Wall clock time and date at job start Tue Mar 31 2020 20:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 C 1.53001 * 109.47435 * 239.99869 * 2 1 3 5 5 N 1.46500 * 109.46971 * 120.00173 * 2 1 3 6 6 C 1.34875 * 125.68968 * 75.31438 * 5 2 1 7 7 C 1.36805 * 106.05682 * 180.13091 * 6 5 2 8 8 C 1.47796 * 126.96200 * 179.84889 * 7 6 5 9 9 O 1.35252 * 120.00292 * 179.71112 * 8 7 6 10 10 N 1.30117 * 119.99995 * 359.71205 * 8 7 6 11 11 C 1.46496 * 119.99866 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46669 * 115.00355 * 11 10 8 13 13 C 1.53065 * 109.45711 * 64.78898 * 12 11 10 14 14 C 1.53192 * 109.29648 * 181.24189 * 13 12 11 15 15 N 1.46922 * 108.89269 * 305.57538 * 14 13 12 16 16 C 1.36942 * 120.62796 * 233.51528 * 15 14 13 17 17 H 1.08007 * 119.99636 * 151.83092 * 16 15 14 18 18 C 1.38806 * 120.00203 * 331.83144 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.08250 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07925 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99708 * 20 18 16 22 22 H 1.48498 * 109.47355 * 210.00264 * 20 18 16 23 23 H 1.48504 * 109.46850 * 330.00278 * 20 18 16 24 24 C 1.46924 * 118.73925 * 53.53382 * 15 14 13 25 25 C 1.53049 * 109.45437 * 184.99676 * 12 11 10 26 26 N 1.34730 * 106.08160 * 359.59092 * 7 6 5 27 27 N 1.28613 * 108.68580 * 0.25910 * 26 7 6 28 28 H 1.09003 * 109.47206 * 300.00011 * 1 2 3 29 29 H 1.09001 * 109.46820 * 60.00181 * 1 2 3 30 30 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47329 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47254 * 300.00395 * 3 2 1 33 33 H 1.09003 * 109.46955 * 59.99836 * 3 2 1 34 34 H 1.08998 * 109.47026 * 300.00876 * 4 2 1 35 35 H 1.09004 * 109.46727 * 59.99886 * 4 2 1 36 36 H 1.08996 * 109.47485 * 180.02562 * 4 2 1 37 37 H 1.08000 * 126.97116 * 359.97438 * 6 5 2 38 38 H 0.96701 * 113.99833 * 0.02562 * 9 8 7 39 39 H 1.08997 * 109.47369 * 355.00076 * 11 10 8 40 40 H 1.09004 * 109.46931 * 234.99764 * 11 10 8 41 41 H 1.08992 * 109.45948 * 304.96377 * 12 11 10 42 42 H 1.09005 * 109.39523 * 61.36253 * 13 12 11 43 43 H 1.09004 * 109.62174 * 301.25940 * 13 12 11 44 44 H 1.09003 * 109.58615 * 185.71531 * 14 13 12 45 45 H 1.08998 * 109.58372 * 65.43477 * 14 13 12 46 46 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 47 47 H 1.09007 * 109.58325 * 66.18371 * 24 15 14 48 48 H 1.08996 * 109.58499 * 186.46256 * 24 15 14 49 49 H 1.09002 * 109.49883 * 58.66419 * 25 12 11 50 50 H 1.08993 * 109.49715 * 298.56271 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0187 -2.0256 1.3889 7 6 2.5553 -2.2284 2.6309 8 6 2.7681 -3.5258 3.3060 9 8 3.3189 -3.5634 4.5407 10 7 2.4256 -4.6319 2.7125 11 6 2.6370 -5.9179 3.3815 12 6 1.2840 -6.5730 3.6665 13 6 0.5911 -6.9084 2.3436 14 6 -0.7763 -7.5355 2.6331 15 7 -0.5923 -8.6850 3.5293 16 6 -1.0939 -9.9154 3.1979 17 1 -0.6144 -10.8108 3.5652 18 6 -2.2186 -10.0118 2.3901 19 7 -2.9945 -8.9632 2.2144 20 14 -2.6308 -11.6296 1.5521 21 1 -3.5045 -12.4383 2.4397 22 1 -3.3376 -11.3593 0.2744 23 1 -1.3778 -12.3774 1.2761 24 6 0.1398 -8.4894 4.7881 25 6 1.4984 -7.8548 4.4748 26 7 2.8559 -1.0062 3.1117 27 7 2.5238 -0.1255 2.2352 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.6647 -2.7810 0.7031 38 1 3.5396 -2.6930 4.8996 39 1 3.1675 -5.7565 4.3198 40 1 3.2277 -6.5696 2.7375 41 1 0.6602 -5.8845 4.2364 42 1 1.2038 -7.6143 1.7828 43 1 0.4574 -5.9979 1.7593 44 1 -1.2304 -7.8687 1.6998 45 1 -1.4222 -6.7991 3.1112 46 1 -3.7806 -9.0307 1.6502 47 1 -0.4294 -7.8296 5.4430 48 1 0.2879 -9.4517 5.2780 49 1 2.0118 -7.6160 5.4063 50 1 2.1015 -8.5537 3.8953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331074311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:56 Heat of formation + Delta-G solvation = 80.991303 kcal Electronic energy + Delta-G solvation = -29192.392255 eV Core-core repulsion = 25257.576413 eV Total energy + Delta-G solvation = -3934.815842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.66490 -38.99743 -37.84387 -37.47498 -34.66941 -33.00552 -32.32576 -31.62156 -30.35681 -29.63833 -28.14163 -28.06757 -26.82612 -24.54687 -24.05496 -23.02160 -21.99777 -21.21231 -20.37759 -20.16529 -18.92337 -18.20815 -16.93255 -16.81119 -16.63987 -15.84997 -15.04754 -14.82888 -14.70302 -14.70242 -14.31453 -13.90481 -13.68619 -13.48499 -13.36683 -13.07447 -12.96651 -12.93296 -12.75896 -12.50072 -12.42031 -12.30365 -12.08772 -11.97830 -11.67563 -11.55924 -11.35553 -11.20862 -10.88971 -10.64796 -10.62159 -10.47927 -10.16014 -10.08445 -9.94968 -9.90172 -9.63317 -9.34877 -9.13197 -8.64792 -8.37116 -6.54871 -5.69693 -3.11486 1.12013 1.58554 1.83531 3.00472 3.40863 3.41900 3.48397 3.51526 3.78698 3.88845 4.02935 4.14441 4.50960 4.56950 4.73544 4.87311 4.90035 4.99752 5.03448 5.06305 5.12170 5.15156 5.33448 5.41937 5.43851 5.48712 5.53270 5.55243 5.60040 5.68947 5.76055 5.85133 6.08718 6.11163 6.25432 6.29908 6.38965 6.51622 6.69437 6.82799 6.88869 7.01334 7.05695 7.13312 7.44962 7.53612 7.79434 7.87111 7.88792 8.12194 8.55255 9.31483 9.95668 10.53449 11.38576 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.002525 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.923291 B =11087.480120 C =12593.887134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 C -0.150 4.150 4 C -0.163 4.163 5 N -0.281 5.281 6 C 0.025 3.975 7 C -0.022 4.022 8 C 0.408 3.592 9 O -0.505 6.505 10 N -0.506 5.506 11 C 0.054 3.946 12 C -0.068 4.068 13 C -0.125 4.125 14 C 0.171 3.829 15 N -0.593 5.593 16 C -0.248 4.248 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.147 3.853 25 C -0.126 4.126 26 N -0.258 5.258 27 N -0.073 5.073 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.203 0.797 38 H 0.405 0.595 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.013 0.987 46 H 0.252 0.748 47 H 0.014 0.986 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 21.837 -6.133 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.207 4.207 4 C -0.221 4.221 5 N -0.074 5.074 6 C -0.129 4.129 7 C -0.159 4.159 8 C 0.180 3.820 9 O -0.300 6.300 10 N -0.242 5.242 11 C -0.075 4.075 12 C -0.087 4.087 13 C -0.165 4.165 14 C 0.045 3.955 15 N -0.316 5.316 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.020 3.980 25 C -0.166 4.166 26 N -0.127 5.127 27 N -0.053 5.053 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.220 0.780 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.590 22.230 -6.266 25.841 hybrid contribution -0.213 -1.203 -0.103 1.226 sum 11.377 21.027 -6.369 24.742 Atomic orbital electron populations 1.22295 0.91263 1.04320 1.04219 1.21295 0.95816 0.94064 0.80797 1.22019 1.02540 0.92117 1.04052 1.22298 1.02625 1.01709 0.95512 1.47577 1.39556 1.05601 1.14663 1.23596 1.03614 0.86292 0.99377 1.20234 1.08772 0.92075 0.94838 1.20587 0.90254 0.89870 0.81327 1.84922 1.77068 1.37426 1.30611 1.72824 1.21673 0.98037 1.31664 1.22112 0.98705 0.88870 0.97830 1.21031 0.93803 0.95937 0.97959 1.22119 0.99620 0.99494 0.95225 1.20770 0.90930 0.87854 0.95914 1.44074 1.63480 1.07388 1.16682 1.19183 1.06018 0.84337 1.28231 0.91863 1.25033 0.95390 0.97057 1.02366 1.70049 1.14672 1.29266 1.40880 0.86328 0.77987 0.83573 0.79078 1.21497 1.21631 1.20546 1.20869 0.90452 0.97508 0.89156 1.22034 0.99694 0.96592 0.98308 1.75278 1.18197 0.97257 1.21988 1.78141 1.13680 1.21423 0.92040 0.91135 0.89367 0.90798 0.91188 0.89915 0.90497 0.90618 0.89189 0.91131 0.77996 0.74103 0.92955 0.90212 0.92386 0.93144 0.92639 0.89773 0.96927 0.93803 0.96769 0.92956 0.93380 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.72 37.16 0.32 -0.51 16 2 C 0.16 0.94 1.23 -131.82 -0.16 0.78 16 3 C -0.15 -0.72 8.04 37.16 0.30 -0.42 16 4 C -0.16 -0.69 8.28 37.16 0.31 -0.39 16 5 N -0.28 -2.60 3.17 -48.29 -0.15 -2.75 16 6 C 0.03 0.26 10.44 -16.73 -0.17 0.09 16 7 C -0.02 -0.27 7.07 -83.21 -0.59 -0.86 16 8 C 0.41 5.66 7.98 -14.37 -0.11 5.55 16 9 O -0.51 -6.49 12.00 -17.45 -0.21 -6.70 16 10 N -0.51 -7.84 9.73 -59.26 -0.58 -8.41 16 11 C 0.05 0.87 5.72 -4.04 -0.02 0.85 16 12 C -0.07 -1.27 2.35 -90.56 -0.21 -1.48 16 13 C -0.13 -2.58 5.27 -26.60 -0.14 -2.72 16 14 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 15 N -0.59 -15.60 3.00 -172.32 -0.52 -16.12 16 16 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 17 H 0.06 1.76 7.89 -52.48 -0.41 1.35 16 18 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 19 N -0.90 -26.94 11.20 55.49 0.62 -26.31 16 20 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 25 C -0.13 -2.37 5.37 -26.61 -0.14 -2.51 16 26 N -0.26 -3.25 11.99 33.00 0.40 -2.86 16 27 N -0.07 -0.85 12.13 60.35 0.73 -0.11 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.44 8.02 -51.93 -0.42 0.03 16 34 H 0.07 0.33 7.36 -51.93 -0.38 -0.05 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.20 1.78 7.56 -52.49 -0.40 1.38 16 38 H 0.40 3.76 8.44 45.56 0.38 4.14 16 39 H 0.05 0.83 6.74 -51.93 -0.35 0.48 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.08 7.72 -51.93 -0.40 0.68 16 44 H 0.08 2.34 6.06 -51.93 -0.31 2.02 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 400.91 15.07 6.04 6.04 Total: -1.00 -33.87 400.91 -7.35 -41.22 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.76 Total: 0.26 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.90 Total: -1.38 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.50 Total: -56.57 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.21 Total: -6.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.87 -7.35 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331074311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.216 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds