Wall clock time and date at job start Tue Mar 31 2020 18:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30834 * 125.96516 * 2 1 4 4 C 1.33233 * 109.82996 * 179.73851 * 3 2 1 5 5 C 1.50702 * 125.52643 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.50274 * 359.92006 * 5 4 3 7 7 C 1.53119 * 109.50534 * 239.79797 * 5 4 3 8 8 C 1.53117 * 109.16122 * 182.40029 * 7 5 4 9 9 C 1.53042 * 109.27597 * 57.66142 * 8 7 5 10 10 N 1.46845 * 109.52137 * 300.81293 * 9 8 7 11 11 C 1.46896 * 111.00200 * 185.84220 * 10 9 8 12 12 C 1.53001 * 109.47050 * 65.79207 * 11 10 9 13 13 C 1.50703 * 109.46931 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00062 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99583 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00168 * 0.02562 * 15 13 12 17 17 C 1.46501 * 119.99781 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47057 * 90.00056 * 17 15 13 19 19 H 1.07997 * 120.00006 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99882 * 179.97438 * 18 17 15 21 21 N 1.31515 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99772 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47294 * 60.00346 * 22 20 18 24 24 H 1.48501 * 109.47360 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47435 * 300.00311 * 22 20 18 26 26 C 1.46852 * 111.19549 * 61.74732 * 10 9 8 27 27 N 1.30708 * 108.95078 * 359.97438 * 4 3 2 28 28 N 1.34429 * 125.95883 * 179.69024 * 2 1 3 29 29 H 0.97003 * 126.82753 * 0.26347 * 28 2 1 30 30 H 1.09007 * 109.47229 * 90.00073 * 1 2 3 31 31 H 1.08998 * 109.47296 * 210.00165 * 1 2 3 32 32 H 1.09001 * 109.46851 * 330.00324 * 1 2 3 33 33 H 1.08998 * 109.52424 * 302.30931 * 7 5 4 34 34 H 1.09002 * 109.51838 * 62.49846 * 7 5 4 35 35 H 1.08992 * 109.50785 * 297.71560 * 8 7 5 36 36 H 1.09004 * 109.50288 * 177.59565 * 8 7 5 37 37 H 1.09006 * 109.45879 * 180.80247 * 9 8 7 38 38 H 1.08998 * 109.45530 * 60.82612 * 9 8 7 39 39 H 1.08996 * 109.47216 * 185.79721 * 11 10 9 40 40 H 1.09002 * 109.46565 * 305.79098 * 11 10 9 41 41 H 1.08999 * 109.47007 * 299.99783 * 12 11 10 42 42 H 1.08998 * 109.47027 * 59.99944 * 12 11 10 43 43 H 1.09001 * 109.47498 * 90.00068 * 16 15 13 44 44 H 1.09008 * 109.47182 * 209.99732 * 16 15 13 45 45 H 1.08994 * 109.47198 * 329.99457 * 16 15 13 46 46 H 1.09004 * 109.47518 * 210.00269 * 17 15 13 47 47 H 1.08997 * 109.47372 * 330.00076 * 17 15 13 48 48 H 0.96994 * 120.00183 * 179.97438 * 21 20 18 49 49 H 1.08994 * 109.46273 * 178.24426 * 26 10 9 50 50 H 1.08993 * 109.45798 * 58.26532 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 0.0057 5 6 4.7372 1.6235 0.0070 6 1 4.3853 2.6551 0.0011 7 6 5.5930 1.3673 -1.2365 8 6 6.8227 2.2788 -1.1969 9 6 7.6059 2.0149 0.0911 10 7 6.7443 2.2748 1.2514 11 6 7.5022 2.1659 2.5050 12 6 8.5498 3.2793 2.5660 13 6 9.3278 3.1671 3.8518 14 8 9.0694 2.2838 4.6418 15 7 10.3106 4.0482 4.1238 16 6 10.6223 5.1154 3.1698 17 6 11.0665 3.9395 5.3740 18 6 12.2657 3.0521 5.1604 19 1 12.4468 2.6134 4.1903 20 6 13.1321 2.8012 6.2032 21 7 12.9118 3.3359 7.3844 22 14 14.6181 1.7007 5.9385 23 1 15.4854 2.2850 4.8843 24 1 15.3845 1.5905 7.2057 25 1 14.1655 0.3511 5.5155 26 6 5.5809 1.3787 1.2602 27 7 3.6194 -0.6168 0.0100 28 7 2.2963 -1.0881 0.0059 29 1 2.0093 -2.0147 0.0073 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.9124 0.3252 -1.2506 34 1 5.0089 1.5823 -2.1313 35 1 6.5042 3.3209 -1.2222 36 1 7.4578 2.0708 -2.0581 37 1 8.4745 2.6725 0.1292 38 1 7.9358 0.9762 0.1091 39 1 6.8212 2.2609 3.3507 40 1 7.9992 1.1966 2.5459 41 1 9.2308 3.1841 1.7203 42 1 8.0527 4.2485 2.5250 43 1 10.0199 5.9946 3.3984 44 1 11.6796 5.3705 3.2425 45 1 10.3994 4.7753 2.1585 46 1 11.3984 4.9300 5.6853 47 1 10.4299 3.5100 6.1474 48 1 13.5212 3.1591 8.1180 49 1 4.9786 1.5741 2.1473 50 1 5.9205 0.3430 1.2727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271567385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:32 Heat of formation + Delta-G solvation = 16.229603 kcal Electronic energy + Delta-G solvation = -28622.204777 eV Core-core repulsion = 24684.580657 eV Total energy + Delta-G solvation = -3937.624120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.22528 -40.83101 -39.88344 -36.63739 -35.82494 -34.72647 -33.85464 -33.37558 -31.94450 -31.35615 -29.56192 -28.74667 -27.30916 -26.23419 -25.24766 -24.42807 -23.12946 -22.23203 -21.34664 -20.45300 -19.84533 -18.89867 -18.69917 -18.03331 -17.12202 -16.82277 -16.72198 -16.59627 -16.19505 -15.88076 -15.48744 -15.37445 -15.00886 -14.76755 -14.55390 -14.35849 -14.02164 -13.82108 -13.66848 -13.63226 -13.55755 -13.42786 -13.27010 -13.16066 -12.81036 -12.78277 -12.73526 -12.45769 -12.40057 -12.19548 -12.11526 -11.72824 -11.66693 -11.60341 -11.38254 -11.09554 -11.04765 -10.64681 -10.59605 -10.46457 -9.41610 -9.38429 -8.22474 -6.37583 0.55486 1.35423 1.40072 1.47297 1.70236 1.76628 1.86307 2.27619 2.41080 2.77218 3.06494 3.15017 3.53478 3.75639 3.78872 3.87768 3.93544 4.04888 4.07053 4.19274 4.31678 4.36472 4.43879 4.52731 4.64916 4.66040 4.67926 4.70024 4.75252 4.77816 4.91313 4.92493 4.98651 5.01542 5.02469 5.05254 5.06098 5.11358 5.20008 5.23683 5.24819 5.36449 5.46620 5.56556 5.85376 5.95462 6.06323 6.08279 6.18779 6.69696 6.81160 7.06414 7.28071 7.50378 8.84313 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.504600 B =14233.637540 C =14511.574228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.286 3.714 3 N -0.572 5.572 4 C 0.228 3.772 5 C 0.017 3.983 6 H 0.107 0.893 7 C -0.104 4.104 8 C -0.105 4.105 9 C 0.041 3.959 10 N -0.527 5.527 11 C 0.081 3.919 12 C -0.113 4.113 13 C 0.494 3.506 14 O -0.604 6.604 15 N -0.611 5.611 16 C 0.078 3.922 17 C 0.258 3.742 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.258 1.258 24 H -0.278 1.278 25 H -0.279 1.279 26 C 0.074 3.926 27 N -0.342 5.342 28 N -0.478 5.478 29 H 0.454 0.546 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.024 0.976 47 H -0.005 1.005 48 H 0.267 0.733 49 H 0.064 0.936 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.709 -3.238 -23.303 33.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.302 5.302 4 C -0.055 4.055 5 C -0.005 4.005 6 H 0.126 0.874 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.086 4.086 10 N -0.252 5.252 11 C -0.047 4.047 12 C -0.153 4.153 13 C 0.283 3.717 14 O -0.486 6.486 15 N -0.342 5.342 16 C -0.064 4.064 17 C 0.136 3.864 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.205 1.205 26 C -0.055 4.055 27 N -0.172 5.172 28 N -0.198 5.198 29 H 0.303 0.697 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.042 0.958 47 H 0.013 0.987 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -23.361 -3.202 -22.754 32.767 hybrid contribution 0.869 -2.224 0.906 2.554 sum -22.491 -5.426 -21.848 31.822 Atomic orbital electron populations 1.20652 0.80069 1.06490 1.06155 1.25292 0.98309 0.82059 0.93527 1.70381 1.01584 1.31194 1.27020 1.24310 0.93622 0.90186 0.97379 1.19515 0.88110 0.96979 0.95865 0.87446 1.21566 0.96574 1.00118 0.95993 1.21555 0.95654 1.00730 0.96322 1.22378 0.96374 0.99592 0.90278 1.61900 1.08372 1.52697 1.02197 1.21591 0.95000 0.96361 0.91775 1.21553 0.97450 1.02356 0.93912 1.21401 0.80408 0.80729 0.89204 1.90634 1.69438 1.36316 1.52221 1.48197 1.34059 1.30329 1.21620 1.21951 1.02024 0.89619 0.92769 1.18748 0.89774 0.95913 0.81964 1.21684 1.09176 1.30352 0.96952 0.92815 1.25897 1.01439 0.97453 0.94594 1.70048 1.39021 1.45548 1.02211 0.85457 0.78584 0.78713 0.77988 1.18259 1.20300 1.20477 1.21890 0.91998 0.94052 0.97538 1.77926 0.98577 1.12739 1.27916 1.47969 1.03411 1.11038 1.57393 0.69725 0.87070 0.87121 0.88164 0.92648 0.90756 0.89692 0.89131 0.88783 0.95735 0.91701 0.96277 0.86782 0.85813 0.91077 0.91671 0.88483 0.95817 0.98652 0.92405 0.91725 0.95601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.51 71.23 0.75 0.46 16 2 C 0.29 4.28 8.24 138.22 1.14 5.42 16 3 N -0.57 -12.78 11.19 -179.74 -2.01 -14.79 16 4 C 0.23 5.40 6.65 138.64 0.92 6.32 16 5 C 0.02 0.36 2.82 -11.48 -0.03 0.32 16 6 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 7 C -0.10 -1.85 5.27 30.67 0.16 -1.69 16 8 C -0.10 -1.58 6.09 30.65 0.19 -1.39 16 9 C 0.04 0.81 5.29 86.33 0.46 1.27 16 10 N -0.53 -12.56 4.66 -896.35 -4.17 -16.73 16 11 C 0.08 2.43 4.25 86.30 0.37 2.80 16 12 C -0.11 -3.21 4.18 29.85 0.12 -3.08 16 13 C 0.49 21.05 7.67 87.66 0.67 21.73 16 14 O -0.60 -32.54 15.56 -3.03 -0.05 -32.59 16 15 N -0.61 -26.49 2.86 -851.14 -2.43 -28.93 16 16 C 0.08 2.32 10.24 127.77 1.31 3.63 16 17 C 0.26 14.32 5.16 85.63 0.44 14.77 16 18 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 19 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 20 C 0.01 0.30 5.46 84.66 0.46 0.76 16 21 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 22 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 C 0.07 1.84 4.73 86.33 0.41 2.25 16 27 N -0.34 -8.02 12.80 -51.34 -0.66 -8.67 16 28 N -0.48 -7.31 7.45 -50.71 -0.38 -7.69 16 29 H 0.45 3.39 8.96 -213.09 -1.91 1.48 16 30 H 0.11 0.07 8.14 -2.38 -0.02 0.06 16 31 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.09 1.62 6.21 -2.38 -0.01 1.61 16 38 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 2.15 7.94 -2.39 -0.02 2.14 16 40 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 41 H 0.11 2.65 5.69 -2.39 -0.01 2.64 16 42 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 2.04 8.07 -2.38 -0.02 2.02 16 45 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 46 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 47 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 48 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 49 H 0.06 1.72 8.01 -2.39 -0.02 1.70 16 50 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -85.35 403.30 -0.75 -86.10 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.97 Total: 10.84 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 7.61 Total: 21.75 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -9.37 Total: -133.87 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.05 Total: -32.59 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -85.35 -0.75 -86.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271567385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.330 kcal (2) G-P(sol) polarization free energy of solvation -85.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds