Wall clock time and date at job start Tue Mar 31 2020 20:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52998 * 109.47130 * 120.00002 * 2 1 3 5 5 C 1.52995 * 109.47275 * 65.00131 * 4 2 1 6 6 N 1.46498 * 109.47527 * 180.02562 * 5 4 2 7 7 C 1.46509 * 119.99878 * 270.00169 * 6 5 4 8 8 C 1.50705 * 109.46629 * 269.99955 * 7 6 5 9 9 H 1.07997 * 119.99974 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99596 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00394 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99951 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46982 * 89.99521 * 12 10 8 14 14 H 1.48500 * 109.47143 * 209.99688 * 12 10 8 15 15 H 1.48500 * 109.47002 * 329.99786 * 12 10 8 16 16 C 1.34769 * 120.00281 * 89.99251 * 6 5 4 17 17 O 1.21571 * 119.99954 * 0.02562 * 16 6 5 18 18 N 1.34773 * 120.00290 * 179.97438 * 16 6 5 19 19 C 1.39088 * 120.00538 * 185.08229 * 18 16 6 20 20 C 1.39043 * 120.47955 * 174.84235 * 19 18 16 21 21 C 1.39213 * 118.27476 * 179.97438 * 20 19 18 22 22 N 1.38620 * 120.49536 * 179.97438 * 21 20 19 23 23 C 1.46491 * 119.99722 * 4.99960 * 22 21 20 24 24 C 1.46500 * 119.99887 * 184.99826 * 22 21 20 25 25 N 1.33160 * 119.01419 * 0.02562 * 21 20 19 26 26 C 1.31727 * 120.86242 * 359.95878 * 25 21 20 27 27 N 1.31758 * 121.90901 * 0.04377 * 26 25 21 28 28 H 1.09003 * 109.46735 * 59.99921 * 1 2 3 29 29 H 1.08998 * 109.47296 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47032 * 300.00471 * 1 2 3 31 31 H 1.09004 * 109.47334 * 240.00250 * 2 1 3 32 32 H 1.08992 * 109.47490 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47163 * 300.00281 * 3 2 1 34 34 H 1.08997 * 109.46981 * 59.99576 * 3 2 1 35 35 H 1.09001 * 109.47273 * 304.99760 * 4 2 1 36 36 H 1.09006 * 109.47251 * 184.99961 * 4 2 1 37 37 H 1.09001 * 109.47273 * 59.99629 * 5 4 2 38 38 H 1.08997 * 109.47095 * 300.00108 * 5 4 2 39 39 H 1.09001 * 109.47050 * 29.99278 * 7 6 5 40 40 H 1.08992 * 109.47324 * 149.99828 * 7 6 5 41 41 H 0.96996 * 120.00318 * 180.02562 * 11 10 8 42 42 H 0.97007 * 119.99875 * 5.09023 * 18 16 6 43 43 H 1.08001 * 120.86755 * 359.71222 * 20 19 18 44 44 H 1.09006 * 109.47288 * 90.00256 * 23 22 21 45 45 H 1.08997 * 109.47203 * 210.00001 * 23 22 21 46 46 H 1.09001 * 109.47487 * 330.00396 * 23 22 21 47 47 H 1.09005 * 109.46517 * 90.00369 * 24 22 21 48 48 H 1.09002 * 109.46981 * 209.99406 * 24 22 21 49 49 H 1.08996 * 109.47543 * 330.00277 * 24 22 21 50 50 H 1.08004 * 119.04752 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3844 7 6 3.4514 -3.5040 2.3831 8 6 3.3408 -4.9312 1.9119 9 1 2.3774 -5.3373 1.6410 10 6 4.4694 -5.7187 1.8277 11 7 5.6424 -5.2243 2.1581 12 14 4.3323 -7.4880 1.2444 13 1 4.4907 -7.5363 -0.2314 14 1 5.3960 -8.3037 1.8834 15 1 3.0012 -8.0304 1.6173 16 6 1.3500 -2.9525 3.4863 17 8 0.2476 -2.4400 3.4873 18 7 1.7985 -3.5882 4.5868 19 6 0.9622 -3.7492 5.6865 20 6 1.3765 -4.4950 6.7844 21 6 0.5028 -4.6259 7.8603 22 7 0.8685 -5.3594 8.9782 23 6 2.2213 -5.9119 9.0814 24 6 -0.0979 -5.5821 10.0565 25 7 -0.6898 -4.0368 7.7992 26 6 -1.0449 -3.3381 6.7404 27 7 -0.2462 -3.1914 5.7029 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 2.0698 -2.6549 0.3002 38 1 0.5490 -2.2724 1.1420 39 1 4.1091 -2.9502 1.7131 40 1 3.8618 -3.4854 3.3926 41 1 6.4364 -5.7782 2.0985 42 1 2.7047 -3.9334 4.6120 43 1 2.3492 -4.9641 6.8005 44 1 2.8736 -5.1872 9.5689 45 1 2.1952 -6.8298 9.6686 46 1 2.6020 -6.1296 8.0835 47 1 -0.6542 -6.4992 9.8620 48 1 0.4308 -5.6723 11.0054 49 1 -0.7893 -4.7409 10.1043 50 1 -2.0192 -2.8723 6.7221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289709828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:22 Heat of formation + Delta-G solvation = 34.381420 kcal Electronic energy + Delta-G solvation = -29534.186536 eV Core-core repulsion = 25597.349538 eV Total energy + Delta-G solvation = -3936.836998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -40.82971 -39.42083 -37.14166 -36.54868 -34.79246 -34.61805 -32.60521 -31.77298 -30.76334 -29.03335 -28.19498 -27.01107 -26.93636 -25.70500 -23.76714 -23.22154 -23.09422 -21.46357 -19.73982 -19.45080 -18.21497 -17.24903 -16.68541 -16.55309 -15.76999 -15.50482 -15.20980 -15.00971 -14.80966 -14.68820 -14.50247 -14.15845 -13.97311 -13.80377 -13.50209 -13.15640 -13.07485 -12.71042 -12.49508 -12.34802 -12.30502 -12.12925 -12.03837 -11.76319 -11.46818 -11.17270 -11.06586 -10.95607 -10.81262 -10.65843 -10.46905 -10.33557 -10.25383 -10.20082 -10.00603 -9.78204 -9.55985 -8.67142 -8.48712 -8.39731 -7.83732 -7.65001 -6.26200 -4.34750 1.42650 1.77172 2.77688 3.16357 3.17654 3.25222 3.30199 3.86389 4.22766 4.38881 4.42969 4.52928 4.81621 5.05635 5.07979 5.11019 5.13537 5.17047 5.18293 5.21124 5.33172 5.52323 5.52730 5.59365 5.67949 5.71416 5.77750 5.80935 5.88274 5.95161 6.02559 6.06480 6.16081 6.29585 6.33340 6.38247 6.44283 6.63803 6.67174 6.69775 6.75526 6.97537 7.04031 7.22155 7.33143 7.53364 7.69797 7.81540 7.96283 8.45108 8.69811 8.82339 9.28574 9.36636 10.79564 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007737 B = 0.004017 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.057869 B = 6968.749086 C = 9899.696429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.129 4.129 5 C 0.138 3.862 6 N -0.610 5.610 7 C 0.239 3.761 8 C -0.540 4.540 9 H 0.062 0.938 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.698 3.302 17 O -0.552 6.552 18 N -0.655 5.655 19 C 0.462 3.538 20 C -0.340 4.340 21 C 0.451 3.549 22 N -0.611 5.611 23 C 0.092 3.908 24 C 0.100 3.900 25 N -0.607 5.607 26 C 0.358 3.642 27 N -0.545 5.545 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.026 0.974 41 H 0.266 0.734 42 H 0.424 0.576 43 H 0.141 0.859 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 3.644 8.631 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.345 5.345 7 C 0.119 3.881 8 C -0.579 4.579 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.399 3.601 17 O -0.426 6.426 18 N -0.303 5.303 19 C 0.222 3.778 20 C -0.372 4.372 21 C 0.211 3.789 22 N -0.326 5.326 23 C -0.051 4.051 24 C -0.043 4.043 25 N -0.336 5.336 26 C 0.067 3.933 27 N -0.270 5.270 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.265 0.735 43 H 0.158 0.842 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.001 4.289 8.598 11.889 hybrid contribution 1.592 -1.752 -0.307 2.388 sum -5.409 2.536 8.291 10.219 Atomic orbital electron populations 1.21872 0.95295 1.02122 1.01114 1.21043 0.95884 0.95852 0.98474 1.21821 1.00839 0.96272 1.01253 1.22027 1.00952 0.96128 0.97677 1.21247 0.99859 0.90568 0.86874 1.47473 1.19179 1.56670 1.11191 1.19339 0.78041 0.93126 0.97632 1.21547 0.94244 0.96339 1.45770 0.91979 1.24941 0.95045 0.98795 0.94911 1.69917 0.98485 1.36955 1.47535 0.86518 0.77924 0.84121 0.79087 1.20409 1.21040 1.19809 1.15911 0.84341 0.79577 0.80257 1.90946 1.19386 1.49973 1.82261 1.43041 1.16653 1.58123 1.12512 1.18110 0.87728 0.86922 0.85018 1.21337 1.05103 1.14223 0.96504 1.18048 0.88655 0.86603 0.85549 1.46085 1.13240 1.55360 1.17915 1.21750 0.81893 0.98260 1.03172 1.21563 0.92466 1.02023 0.88228 1.67882 1.17661 1.17792 1.30222 1.24556 0.97865 0.88765 0.82144 1.68523 1.03850 1.25888 1.28709 0.93393 0.92208 0.92707 0.91230 0.92835 0.93110 0.92914 0.91886 0.91962 0.90543 0.90656 0.94092 0.95584 0.92446 0.73515 0.84160 0.92777 0.91014 0.90572 0.93499 0.91975 0.90056 0.79075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.15 0.33 -1.56 16 2 C -0.09 -1.24 2.92 -90.62 -0.26 -1.50 16 3 C -0.14 -1.69 9.19 37.16 0.34 -1.34 16 4 C -0.13 -2.07 5.01 -26.73 -0.13 -2.20 16 5 C 0.14 2.55 5.16 -4.05 -0.02 2.53 16 6 N -0.61 -12.82 2.46 -180.81 -0.44 -13.27 16 7 C 0.24 5.46 4.97 -5.19 -0.03 5.43 16 8 C -0.54 -13.64 9.39 -34.44 -0.32 -13.96 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.54 13.29 55.43 0.74 -22.80 16 12 Si 0.90 20.15 29.54 -169.99 -5.02 15.12 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.70 15.25 8.24 -86.93 -0.72 14.54 16 17 O -0.55 -13.04 14.22 5.30 0.08 -12.96 16 18 N -0.65 -13.06 5.26 -15.73 -0.08 -13.15 16 19 C 0.46 8.77 7.45 -154.37 -1.15 7.62 16 20 C -0.34 -5.49 9.19 -38.92 -0.36 -5.84 16 21 C 0.45 6.88 7.38 -154.71 -1.14 5.74 16 22 N -0.61 -7.36 3.38 -189.55 -0.64 -8.00 16 23 C 0.09 0.85 10.30 59.84 0.62 1.46 16 24 C 0.10 0.96 10.51 59.85 0.63 1.59 16 25 N -0.61 -9.49 9.23 -13.87 -0.13 -9.62 16 26 C 0.36 5.77 12.28 -92.24 -1.13 4.64 16 27 N -0.54 -10.62 8.04 -13.81 -0.11 -10.73 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 38 H 0.08 1.42 5.84 -51.93 -0.30 1.12 16 39 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 40 H 0.03 0.61 6.29 -51.93 -0.33 0.28 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 42 H 0.42 8.14 6.41 -40.82 -0.26 7.88 16 43 H 0.14 1.99 6.15 -52.49 -0.32 1.67 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 46 H 0.08 0.74 6.04 -51.93 -0.31 0.42 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 49 H 0.08 0.85 7.33 -51.93 -0.38 0.47 16 50 H 0.19 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -30.84 405.65 -11.07 -41.91 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.12 Total: 8.65 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: -3.44 Total: 18.73 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -0.67 Total: -77.56 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.84 -11.07 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289709828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.291 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds