Wall clock time and date at job start Tue Mar 31 2020 19:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30526 * 126.34273 * 2 1 4 4 N 1.28596 * 109.67083 * 180.02562 * 3 2 1 5 5 C 1.30523 * 109.67490 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.34389 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47790 * 90.02355 * 6 5 4 8 8 C 1.46905 * 110.99958 * 66.03957 * 7 6 5 9 9 C 1.46898 * 111.00702 * 189.99703 * 7 6 5 10 10 C 1.50694 * 109.47447 * 169.99857 * 9 7 6 11 11 O 1.21293 * 119.99944 * 359.97438 * 10 9 7 12 12 N 1.34782 * 120.00096 * 180.02562 * 10 9 7 13 13 C 1.37089 * 119.99906 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00012 * 137.71527 * 13 12 10 15 15 C 1.38954 * 120.00480 * 317.70963 * 13 12 10 16 16 N 1.31408 * 120.00336 * 159.55068 * 15 13 12 17 17 Si 1.86800 * 119.99712 * 339.55832 * 15 13 12 18 18 H 1.48504 * 109.47156 * 94.02118 * 17 15 13 19 19 H 1.48504 * 109.47142 * 214.02079 * 17 15 13 20 20 H 1.48500 * 109.47481 * 334.02139 * 17 15 13 21 21 C 1.46495 * 119.99730 * 0.02562 * 12 10 9 22 22 C 1.54265 * 110.03720 * 126.58211 * 21 12 10 23 23 C 1.54960 * 104.16164 * 95.74885 * 22 21 12 24 24 C 1.54884 * 102.77983 * 37.89285 * 23 22 21 25 25 C 1.53878 * 110.03038 * 243.79622 * 21 12 10 26 26 N 1.35488 * 107.30483 * 0.22875 * 5 4 3 27 27 C 1.46504 * 126.97890 * 179.77588 * 26 5 4 28 28 H 1.09001 * 109.47172 * 89.97532 * 1 2 3 29 29 H 1.09004 * 109.46691 * 209.97364 * 1 2 3 30 30 H 1.08993 * 109.47398 * 329.96870 * 1 2 3 31 31 H 1.08999 * 109.47522 * 330.01431 * 6 5 4 32 32 H 1.09009 * 109.46542 * 210.02126 * 6 5 4 33 33 H 1.09006 * 109.47230 * 183.95604 * 8 7 6 34 34 H 1.08997 * 109.47334 * 303.95665 * 8 7 6 35 35 H 1.09004 * 109.47091 * 63.96149 * 8 7 6 36 36 H 1.08999 * 109.46790 * 49.99658 * 9 7 6 37 37 H 1.09005 * 109.47116 * 290.00295 * 9 7 6 38 38 H 0.96993 * 120.00084 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.01851 * 5.18686 * 21 12 10 40 40 H 1.08993 * 110.48847 * 214.40202 * 22 21 12 41 41 H 1.09001 * 110.48206 * 337.03986 * 22 21 12 42 42 H 1.08999 * 110.72468 * 279.57746 * 23 22 21 43 43 H 1.09002 * 110.92176 * 156.30028 * 23 22 21 44 44 H 1.08995 * 110.49065 * 203.40486 * 24 23 22 45 45 H 1.08998 * 110.60042 * 80.80876 * 24 23 22 46 46 H 1.09000 * 110.02994 * 359.95324 * 25 21 12 47 47 H 1.09002 * 110.03532 * 121.37828 * 25 21 12 48 48 H 1.09002 * 109.47450 * 89.99851 * 27 26 5 49 49 H 1.09002 * 109.47271 * 209.99784 * 27 26 5 50 50 H 1.08997 * 109.47158 * 329.99765 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0514 0.0000 4 7 3.5124 0.6824 -0.0005 5 6 3.5808 -0.6210 -0.0004 6 6 4.8397 -1.4492 -0.0014 7 7 5.2499 -1.7187 1.3832 8 6 4.2695 -2.5737 2.0658 9 6 6.5911 -2.3161 1.4283 10 6 7.0776 -2.3516 2.8541 11 8 6.3762 -1.9211 3.7451 12 7 8.2926 -2.8608 3.1391 13 6 8.7353 -2.8926 4.4362 14 1 9.2447 -3.7678 4.8116 15 6 8.5288 -1.7988 5.2679 16 7 8.5720 -1.9481 6.5728 17 14 8.1895 -0.1161 4.5311 18 1 6.7228 0.0981 4.4407 19 1 8.7907 0.9324 5.3940 20 1 8.7853 -0.0411 3.1730 21 6 9.1404 -3.3792 2.0628 22 6 10.5303 -2.7121 2.1169 23 6 11.4009 -3.7143 2.9161 24 6 10.8899 -5.0878 2.4148 25 6 9.3687 -4.8891 2.2525 26 7 2.3101 -1.0912 -0.0048 27 6 1.8899 -2.4947 -0.0109 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3634 0.8896 0.5143 31 1 5.6320 -0.9055 -0.5158 32 1 4.6536 -2.3924 -0.5153 33 1 4.5611 -2.6999 3.1085 34 1 3.2853 -2.1079 2.0176 35 1 4.2348 -3.5478 1.5778 36 1 7.2753 -1.7187 0.8257 37 1 6.5503 -3.3311 1.0329 38 1 8.4274 -1.1847 7.1533 39 1 8.6731 -3.1908 1.0962 40 1 10.9286 -2.5784 1.1112 41 1 10.4742 -1.7555 2.6363 42 1 11.2294 -3.6057 3.9870 43 1 12.4575 -3.5859 2.6808 44 1 11.0967 -5.8639 3.1516 45 1 11.3458 -5.3405 1.4576 46 1 8.8494 -5.2359 3.1459 47 1 9.0122 -5.4335 1.3780 48 1 1.7834 -2.8466 1.0152 49 1 0.9341 -2.5855 -0.5271 50 1 2.6393 -3.0961 -0.5254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332299752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:00 Heat of formation + Delta-G solvation = 47.573760 kcal Electronic energy + Delta-G solvation = -30662.765641 eV Core-core repulsion = 26726.500705 eV Total energy + Delta-G solvation = -3936.264935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.17246 -41.16779 -38.97992 -37.84496 -36.05155 -35.17276 -33.92666 -33.48711 -30.41117 -29.63143 -29.38156 -28.64889 -28.20814 -27.62978 -26.21878 -24.09230 -22.08059 -21.97448 -21.51581 -21.27927 -20.62695 -18.83334 -17.91320 -17.87480 -17.53058 -17.21142 -16.57060 -16.42523 -16.11179 -15.79698 -15.48918 -15.36178 -15.14114 -15.02730 -14.59332 -14.48486 -14.21214 -14.05156 -13.77054 -13.53282 -13.47158 -13.37405 -13.20915 -13.13359 -12.87069 -12.63752 -12.59216 -12.52616 -12.23638 -12.06306 -11.88089 -11.77429 -11.71231 -11.49735 -11.32051 -11.17898 -11.11634 -10.68468 -10.28007 -10.12820 -9.48020 -9.23704 -8.35896 -6.03984 0.73336 1.21949 1.32906 1.52779 1.55746 1.77203 2.04148 2.47295 2.57600 3.05990 3.18520 3.25292 3.53376 3.75479 3.77884 3.85632 3.90104 3.96323 4.13436 4.24140 4.28153 4.29070 4.31794 4.38320 4.48282 4.51426 4.61263 4.62993 4.66597 4.74491 4.80888 4.82721 4.87111 4.93870 4.97743 4.98148 5.08281 5.13422 5.21013 5.22347 5.29830 5.48330 5.52829 5.72972 5.76514 5.82392 5.93487 6.00815 6.05718 6.89986 7.05179 7.47644 7.73225 8.02502 8.73109 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.003475 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.499464 B = 8056.592570 C = 8883.660610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.174 3.826 3 N -0.352 5.352 4 N -0.334 5.334 5 C 0.183 3.817 6 C 0.148 3.852 7 N -0.552 5.552 8 C 0.030 3.970 9 C 0.055 3.945 10 C 0.441 3.559 11 O -0.574 6.574 12 N -0.472 5.472 13 C -0.308 4.308 14 H 0.072 0.928 15 C 0.050 3.950 16 N -0.916 5.916 17 Si 0.949 3.051 18 H -0.289 1.289 19 H -0.318 1.318 20 H -0.263 1.263 21 C 0.118 3.882 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.126 4.126 26 N -0.469 5.469 27 C 0.056 3.944 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.040 0.960 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -9.341 -21.633 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 N -0.193 5.193 4 N -0.174 5.174 5 C -0.086 4.086 6 C 0.019 3.981 7 N -0.278 5.278 8 C -0.117 4.117 9 C -0.075 4.075 10 C 0.231 3.769 11 O -0.458 6.458 12 N -0.196 5.196 13 C -0.435 4.435 14 H 0.090 0.910 15 C -0.153 4.153 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.217 1.217 19 H -0.249 1.249 20 H -0.187 1.187 21 C 0.014 3.986 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.148 4.148 25 C -0.164 4.164 26 N -0.160 5.160 27 C -0.084 4.084 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.059 0.941 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.143 0.857 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.873 -7.223 -20.795 24.126 hybrid contribution -0.403 -0.594 0.689 0.995 sum -10.276 -7.816 -20.106 23.894 Atomic orbital electron populations 1.20433 0.80330 1.05736 1.05598 1.25681 0.98750 0.82501 1.02479 1.74140 0.96930 1.26498 1.21712 1.74121 1.12961 1.10530 1.19792 1.24810 0.87964 0.92019 1.03805 1.20477 0.90416 0.97884 0.89362 1.61262 1.02213 1.49105 1.15199 1.22495 0.94554 0.94570 1.00128 1.21941 0.90636 1.01176 0.93738 1.21246 0.81870 0.81900 0.91865 1.90523 1.56442 1.49089 1.49727 1.44021 1.13008 1.56055 1.06477 1.18447 1.38567 1.00560 0.85940 0.91000 1.25696 0.93802 1.01065 0.94693 1.69835 1.49661 1.31859 1.04154 0.85818 0.77306 0.80490 0.78262 1.21686 1.24867 1.18710 1.22197 0.91778 0.94339 0.90248 1.22605 0.94918 0.98070 1.00735 1.22454 0.98914 0.95375 0.99236 1.22258 0.94691 0.96293 1.01518 1.22467 0.97261 0.94861 1.01801 1.46253 1.05583 1.10248 1.53925 1.22636 1.04829 0.75568 1.05406 0.87412 0.87764 0.89020 0.86864 0.88554 0.92844 0.92484 0.92479 0.86826 0.88399 0.92504 0.87281 0.88277 0.94504 0.94313 0.90680 0.92674 0.88953 0.94063 0.88730 0.89385 0.85747 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.06 71.24 0.72 -0.02 16 2 C 0.17 4.17 8.03 137.98 1.11 5.27 16 3 N -0.35 -12.20 12.21 -50.15 -0.61 -12.82 16 4 N -0.33 -12.44 12.21 -50.16 -0.61 -13.05 16 5 C 0.18 5.17 6.65 137.98 0.92 6.09 16 6 C 0.15 3.37 5.32 85.56 0.46 3.83 16 7 N -0.55 -17.38 4.49 -931.65 -4.18 -21.56 16 8 C 0.03 0.89 8.29 127.69 1.06 1.95 16 9 C 0.06 1.67 3.77 85.56 0.32 1.99 16 10 C 0.44 19.65 5.63 87.65 0.49 20.15 16 11 O -0.57 -31.94 9.84 -3.07 -0.03 -31.97 16 12 N -0.47 -20.92 2.03 -609.39 -1.24 -22.15 16 13 C -0.31 -16.93 7.36 84.04 0.62 -16.31 16 14 H 0.07 4.23 7.01 -2.91 -0.02 4.21 16 15 C 0.05 3.06 4.82 84.93 0.41 3.47 16 16 N -0.92 -59.06 13.96 21.66 0.30 -58.76 16 17 Si 0.95 53.94 24.91 68.60 1.71 55.65 16 18 H -0.29 -18.17 6.28 99.48 0.62 -17.54 16 19 H -0.32 -18.08 7.11 99.48 0.71 -17.37 16 20 H -0.26 -13.79 7.11 99.48 0.71 -13.08 16 21 C 0.12 3.71 3.25 45.72 0.15 3.86 16 22 C -0.13 -3.92 6.05 31.69 0.19 -3.73 16 23 C -0.12 -3.77 6.56 31.91 0.21 -3.56 16 24 C -0.11 -2.76 6.83 31.67 0.22 -2.55 16 25 C -0.13 -3.48 6.25 31.32 0.20 -3.28 16 26 N -0.47 -9.78 2.76 -527.24 -1.45 -11.24 16 27 C 0.06 0.50 9.44 127.77 1.21 1.71 16 28 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.66 7.87 -2.38 -0.02 0.64 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 2.46 7.93 -2.39 -0.02 2.44 16 32 H 0.10 1.30 7.19 -2.38 -0.02 1.28 16 33 H 0.05 2.15 5.88 -2.38 -0.01 2.13 16 34 H 0.06 1.60 4.98 -2.39 -0.01 1.59 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.11 2.97 7.48 -2.39 -0.02 2.96 16 37 H 0.10 2.12 7.87 -2.38 -0.02 2.10 16 38 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 39 H 0.11 2.56 5.85 -2.39 -0.01 2.54 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 1.44 7.86 -2.39 -0.02 1.42 16 42 H 0.04 1.54 6.79 -2.39 -0.02 1.52 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.45 7.28 -2.39 -0.02 1.43 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.09 0.82 6.91 -2.39 -0.02 0.80 16 49 H 0.12 0.30 7.82 -2.39 -0.02 0.29 16 50 H 0.11 0.58 7.19 -2.39 -0.02 0.57 16 Total: -1.00 -94.09 380.55 3.01 -91.08 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.86 Total: 5.95 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 8.27 Total: 18.87 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -7.80 Total: -139.57 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.03 Total: -31.97 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 1.71 Total: 55.65 kcal Total: -94.09 3.01 -91.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332299752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.652 kcal (2) G-P(sol) polarization free energy of solvation -94.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds