -34.62034 -33.11379 -32.70850 -32.56860 -31.00542 -30.21681 -28.21630 -27.67402 -25.81782 -24.96905 -24.16922 -22.91441 -22.07624 -21.36709 -20.44168 -19.60446 -18.24757 -18.22193 -16.67781 -16.48416 -16.09163 -15.50917 -15.43619 -15.24064 -14.85070 -14.70614 -14.50151 -14.31923 -13.91865 -13.85688 -13.54095 -13.32146 -13.18044 -13.07752 -12.48851 -12.30138 -12.20452 -12.13951 -11.99767 -11.80615 -11.62184 -11.50783 -11.14425 -11.12097 -10.88864 -10.83648 -10.72478 -10.54461 -10.43072 -10.31928 -10.28491 -10.12815 -9.74081 -9.60624 -8.82760 -8.40327 -8.34315 -7.58189 -6.01099 -4.05774 1.24006 2.27517 2.52829 3.33487 3.37834 3.39965 3.43941 3.52455 3.80909 4.17963 4.25188 4.40512 4.48321 4.63647 4.70003 4.83777 4.86705 4.93810 5.12388 5.22282 5.26271 5.27023 5.32178 5.32707 5.39407 5.42714 5.54049 5.60009 5.68588 5.75784 5.80085 5.83273 5.90775 5.92820 5.98459 6.02943 6.09851 6.14368 6.20175 6.26312 6.27338 6.67951 7.03398 7.05262 7.12462 7.49107 7.59639 7.78159 7.95492 8.27424 8.48619 8.93869 9.16205 9.59069 11.06888 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.504600 B =14233.637540 C =14511.574228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.280 3.720 3 N -0.536 5.536 4 C 0.241 3.759 5 C 0.010 3.990 6 H 0.107 0.893 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.047 3.953 10 N -0.537 5.537 11 C 0.074 3.926 12 C -0.134 4.134 13 C 0.504 3.496 14 O -0.546 6.546 15 N -0.604 5.604 16 C 0.084 3.916 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.069 3.931 27 N -0.310 5.310 28 N -0.485 5.485 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.263 0.737 49 H 0.077 0.923 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.224 -3.592 -20.355 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.001 3.999 3 N -0.265 5.265 4 C -0.043 4.043 5 C -0.011 4.011 6 H 0.125 0.875 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.081 4.081 10 N -0.262 5.262 11 C -0.054 4.054 12 C -0.175 4.175 13 C 0.290 3.710 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.125 3.875 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.060 4.060 27 N -0.138 5.138 28 N -0.204 5.204 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.859 -3.574 -19.753 30.422 hybrid contribution 0.841 -2.091 -0.032 2.254 sum -22.018 -5.665 -19.785 30.138 Atomic orbital electron populations 1.20399 0.83627 1.05109 1.04544 1.24432 0.96661 0.82930 0.95849 1.70391 1.01428 1.29462 1.25261 1.24183 0.93078 0.89988 0.97009 1.19582 0.88251 0.97090 0.96199 0.87472 1.21611 0.96323 1.00550 0.96385 1.21572 0.96142 1.00500 0.96921 1.22216 0.95892 0.99857 0.90143 1.61858 1.08540 1.52952 1.02822 1.21777 0.95300 0.97488 0.90809 1.21647 0.97789 1.01053 0.96977 1.20322 0.80736 0.82053 0.87862 1.90664 1.67862 1.33969 1.49927 1.48153 1.34451 1.28715 1.22275 1.21627 1.01838 0.90274 0.92234 1.19270 0.90642 0.97190 0.80356 1.21401 1.08337 1.29823 0.96879 0.92582 1.24944 0.98205 0.96069 0.94968 1.69923 1.37780 1.44354 1.01351 0.86560 0.82323 0.81207 0.77326 1.20263 1.21181 1.20232 1.21974 0.92024 0.95026 0.97005 1.78030 0.96388 1.12533 1.26857 1.48028 1.04454 1.10025 1.57860 0.71544 0.88999 0.89869 0.88232 0.91498 0.91677 0.90650 0.91134 0.90045 0.94653 0.89942 0.93797 0.89598 0.88772 0.93729 0.90928 0.92411 0.95057 0.93880 0.92694 0.90483 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.51 36.00 0.38 0.13 16 2 C 0.28 2.26 8.24 -155.69 -1.28 0.98 16 3 N -0.54 -6.11 11.19 -8.16 -0.09 -6.20 16 4 C 0.24 2.83 6.65 -156.86 -1.04 1.79 16 5 C 0.01 0.11 2.82 -91.69 -0.26 -0.15 16 6 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 7 C -0.11 -1.04 5.27 -26.61 -0.14 -1.18 16 8 C -0.11 -1.00 6.09 -26.65 -0.16 -1.16 16 9 C 0.05 0.50 5.29 -3.83 -0.02 0.48 16 10 N -0.54 -6.61 4.66 -234.67 -1.09 -7.70 16 11 C 0.07 1.10 4.25 -3.83 -0.02 1.08 16 12 C -0.13 -2.03 4.18 -27.88 -0.12 -2.14 16 13 C 0.50 10.66 7.67 -10.99 -0.08 10.58 16 14 O -0.55 -14.02 15.56 5.56 0.09 -13.93 16 15 N -0.60 -13.09 2.86 -182.96 -0.52 -13.61 16 16 C 0.08 1.36 10.24 59.85 0.61 1.97 16 17 C 0.24 6.56 5.16 -5.19 -0.03 6.53 16 18 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 22 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.07 0.83 4.73 -3.83 -0.02 0.81 16 27 N -0.31 -3.60 12.80 32.42 0.41 -3.19 16 28 N -0.49 -3.90 7.45 32.62 0.24 -3.66 16 29 H 0.44 1.89 8.96 -182.33 -1.63 0.25 16 30 H 0.09 0.17 8.14 -51.92 -0.42 -0.26 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.84 6.21 -51.93 -0.32 0.52 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 1.31 7.94 -51.93 -0.41 0.90 16 40 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.09 1.15 5.69 -51.93 -0.30 0.86 16 42 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 45 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 46 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 47 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 49 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 50 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -37.01 403.30 -11.44 -48.45 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -9.68 Total: -2.99 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.60 Total: 5.85 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.31 Total: -60.65 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.01 -11.44 -48.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271567385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.978 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds