Wall clock time and date at job start Tue Mar 31 2020 20:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52998 * 109.47130 * 120.00002 * 2 1 3 5 5 C 1.52995 * 109.47275 * 65.00131 * 4 2 1 6 6 N 1.46498 * 109.47527 * 180.02562 * 5 4 2 7 7 C 1.46509 * 119.99878 * 270.00169 * 6 5 4 8 8 C 1.50705 * 109.46629 * 269.99955 * 7 6 5 9 9 H 1.07997 * 119.99974 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99596 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00394 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99951 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46982 * 89.99521 * 12 10 8 14 14 H 1.48500 * 109.47143 * 209.99688 * 12 10 8 15 15 H 1.48500 * 109.47002 * 329.99786 * 12 10 8 16 16 C 1.34769 * 120.00281 * 89.99251 * 6 5 4 17 17 O 1.21571 * 119.99954 * 0.02562 * 16 6 5 18 18 N 1.34773 * 120.00290 * 179.97438 * 16 6 5 19 19 C 1.39088 * 120.00538 * 185.08229 * 18 16 6 20 20 C 1.39043 * 120.47955 * 174.84235 * 19 18 16 21 21 C 1.39213 * 118.27476 * 179.97438 * 20 19 18 22 22 N 1.38620 * 120.49536 * 179.97438 * 21 20 19 23 23 C 1.46491 * 119.99722 * 4.99960 * 22 21 20 24 24 C 1.46500 * 119.99887 * 184.99826 * 22 21 20 25 25 N 1.33160 * 119.01419 * 0.02562 * 21 20 19 26 26 C 1.31727 * 120.86242 * 359.95878 * 25 21 20 27 27 N 1.31758 * 121.90901 * 0.04377 * 26 25 21 28 28 H 1.09003 * 109.46735 * 59.99921 * 1 2 3 29 29 H 1.08998 * 109.47296 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47032 * 300.00471 * 1 2 3 31 31 H 1.09004 * 109.47334 * 240.00250 * 2 1 3 32 32 H 1.08992 * 109.47490 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47163 * 300.00281 * 3 2 1 34 34 H 1.08997 * 109.46981 * 59.99576 * 3 2 1 35 35 H 1.09001 * 109.47273 * 304.99760 * 4 2 1 36 36 H 1.09006 * 109.47251 * 184.99961 * 4 2 1 37 37 H 1.09001 * 109.47273 * 59.99629 * 5 4 2 38 38 H 1.08997 * 109.47095 * 300.00108 * 5 4 2 39 39 H 1.09001 * 109.47050 * 29.99278 * 7 6 5 40 40 H 1.08992 * 109.47324 * 149.99828 * 7 6 5 41 41 H 0.96996 * 120.00318 * 180.02562 * 11 10 8 42 42 H 0.97007 * 119.99875 * 5.09023 * 18 16 6 43 43 H 1.08001 * 120.86755 * 359.71222 * 20 19 18 44 44 H 1.09006 * 109.47288 * 90.00256 * 23 22 21 45 45 H 1.08997 * 109.47203 * 210.00001 * 23 22 21 46 46 H 1.09001 * 109.47487 * 330.00396 * 23 22 21 47 47 H 1.09005 * 109.46517 * 90.00369 * 24 22 21 48 48 H 1.09002 * 109.46981 * 209.99406 * 24 22 21 49 49 H 1.08996 * 109.47543 * 330.00277 * 24 22 21 50 50 H 1.08004 * 119.04752 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3844 7 6 3.4514 -3.5040 2.3831 8 6 3.3408 -4.9312 1.9119 9 1 2.3774 -5.3373 1.6410 10 6 4.4694 -5.7187 1.8277 11 7 5.6424 -5.2243 2.1581 12 14 4.3323 -7.4880 1.2444 13 1 4.4907 -7.5363 -0.2314 14 1 5.3960 -8.3037 1.8834 15 1 3.0012 -8.0304 1.6173 16 6 1.3500 -2.9525 3.4863 17 8 0.2476 -2.4400 3.4873 18 7 1.7985 -3.5882 4.5868 19 6 0.9622 -3.7492 5.6865 20 6 1.3765 -4.4950 6.7844 21 6 0.5028 -4.6259 7.8603 22 7 0.8685 -5.3594 8.9782 23 6 2.2213 -5.9119 9.0814 24 6 -0.0979 -5.5821 10.0565 25 7 -0.6898 -4.0368 7.7992 26 6 -1.0449 -3.3381 6.7404 27 7 -0.2462 -3.1914 5.7029 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 2.0698 -2.6549 0.3002 38 1 0.5490 -2.2724 1.1420 39 1 4.1091 -2.9502 1.7131 40 1 3.8618 -3.4854 3.3926 41 1 6.4364 -5.7782 2.0985 42 1 2.7047 -3.9334 4.6120 43 1 2.3492 -4.9641 6.8005 44 1 2.8736 -5.1872 9.5689 45 1 2.1952 -6.8298 9.6686 46 1 2.6020 -6.1296 8.0835 47 1 -0.6542 -6.4992 9.8620 48 1 0.4308 -5.6723 11.0054 49 1 -0.7893 -4.7409 10.1043 50 1 -2.0192 -2.8723 6.7221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289709828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:21 Heat of formation + Delta-G solvation = 19.962981 kcal Electronic energy + Delta-G solvation = -29534.811766 eV Core-core repulsion = 25597.349538 eV Total energy + Delta-G solvation = -3937.462229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.17964 -40.95486 -38.31530 -37.73035 -36.40713 -36.11442 -34.50323 -33.04473 -32.01374 -30.48272 -29.12023 -28.69539 -27.97952 -26.78692 -25.06739 -25.01823 -24.44521 -22.71155 -21.01410 -20.84444 -19.58060 -18.87803 -18.39780 -17.97633 -17.13589 -16.76002 -16.52708 -16.38650 -16.21082 -16.01767 -15.95041 -15.35546 -15.16841 -14.96765 -14.82507 -14.54957 -14.38659 -14.30386 -13.78356 -13.49168 -13.40384 -13.11541 -13.09677 -12.89514 -12.86844 -12.76655 -12.64674 -12.48253 -12.26386 -12.06963 -11.91980 -11.59139 -11.58283 -11.50810 -11.45206 -11.37658 -11.18539 -10.62716 -9.90133 -9.86859 -9.34205 -8.87432 -8.22424 -6.37868 0.12683 0.48592 1.39168 1.42296 1.49297 1.54022 1.94748 2.23409 2.39020 2.82709 3.07076 3.08684 3.39547 3.61996 3.93426 3.97119 3.99795 4.10696 4.21790 4.30221 4.35497 4.40737 4.52948 4.58975 4.59521 4.72200 4.77088 4.80011 4.81815 4.88827 4.90810 4.95488 4.97025 5.05003 5.10312 5.13948 5.15220 5.18048 5.34450 5.43444 5.50531 5.56708 5.65072 5.65813 5.82182 6.00131 6.01562 6.22711 6.45209 6.65882 6.93527 7.33111 7.43502 7.65894 8.82000 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007737 B = 0.004017 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.057869 B = 6968.749086 C = 9899.696429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.612 5.612 7 C 0.254 3.746 8 C -0.549 4.549 9 H 0.047 0.953 10 C 0.030 3.970 11 N -0.913 5.913 12 Si 0.953 3.047 13 H -0.275 1.275 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.694 3.306 17 O -0.574 6.574 18 N -0.657 5.657 19 C 0.435 3.565 20 C -0.338 4.338 21 C 0.445 3.555 22 N -0.607 5.607 23 C 0.085 3.915 24 C 0.096 3.904 25 N -0.605 5.605 26 C 0.355 3.645 27 N -0.583 5.583 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.269 0.731 42 H 0.424 0.576 43 H 0.156 0.844 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 2.921 9.490 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.155 4.155 5 C 0.013 3.987 6 N -0.347 5.347 7 C 0.133 3.867 8 C -0.587 4.587 9 H 0.065 0.935 10 C -0.171 4.171 11 N -0.552 5.552 12 Si 0.779 3.221 13 H -0.201 1.201 14 H -0.202 1.202 15 H -0.203 1.203 16 C 0.395 3.605 17 O -0.450 6.450 18 N -0.305 5.305 19 C 0.198 3.802 20 C -0.370 4.370 21 C 0.203 3.797 22 N -0.320 5.320 23 C -0.057 4.057 24 C -0.046 4.046 25 N -0.333 5.333 26 C 0.065 3.935 27 N -0.309 5.309 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.265 0.735 43 H 0.173 0.827 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.111 0.889 49 H 0.089 0.911 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.928 3.546 9.507 12.287 hybrid contribution 1.541 -1.577 -0.430 2.246 sum -5.387 1.969 9.078 10.738 Atomic orbital electron populations 1.21839 0.94935 1.01519 1.01793 1.21048 0.96153 0.96750 0.97015 1.21788 1.00942 0.94981 1.02103 1.21904 1.00470 0.94567 0.98607 1.21379 0.99399 0.91910 0.85971 1.47516 1.18537 1.56792 1.11842 1.19029 0.78650 0.92062 0.96919 1.21631 0.93657 0.97447 1.45997 0.93510 1.25540 0.94723 1.01973 0.94907 1.69985 0.98962 1.38190 1.48084 0.85640 0.77630 0.80181 0.78694 1.20053 1.20178 1.20323 1.16073 0.84141 0.79571 0.80706 1.90911 1.20253 1.51092 1.82785 1.42943 1.16846 1.58159 1.12584 1.18364 0.88043 0.88325 0.85475 1.21455 1.05929 1.13665 0.95929 1.18342 0.88337 0.86669 0.86373 1.46466 1.14633 1.53788 1.17092 1.21993 0.80562 0.99727 1.03447 1.21743 0.92377 1.01783 0.88686 1.67995 1.17832 1.17733 1.29773 1.25108 0.98396 0.88495 0.81508 1.68457 1.04638 1.27349 1.30470 0.91115 0.93465 0.93579 0.90483 0.92680 0.91153 0.93174 0.93568 0.92435 0.90528 0.91289 0.95321 0.95865 0.92133 0.73481 0.82673 0.91566 0.88215 0.91308 0.92872 0.88886 0.91120 0.76340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.95 71.98 0.64 -2.98 16 2 C -0.09 -2.35 2.92 -10.79 -0.03 -2.38 16 3 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 4 C -0.12 -3.82 5.01 30.59 0.15 -3.67 16 5 C 0.14 5.18 5.16 86.38 0.45 5.63 16 6 N -0.61 -26.63 2.46 -844.23 -2.07 -28.70 16 7 C 0.25 11.94 4.97 85.63 0.43 12.37 16 8 C -0.55 -28.09 9.39 25.60 0.24 -27.85 16 9 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 10 C 0.03 1.52 5.46 84.65 0.46 1.98 16 11 N -0.91 -48.15 13.29 21.45 0.28 -47.86 16 12 Si 0.95 41.07 29.54 68.60 2.03 43.09 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 C 0.69 31.47 8.24 179.06 1.47 32.94 16 17 O -0.57 -28.17 14.22 -3.94 -0.06 -28.23 16 18 N -0.66 -27.11 5.26 -321.95 -1.69 -28.80 16 19 C 0.44 16.91 7.45 132.80 0.99 17.90 16 20 C -0.34 -10.86 9.19 22.70 0.21 -10.65 16 21 C 0.45 13.10 7.38 132.98 0.98 14.08 16 22 N -0.61 -13.26 3.38 -753.62 -2.55 -15.80 16 23 C 0.08 1.33 10.30 127.77 1.32 2.65 16 24 C 0.10 1.58 10.51 127.77 1.34 2.92 16 25 N -0.61 -18.41 9.23 -197.80 -1.82 -20.24 16 26 C 0.36 11.42 12.28 180.91 2.22 13.65 16 27 N -0.58 -23.21 8.04 -197.61 -1.59 -24.80 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.29 6.56 -2.39 -0.02 1.28 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 38 H 0.07 2.71 5.84 -2.39 -0.01 2.69 16 39 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 40 H 0.02 1.11 6.29 -2.39 -0.02 1.10 16 41 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 42 H 0.42 16.88 6.41 -92.70 -0.59 16.29 16 43 H 0.16 4.35 6.15 -2.91 -0.02 4.33 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 46 H 0.07 1.20 6.04 -2.39 -0.01 1.19 16 47 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 48 H 0.09 0.98 8.07 -2.39 -0.02 0.96 16 49 H 0.07 1.34 7.33 -2.39 -0.02 1.33 16 50 H 0.22 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -66.48 405.65 4.41 -62.07 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.34 Total: 35.09 kcal Atomic # 6 Polarization: 42.64 SS G_CDS: 11.54 Total: 54.17 kcal Atomic # 7 Polarization: -156.76 SS G_CDS: -9.44 Total: -166.20 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.06 Total: -28.23 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -66.48 4.41 -62.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289709828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.031 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds