Wall clock time and date at job start Tue Mar 31 2020 18:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30832 * 125.96275 * 2 1 4 4 C 1.33236 * 109.83083 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.52481 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.50948 * 0.07745 * 5 4 3 7 7 C 1.53129 * 109.53784 * 120.13515 * 5 4 3 8 8 C 1.53123 * 109.15931 * 177.57396 * 7 5 4 9 9 C 1.53039 * 109.31189 * 302.40768 * 8 7 5 10 10 N 1.46842 * 109.52266 * 59.15550 * 9 8 7 11 11 C 1.46910 * 110.99703 * 174.16402 * 10 9 8 12 12 C 1.53001 * 109.46982 * 293.95645 * 11 10 9 13 13 C 1.50696 * 109.46994 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00246 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99804 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99952 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99684 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.46821 * 90.00533 * 17 15 13 19 19 H 1.07992 * 120.00031 * 359.97438 * 18 17 15 20 20 C 1.37884 * 119.99846 * 180.02562 * 18 17 15 21 21 N 1.31518 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47363 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47461 * 119.99515 * 22 20 18 25 25 H 1.48498 * 109.47353 * 240.00096 * 22 20 18 26 26 C 1.46849 * 111.20050 * 298.25785 * 10 9 8 27 27 N 1.30705 * 108.94872 * 0.25940 * 4 3 2 28 28 N 1.34435 * 125.96330 * 179.97438 * 2 1 3 29 29 H 0.96992 * 126.81951 * 0.03186 * 28 2 1 30 30 H 1.09006 * 109.46523 * 90.00437 * 1 2 3 31 31 H 1.09006 * 109.46981 * 210.00045 * 1 2 3 32 32 H 1.08996 * 109.47274 * 330.00746 * 1 2 3 33 33 H 1.09000 * 109.49266 * 57.69087 * 7 5 4 34 34 H 1.08995 * 109.55725 * 297.49834 * 7 5 4 35 35 H 1.09002 * 109.50371 * 182.44317 * 8 7 5 36 36 H 1.09003 * 109.50070 * 62.36477 * 8 7 5 37 37 H 1.08995 * 109.46501 * 179.17754 * 9 8 7 38 38 H 1.09002 * 109.45552 * 299.15457 * 9 8 7 39 39 H 1.08999 * 109.47041 * 53.95578 * 11 10 9 40 40 H 1.08994 * 109.46712 * 173.95817 * 11 10 9 41 41 H 1.09001 * 109.46721 * 300.00112 * 12 11 10 42 42 H 1.09004 * 109.47095 * 59.99745 * 12 11 10 43 43 H 1.08995 * 109.47453 * 90.00034 * 16 15 13 44 44 H 1.09004 * 109.47142 * 209.99873 * 16 15 13 45 45 H 1.09000 * 109.47202 * 329.99858 * 16 15 13 46 46 H 1.09003 * 109.47437 * 210.00137 * 17 15 13 47 47 H 1.09003 * 109.47711 * 330.00346 * 17 15 13 48 48 H 0.97002 * 119.99418 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.46071 * 181.75754 * 26 10 9 50 50 H 1.08995 * 109.46417 * 301.72694 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6236 0.0013 6 1 4.3853 2.6553 0.0027 7 6 5.5877 1.3729 1.2497 8 6 6.8175 2.2843 1.2114 9 6 7.6060 2.0166 -0.0726 10 7 6.7487 2.2720 -1.2372 11 6 7.5118 2.1591 -2.4875 12 6 8.5547 3.2768 -2.5510 13 6 9.3371 3.1614 -3.8338 14 8 9.0857 2.2724 -4.6196 15 7 10.3163 4.0461 -4.1079 16 6 10.6203 5.1195 -3.1584 17 6 11.0772 3.9335 -5.3547 18 6 10.3960 4.7362 -6.4330 19 1 9.4870 5.2757 -6.2118 20 6 10.9327 4.7808 -7.7023 21 7 12.0394 4.1233 -7.9717 22 14 10.0880 5.7750 -9.0392 23 1 8.8689 6.4160 -8.4839 24 1 11.0151 6.8225 -9.5376 25 1 9.7080 4.8767 -10.1589 26 6 5.5860 1.3750 -1.2476 27 7 3.6195 -0.6167 -0.0047 28 7 2.2965 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0005 30 1 -0.3632 -0.0001 -1.0278 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 5.9070 0.3309 1.2690 34 1 5.0001 1.5913 2.1414 35 1 7.4492 2.0797 2.0758 36 1 6.4988 3.3265 1.2321 37 1 8.4742 2.6745 -0.1095 38 1 7.9365 0.9780 -0.0859 39 1 8.0133 1.1919 -2.5210 40 1 6.8335 2.2463 -3.3361 41 1 8.0532 4.2440 -2.5175 42 1 9.2330 3.1896 -1.7022 43 1 11.3773 4.7770 -2.4530 44 1 10.9949 5.9882 -3.6999 45 1 9.7150 5.3921 -2.6160 46 1 12.0864 4.3154 -5.2002 47 1 11.1269 2.8874 -5.6569 48 1 12.4168 4.1544 -8.8648 49 1 4.9871 1.5671 -2.1378 50 1 5.9262 0.3395 -1.2553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271567387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:37 Heat of formation + Delta-G solvation = 16.084960 kcal Electronic energy + Delta-G solvation = -28614.985269 eV Core-core repulsion = 24677.354877 eV Total energy + Delta-G solvation = -3937.630392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.22854 -40.82859 -39.88073 -36.63708 -35.82284 -34.72603 -33.85441 -33.38008 -31.94043 -31.35802 -29.56180 -28.75056 -27.30939 -26.22638 -25.25023 -24.42850 -23.12747 -22.23669 -21.34978 -20.44936 -19.84553 -18.90410 -18.70057 -18.02833 -17.11766 -16.83083 -16.72405 -16.59561 -16.23631 -15.76508 -15.46660 -15.44812 -15.03809 -14.74931 -14.52413 -14.41106 -13.99585 -13.80263 -13.71058 -13.64442 -13.54127 -13.42707 -13.26053 -13.13884 -12.84158 -12.78611 -12.73202 -12.44809 -12.37973 -12.20988 -12.12684 -11.68525 -11.64863 -11.60708 -11.38176 -11.10130 -11.04916 -10.65413 -10.59682 -10.46649 -9.40512 -9.38067 -8.22845 -6.37606 0.54991 1.35680 1.38241 1.50344 1.69780 1.76486 1.86073 2.28300 2.41094 2.77266 3.06306 3.15237 3.53143 3.75668 3.78689 3.87849 3.93612 4.04137 4.08573 4.20656 4.31787 4.36384 4.44754 4.51962 4.63695 4.65876 4.68528 4.69157 4.74821 4.77873 4.91234 4.92676 4.98334 5.02595 5.02798 5.04936 5.08162 5.11636 5.19833 5.23560 5.24787 5.36385 5.47087 5.57133 5.85443 5.95928 6.06437 6.09837 6.18589 6.70240 6.81238 7.06173 7.28239 7.50382 8.84308 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002072 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.132229 B =13513.024538 C =14591.333662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.286 3.714 3 N -0.573 5.573 4 C 0.228 3.772 5 C 0.016 3.984 6 H 0.105 0.895 7 C -0.103 4.103 8 C -0.106 4.106 9 C 0.042 3.958 10 N -0.530 5.530 11 C 0.082 3.918 12 C -0.113 4.113 13 C 0.494 3.506 14 O -0.604 6.604 15 N -0.611 5.611 16 C 0.078 3.922 17 C 0.257 3.743 18 C -0.541 4.541 19 H 0.053 0.947 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.282 1.282 26 C 0.075 3.925 27 N -0.341 5.341 28 N -0.478 5.478 29 H 0.454 0.546 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.024 0.976 47 H -0.004 1.004 48 H 0.267 0.733 49 H 0.061 0.939 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -5.763 25.172 33.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.303 5.303 4 C -0.055 4.055 5 C -0.005 4.005 6 H 0.123 0.877 7 C -0.142 4.142 8 C -0.143 4.143 9 C -0.085 4.085 10 N -0.254 5.254 11 C -0.047 4.047 12 C -0.153 4.153 13 C 0.283 3.717 14 O -0.486 6.486 15 N -0.342 5.342 16 C -0.064 4.064 17 C 0.136 3.864 18 C -0.579 4.579 19 H 0.071 0.929 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.208 1.208 26 C -0.054 4.054 27 N -0.170 5.170 28 N -0.198 5.198 29 H 0.303 0.697 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.042 0.958 47 H 0.014 0.986 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -20.542 -5.794 24.680 32.629 hybrid contribution 0.001 -1.426 -1.524 2.086 sum -20.541 -7.220 23.157 31.785 Atomic orbital electron populations 1.20652 0.80093 1.06669 1.05961 1.25284 0.98301 0.82067 0.93539 1.70382 1.01654 1.31248 1.27023 1.24309 0.93599 0.90207 0.97378 1.19516 0.88151 0.96894 0.95980 0.87658 1.21566 0.96606 1.00212 0.95811 1.21561 0.95644 1.00625 0.96493 1.22379 0.96376 0.99759 0.90024 1.61881 1.08465 1.52816 1.02263 1.21582 0.94948 0.96462 0.91690 1.21551 0.97578 1.02041 0.94097 1.21402 0.80382 0.80976 0.88979 1.90633 1.68472 1.37042 1.52449 1.48198 1.35064 1.29625 1.21324 1.21958 1.02735 0.89598 0.92125 1.18758 0.90830 0.95456 0.81401 1.21745 1.09969 1.30174 0.96048 0.92862 1.25902 0.95700 0.96889 1.00967 1.70066 1.21402 1.43284 1.22158 0.85342 0.78694 0.78337 0.78279 1.19095 1.19247 1.20828 1.21877 0.91994 0.94112 0.97442 1.77913 0.98558 1.12673 1.27903 1.47963 1.03410 1.11026 1.57384 0.69703 0.87608 0.86825 0.87953 0.92497 0.90804 0.88971 0.89894 0.88630 0.95451 0.95791 0.92203 0.86347 0.86265 0.90983 0.91702 0.88491 0.95784 0.98617 0.92422 0.92026 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.29 4.36 8.24 138.22 1.14 5.50 16 3 N -0.57 -13.05 11.19 -179.73 -2.01 -15.06 16 4 C 0.23 5.44 6.65 138.63 0.92 6.36 16 5 C 0.02 0.34 2.82 -11.49 -0.03 0.31 16 6 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 7 C -0.10 -1.81 5.27 30.68 0.16 -1.64 16 8 C -0.11 -1.53 6.09 30.65 0.19 -1.35 16 9 C 0.04 0.79 5.29 86.33 0.46 1.25 16 10 N -0.53 -12.61 4.66 -896.36 -4.17 -16.79 16 11 C 0.08 2.44 4.25 86.30 0.37 2.81 16 12 C -0.11 -3.20 4.19 29.85 0.12 -3.08 16 13 C 0.49 21.04 7.67 87.66 0.67 21.71 16 14 O -0.60 -32.49 15.56 -3.03 -0.05 -32.53 16 15 N -0.61 -26.49 2.86 -851.14 -2.43 -28.92 16 16 C 0.08 2.31 10.24 127.77 1.31 3.62 16 17 C 0.26 14.29 5.16 85.63 0.44 14.73 16 18 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 19 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 20 C 0.00 0.24 5.46 84.66 0.46 0.70 16 21 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 22 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 C 0.08 1.87 4.73 86.32 0.41 2.27 16 27 N -0.34 -7.97 12.80 -51.34 -0.66 -8.63 16 28 N -0.48 -7.34 7.45 -50.70 -0.38 -7.72 16 29 H 0.45 3.38 8.96 -213.11 -1.91 1.47 16 30 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.11 -0.20 8.14 -2.38 -0.02 -0.22 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.53 6.22 -2.39 -0.01 1.52 16 38 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 40 H 0.06 2.06 7.94 -2.39 -0.02 2.04 16 41 H 0.12 2.92 7.40 -2.39 -0.02 2.90 16 42 H 0.12 2.60 6.40 -2.38 -0.02 2.59 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 2.04 8.07 -2.38 -0.02 2.02 16 45 H 0.10 2.16 6.44 -2.39 -0.02 2.14 16 46 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 47 H 0.00 -0.28 7.42 -2.39 -0.02 -0.29 16 48 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.06 1.69 8.01 -2.39 -0.02 1.67 16 50 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -85.62 403.32 -0.75 -86.37 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -0.97 Total: 10.56 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 7.61 Total: 21.85 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -9.36 Total: -134.25 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.53 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -85.62 -0.75 -86.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271567387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.452 kcal (2) G-P(sol) polarization free energy of solvation -85.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds