Wall clock time and date at job start Tue Mar 31 2020 19:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30526 * 126.34273 * 2 1 4 4 N 1.28596 * 109.67083 * 180.02562 * 3 2 1 5 5 C 1.30523 * 109.67490 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.34389 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47790 * 90.02355 * 6 5 4 8 8 C 1.46905 * 110.99958 * 66.03957 * 7 6 5 9 9 C 1.46898 * 111.00702 * 189.99703 * 7 6 5 10 10 C 1.50694 * 109.47447 * 169.99857 * 9 7 6 11 11 O 1.21293 * 119.99944 * 359.97438 * 10 9 7 12 12 N 1.34782 * 120.00096 * 180.02562 * 10 9 7 13 13 C 1.37089 * 119.99906 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00012 * 137.71527 * 13 12 10 15 15 C 1.38954 * 120.00480 * 317.70963 * 13 12 10 16 16 N 1.31408 * 120.00336 * 159.55068 * 15 13 12 17 17 Si 1.86800 * 119.99712 * 339.55832 * 15 13 12 18 18 H 1.48504 * 109.47156 * 94.02118 * 17 15 13 19 19 H 1.48504 * 109.47142 * 214.02079 * 17 15 13 20 20 H 1.48500 * 109.47481 * 334.02139 * 17 15 13 21 21 C 1.46495 * 119.99730 * 0.02562 * 12 10 9 22 22 C 1.54265 * 110.03720 * 126.58211 * 21 12 10 23 23 C 1.54960 * 104.16164 * 95.74885 * 22 21 12 24 24 C 1.54884 * 102.77983 * 37.89285 * 23 22 21 25 25 C 1.53878 * 110.03038 * 243.79622 * 21 12 10 26 26 N 1.35488 * 107.30483 * 0.22875 * 5 4 3 27 27 C 1.46504 * 126.97890 * 179.77588 * 26 5 4 28 28 H 1.09001 * 109.47172 * 89.97532 * 1 2 3 29 29 H 1.09004 * 109.46691 * 209.97364 * 1 2 3 30 30 H 1.08993 * 109.47398 * 329.96870 * 1 2 3 31 31 H 1.08999 * 109.47522 * 330.01431 * 6 5 4 32 32 H 1.09009 * 109.46542 * 210.02126 * 6 5 4 33 33 H 1.09006 * 109.47230 * 183.95604 * 8 7 6 34 34 H 1.08997 * 109.47334 * 303.95665 * 8 7 6 35 35 H 1.09004 * 109.47091 * 63.96149 * 8 7 6 36 36 H 1.08999 * 109.46790 * 49.99658 * 9 7 6 37 37 H 1.09005 * 109.47116 * 290.00295 * 9 7 6 38 38 H 0.96993 * 120.00084 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.01851 * 5.18686 * 21 12 10 40 40 H 1.08993 * 110.48847 * 214.40202 * 22 21 12 41 41 H 1.09001 * 110.48206 * 337.03986 * 22 21 12 42 42 H 1.08999 * 110.72468 * 279.57746 * 23 22 21 43 43 H 1.09002 * 110.92176 * 156.30028 * 23 22 21 44 44 H 1.08995 * 110.49065 * 203.40486 * 24 23 22 45 45 H 1.08998 * 110.60042 * 80.80876 * 24 23 22 46 46 H 1.09000 * 110.02994 * 359.95324 * 25 21 12 47 47 H 1.09002 * 110.03532 * 121.37828 * 25 21 12 48 48 H 1.09002 * 109.47450 * 89.99851 * 27 26 5 49 49 H 1.09002 * 109.47271 * 209.99784 * 27 26 5 50 50 H 1.08997 * 109.47158 * 329.99765 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0514 0.0000 4 7 3.5124 0.6824 -0.0005 5 6 3.5808 -0.6210 -0.0004 6 6 4.8397 -1.4492 -0.0014 7 7 5.2499 -1.7187 1.3832 8 6 4.2695 -2.5737 2.0658 9 6 6.5911 -2.3161 1.4283 10 6 7.0776 -2.3516 2.8541 11 8 6.3762 -1.9211 3.7451 12 7 8.2926 -2.8608 3.1391 13 6 8.7353 -2.8926 4.4362 14 1 9.2447 -3.7678 4.8116 15 6 8.5288 -1.7988 5.2679 16 7 8.5720 -1.9481 6.5728 17 14 8.1895 -0.1161 4.5311 18 1 6.7228 0.0981 4.4407 19 1 8.7907 0.9324 5.3940 20 1 8.7853 -0.0411 3.1730 21 6 9.1404 -3.3792 2.0628 22 6 10.5303 -2.7121 2.1169 23 6 11.4009 -3.7143 2.9161 24 6 10.8899 -5.0878 2.4148 25 6 9.3687 -4.8891 2.2525 26 7 2.3101 -1.0912 -0.0048 27 6 1.8899 -2.4947 -0.0109 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3634 0.8896 0.5143 31 1 5.6320 -0.9055 -0.5158 32 1 4.6536 -2.3924 -0.5153 33 1 4.5611 -2.6999 3.1085 34 1 3.2853 -2.1079 2.0176 35 1 4.2348 -3.5478 1.5778 36 1 7.2753 -1.7187 0.8257 37 1 6.5503 -3.3311 1.0329 38 1 8.4274 -1.1847 7.1533 39 1 8.6731 -3.1908 1.0962 40 1 10.9286 -2.5784 1.1112 41 1 10.4742 -1.7555 2.6363 42 1 11.2294 -3.6057 3.9870 43 1 12.4575 -3.5859 2.6808 44 1 11.0967 -5.8639 3.1516 45 1 11.3458 -5.3405 1.4576 46 1 8.8494 -5.2359 3.1459 47 1 9.0122 -5.4335 1.3780 48 1 1.7834 -2.8466 1.0152 49 1 0.9341 -2.5855 -0.5271 50 1 2.6393 -3.0961 -0.5254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332299752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:01 Heat of formation + Delta-G solvation = 75.020787 kcal Electronic energy + Delta-G solvation = -30661.575448 eV Core-core repulsion = 26726.500705 eV Total energy + Delta-G solvation = -3935.074743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.18664 -39.53038 -37.65883 -36.41536 -35.15231 -33.35670 -32.62060 -31.84367 -29.41320 -28.31772 -28.12231 -27.51338 -27.20869 -26.57873 -24.52197 -22.66100 -21.14683 -20.59159 -20.40944 -20.00330 -18.91850 -17.31733 -16.94652 -16.71429 -16.04974 -15.56888 -15.28836 -14.96976 -14.93461 -14.55257 -14.30679 -13.97716 -13.85885 -13.71440 -13.44134 -13.11905 -12.98459 -12.90619 -12.84214 -12.70213 -12.37396 -12.05512 -11.84881 -11.51500 -11.48628 -11.47075 -11.24512 -10.83295 -10.75734 -10.63746 -10.45669 -10.30553 -10.26458 -10.20351 -10.03550 -9.88643 -9.73207 -9.07814 -8.56719 -8.43166 -8.05027 -7.49459 -6.12315 -3.86978 1.67550 2.31702 2.84595 3.38778 3.58100 3.82068 3.87934 3.90858 4.15720 4.28266 4.32112 4.53022 4.66359 4.67732 4.69754 4.89870 4.96829 5.09472 5.13494 5.14977 5.20294 5.26248 5.39223 5.42407 5.47135 5.48454 5.63551 5.68832 5.73655 5.76047 5.81388 5.83430 5.99581 6.11414 6.12046 6.13363 6.20343 6.36847 6.37989 6.39869 6.52642 6.73439 6.79278 6.85781 7.01546 7.06050 7.12850 7.91911 8.07739 8.77181 8.85644 9.01125 9.51698 9.89868 10.92757 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.003475 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.499464 B = 8056.592570 C = 8883.660610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.166 3.834 3 N -0.295 5.295 4 N -0.275 5.275 5 C 0.192 3.808 6 C 0.141 3.859 7 N -0.514 5.514 8 C 0.019 3.981 9 C 0.043 3.957 10 C 0.449 3.551 11 O -0.524 6.524 12 N -0.457 5.457 13 C -0.339 4.339 14 H 0.095 0.905 15 C 0.095 3.905 16 N -0.868 5.868 17 Si 0.903 3.097 18 H -0.250 1.250 19 H -0.312 1.312 20 H -0.281 1.281 21 C 0.126 3.874 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.129 4.129 26 N -0.474 5.474 27 C 0.069 3.931 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.270 0.730 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.053 0.947 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 -6.624 -16.798 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 N -0.136 5.136 4 N -0.115 5.115 5 C -0.076 4.076 6 C 0.011 3.989 7 N -0.239 5.239 8 C -0.129 4.129 9 C -0.088 4.088 10 C 0.237 3.763 11 O -0.405 6.405 12 N -0.180 5.180 13 C -0.465 4.465 14 H 0.112 0.888 15 C -0.113 4.113 16 N -0.503 5.503 17 Si 0.733 3.267 18 H -0.175 1.175 19 H -0.241 1.241 20 H -0.207 1.207 21 C 0.022 3.978 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.168 4.168 26 N -0.166 5.166 27 C -0.075 4.075 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.235 -4.478 -15.906 18.930 hybrid contribution -0.500 -1.322 -0.745 1.598 sum -9.736 -5.800 -16.651 20.141 Atomic orbital electron populations 1.20174 0.83930 1.04497 1.03669 1.24791 0.96948 0.83023 1.05364 1.74273 0.96586 1.23945 1.18775 1.74271 1.11702 1.08052 1.17504 1.24525 0.86202 0.92565 1.04264 1.20393 0.90979 0.96140 0.91363 1.61476 1.02046 1.47959 1.12386 1.22710 0.94847 0.92664 1.02683 1.22040 0.90183 0.98172 0.98392 1.20059 0.82537 0.84249 0.89415 1.90533 1.55128 1.47474 1.47361 1.43772 1.11846 1.55680 1.06745 1.18602 1.41545 1.02522 0.83818 0.88792 1.25239 0.92466 0.99150 0.94479 1.69756 1.45584 1.31716 1.03247 0.86558 0.80216 0.81960 0.77929 1.17525 1.24106 1.20667 1.21788 0.92131 0.93422 0.90506 1.22549 0.94688 1.00079 0.98878 1.22497 0.97336 0.93779 1.02024 1.22264 0.95560 0.97926 0.99839 1.22491 0.96561 0.96050 1.01700 1.46012 1.06813 1.08597 1.55183 1.22193 1.02479 0.78323 1.04469 0.89865 0.90593 0.88695 0.87299 0.93200 0.87846 0.92787 0.96362 0.88996 0.92796 0.91999 0.91434 0.92548 0.90605 0.89634 0.92988 0.92322 0.92729 0.90391 0.92849 0.89553 0.89063 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.06 36.01 0.36 -0.11 16 2 C 0.17 2.11 8.03 -154.98 -1.24 0.86 16 3 N -0.29 -5.05 12.21 32.80 0.40 -4.65 16 4 N -0.28 -5.08 12.21 32.79 0.40 -4.68 16 5 C 0.19 2.88 6.65 -154.99 -1.03 1.84 16 6 C 0.14 1.87 5.32 -4.98 -0.03 1.85 16 7 N -0.51 -8.74 4.49 -245.82 -1.10 -9.84 16 8 C 0.02 0.29 8.29 60.07 0.50 0.79 16 9 C 0.04 0.73 3.77 -4.98 -0.02 0.71 16 10 C 0.45 10.20 5.63 -10.99 -0.06 10.14 16 11 O -0.52 -14.17 9.84 5.55 0.05 -14.11 16 12 N -0.46 -10.29 2.03 -106.55 -0.22 -10.51 16 13 C -0.34 -9.03 7.36 -14.94 -0.11 -9.14 16 14 H 0.09 2.63 7.01 -52.49 -0.37 2.26 16 15 C 0.10 2.77 4.82 -17.47 -0.08 2.68 16 16 N -0.87 -26.39 13.96 55.50 0.77 -25.62 16 17 Si 0.90 24.81 24.91 -169.99 -4.23 20.58 16 18 H -0.25 -7.43 6.28 56.52 0.35 -7.08 16 19 H -0.31 -8.55 7.11 56.52 0.40 -8.15 16 20 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 21 C 0.13 2.21 3.25 -66.81 -0.22 1.99 16 22 C -0.12 -2.11 6.05 -25.03 -0.15 -2.26 16 23 C -0.12 -1.93 6.56 -24.70 -0.16 -2.09 16 24 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 16 25 C -0.13 -2.03 6.25 -25.61 -0.16 -2.19 16 26 N -0.47 -5.59 2.76 -118.00 -0.33 -5.91 16 27 C 0.07 0.46 9.44 59.85 0.57 1.03 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.11 1.37 7.93 -51.93 -0.41 0.96 16 32 H 0.05 0.49 7.19 -51.92 -0.37 0.12 16 33 H 0.10 2.06 5.88 -51.93 -0.31 1.76 16 34 H 0.05 0.80 4.98 -51.93 -0.26 0.54 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 1.43 7.48 -51.93 -0.39 1.04 16 37 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 38 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.07 1.00 5.85 -51.93 -0.30 0.70 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.53 7.86 -51.93 -0.41 1.12 16 42 H 0.09 1.66 6.79 -51.93 -0.35 1.30 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.43 7.28 -51.93 -0.38 1.05 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.57 6.91 -51.93 -0.36 0.22 16 49 H 0.09 0.36 7.82 -51.93 -0.41 -0.05 16 50 H 0.09 0.50 7.19 -51.93 -0.37 0.13 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -37.67 380.55 -8.59 -46.26 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.07 Total: -1.50 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.01 Total: 4.26 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.07 Total: -61.22 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.05 Total: -14.11 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.23 Total: 20.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.67 -8.59 -46.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332299752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.284 kcal (2) G-P(sol) polarization free energy of solvation -37.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds