Wall clock time and date at job start Tue Mar 31 2020 18:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30832 * 125.96275 * 2 1 4 4 C 1.33236 * 109.83083 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.52481 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.50948 * 0.07745 * 5 4 3 7 7 C 1.53129 * 109.53784 * 120.13515 * 5 4 3 8 8 C 1.53123 * 109.15931 * 177.57396 * 7 5 4 9 9 C 1.53039 * 109.31189 * 302.40768 * 8 7 5 10 10 N 1.46842 * 109.52266 * 59.15550 * 9 8 7 11 11 C 1.46910 * 110.99703 * 174.16402 * 10 9 8 12 12 C 1.53001 * 109.46982 * 293.95645 * 11 10 9 13 13 C 1.50696 * 109.46994 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00246 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99804 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99952 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99684 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.46821 * 90.00533 * 17 15 13 19 19 H 1.07992 * 120.00031 * 359.97438 * 18 17 15 20 20 C 1.37884 * 119.99846 * 180.02562 * 18 17 15 21 21 N 1.31518 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47363 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47461 * 119.99515 * 22 20 18 25 25 H 1.48498 * 109.47353 * 240.00096 * 22 20 18 26 26 C 1.46849 * 111.20050 * 298.25785 * 10 9 8 27 27 N 1.30705 * 108.94872 * 0.25940 * 4 3 2 28 28 N 1.34435 * 125.96330 * 179.97438 * 2 1 3 29 29 H 0.96992 * 126.81951 * 0.03186 * 28 2 1 30 30 H 1.09006 * 109.46523 * 90.00437 * 1 2 3 31 31 H 1.09006 * 109.46981 * 210.00045 * 1 2 3 32 32 H 1.08996 * 109.47274 * 330.00746 * 1 2 3 33 33 H 1.09000 * 109.49266 * 57.69087 * 7 5 4 34 34 H 1.08995 * 109.55725 * 297.49834 * 7 5 4 35 35 H 1.09002 * 109.50371 * 182.44317 * 8 7 5 36 36 H 1.09003 * 109.50070 * 62.36477 * 8 7 5 37 37 H 1.08995 * 109.46501 * 179.17754 * 9 8 7 38 38 H 1.09002 * 109.45552 * 299.15457 * 9 8 7 39 39 H 1.08999 * 109.47041 * 53.95578 * 11 10 9 40 40 H 1.08994 * 109.46712 * 173.95817 * 11 10 9 41 41 H 1.09001 * 109.46721 * 300.00112 * 12 11 10 42 42 H 1.09004 * 109.47095 * 59.99745 * 12 11 10 43 43 H 1.08995 * 109.47453 * 90.00034 * 16 15 13 44 44 H 1.09004 * 109.47142 * 209.99873 * 16 15 13 45 45 H 1.09000 * 109.47202 * 329.99858 * 16 15 13 46 46 H 1.09003 * 109.47437 * 210.00137 * 17 15 13 47 47 H 1.09003 * 109.47711 * 330.00346 * 17 15 13 48 48 H 0.97002 * 119.99418 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.46071 * 181.75754 * 26 10 9 50 50 H 1.08995 * 109.46417 * 301.72694 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6236 0.0013 6 1 4.3853 2.6553 0.0027 7 6 5.5877 1.3729 1.2497 8 6 6.8175 2.2843 1.2114 9 6 7.6060 2.0166 -0.0726 10 7 6.7487 2.2720 -1.2372 11 6 7.5118 2.1591 -2.4875 12 6 8.5547 3.2768 -2.5510 13 6 9.3371 3.1614 -3.8338 14 8 9.0857 2.2724 -4.6196 15 7 10.3163 4.0461 -4.1079 16 6 10.6203 5.1195 -3.1584 17 6 11.0772 3.9335 -5.3547 18 6 10.3960 4.7362 -6.4330 19 1 9.4870 5.2757 -6.2118 20 6 10.9327 4.7808 -7.7023 21 7 12.0394 4.1233 -7.9717 22 14 10.0880 5.7750 -9.0392 23 1 8.8689 6.4160 -8.4839 24 1 11.0151 6.8225 -9.5376 25 1 9.7080 4.8767 -10.1589 26 6 5.5860 1.3750 -1.2476 27 7 3.6195 -0.6167 -0.0047 28 7 2.2965 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0005 30 1 -0.3632 -0.0001 -1.0278 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 5.9070 0.3309 1.2690 34 1 5.0001 1.5913 2.1414 35 1 7.4492 2.0797 2.0758 36 1 6.4988 3.3265 1.2321 37 1 8.4742 2.6745 -0.1095 38 1 7.9365 0.9780 -0.0859 39 1 8.0133 1.1919 -2.5210 40 1 6.8335 2.2463 -3.3361 41 1 8.0532 4.2440 -2.5175 42 1 9.2330 3.1896 -1.7022 43 1 11.3773 4.7770 -2.4530 44 1 10.9949 5.9882 -3.6999 45 1 9.7150 5.3921 -2.6160 46 1 12.0864 4.3154 -5.2002 47 1 11.1269 2.8874 -5.6569 48 1 12.4168 4.1544 -8.8648 49 1 4.9871 1.5671 -2.1378 50 1 5.9262 0.3395 -1.2553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271567387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:38 Heat of formation + Delta-G solvation = 42.505643 kcal Electronic energy + Delta-G solvation = -28613.839582 eV Core-core repulsion = 24677.354877 eV Total energy + Delta-G solvation = -3936.484705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50713 -39.47611 -38.61103 -35.05394 -34.62009 -33.11549 -32.70509 -32.56353 -31.00784 -30.22095 -28.21338 -27.67246 -25.82062 -24.96638 -24.17536 -22.91604 -22.07755 -21.36759 -20.44711 -19.60778 -18.24942 -18.22085 -16.66400 -16.49310 -16.08508 -15.50191 -15.40404 -15.33154 -14.81347 -14.70828 -14.50044 -14.26237 -14.01927 -13.81511 -13.52098 -13.29196 -13.23368 -13.07164 -12.50273 -12.30540 -12.19927 -12.13522 -12.02348 -11.78152 -11.62774 -11.49335 -11.15656 -11.12782 -10.87282 -10.80472 -10.73899 -10.55273 -10.45562 -10.31777 -10.28081 -10.11799 -9.73820 -9.56474 -8.82891 -8.40460 -8.34550 -7.58111 -6.00910 -4.05251 1.24277 2.27711 2.53333 3.32373 3.39458 3.42205 3.44977 3.52612 3.81049 4.17955 4.25293 4.40901 4.49024 4.63038 4.69618 4.82743 4.88967 4.92672 5.11918 5.21556 5.26259 5.27491 5.31063 5.33392 5.39822 5.42950 5.53328 5.59064 5.67191 5.74906 5.80536 5.81354 5.89332 5.92816 5.97319 6.01753 6.09466 6.15328 6.20843 6.25334 6.29270 6.68256 7.03062 7.05401 7.11944 7.48951 7.60062 7.78576 7.96132 8.27838 8.48472 8.95033 9.16294 9.59801 11.07176 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002072 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.132229 B =13513.024538 C =14591.333662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.280 3.720 3 N -0.536 5.536 4 C 0.241 3.759 5 C 0.010 3.990 6 H 0.107 0.893 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.047 3.953 10 N -0.537 5.537 11 C 0.074 3.926 12 C -0.134 4.134 13 C 0.504 3.496 14 O -0.546 6.546 15 N -0.604 5.604 16 C 0.084 3.916 17 C 0.244 3.756 18 C -0.523 4.523 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.069 3.931 27 N -0.310 5.310 28 N -0.486 5.486 29 H 0.439 0.561 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.262 0.738 49 H 0.077 0.923 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 -7.140 23.093 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.265 5.265 4 C -0.042 4.042 5 C -0.012 4.012 6 H 0.125 0.875 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.080 4.080 10 N -0.262 5.262 11 C -0.053 4.053 12 C -0.175 4.175 13 C 0.290 3.710 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.125 3.875 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.060 4.060 27 N -0.139 5.139 28 N -0.204 5.204 29 H 0.284 0.716 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.895 -7.179 22.543 30.278 hybrid contribution -0.465 -0.909 -0.905 1.364 sum -19.360 -8.088 21.639 30.140 Atomic orbital electron populations 1.20402 0.83622 1.04977 1.04688 1.24434 0.96664 0.82922 0.95818 1.70393 1.01439 1.29467 1.25234 1.24176 0.93078 0.89978 0.96991 1.19581 0.88270 0.97131 0.96178 0.87460 1.21609 0.96351 1.00515 0.96359 1.21575 0.96132 1.00546 0.96913 1.22209 0.95933 0.99755 0.90147 1.61847 1.08571 1.53006 1.02759 1.21779 0.95352 0.97265 0.90944 1.21646 0.97866 1.01151 0.96799 1.20323 0.80789 0.82269 0.87588 1.90663 1.66931 1.34742 1.50096 1.48154 1.35465 1.27937 1.22031 1.21633 0.99987 0.91591 0.92822 1.19282 0.90445 0.98748 0.79057 1.21487 1.09989 1.29861 0.94896 0.92388 1.24956 0.95050 0.95825 0.98457 1.69951 1.20079 1.42149 1.21312 0.86437 0.79479 0.79740 0.81735 1.19770 1.20990 1.20914 1.21973 0.92003 0.94941 0.97090 1.78018 0.96407 1.12528 1.26905 1.48022 1.04448 1.10017 1.57893 0.71553 0.88888 0.89912 0.88280 0.91526 0.91660 0.91152 0.90635 0.90068 0.94727 0.93911 0.89838 0.88601 0.89763 0.93887 0.90885 0.92235 0.95077 0.93906 0.92828 0.90448 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.28 2.30 8.24 -155.69 -1.28 1.01 16 3 N -0.54 -6.20 11.19 -8.16 -0.09 -6.29 16 4 C 0.24 2.86 6.65 -156.87 -1.04 1.81 16 5 C 0.01 0.11 2.82 -91.69 -0.26 -0.15 16 6 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.11 -1.03 5.27 -26.60 -0.14 -1.17 16 8 C -0.11 -0.98 6.09 -26.65 -0.16 -1.14 16 9 C 0.05 0.49 5.29 -3.84 -0.02 0.47 16 10 N -0.54 -6.61 4.66 -234.67 -1.09 -7.70 16 11 C 0.07 1.10 4.25 -3.82 -0.02 1.09 16 12 C -0.13 -2.02 4.19 -27.88 -0.12 -2.14 16 13 C 0.50 10.65 7.67 -10.99 -0.08 10.57 16 14 O -0.55 -14.01 15.56 5.56 0.09 -13.92 16 15 N -0.60 -13.09 2.86 -182.96 -0.52 -13.61 16 16 C 0.08 1.35 10.24 59.85 0.61 1.96 16 17 C 0.24 6.54 5.16 -5.19 -0.03 6.51 16 18 C -0.52 -15.17 9.39 -34.44 -0.32 -15.49 16 19 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 22 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.07 0.84 4.73 -3.83 -0.02 0.82 16 27 N -0.31 -3.60 12.80 32.42 0.41 -3.19 16 28 N -0.49 -3.92 7.45 32.62 0.24 -3.68 16 29 H 0.44 1.89 8.96 -182.34 -1.63 0.26 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.80 6.22 -51.93 -0.32 0.48 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 41 H 0.10 1.35 7.40 -51.93 -0.38 0.96 16 42 H 0.08 1.08 6.40 -51.93 -0.33 0.74 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 45 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 46 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 47 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 50 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 403.32 15.07 6.08 6.08 Total: -1.00 -37.14 403.32 -11.44 -48.58 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -9.68 Total: -3.09 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -2.60 Total: 5.90 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.31 Total: -60.81 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.14 -11.44 -48.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271567387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.090 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds