Wall clock time and date at job start Tue Mar 31 2020 20:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35487 * 126.98328 * 2 1 4 4 N 1.30518 * 107.31212 * 179.97438 * 3 2 1 5 5 N 1.28604 * 109.66680 * 0.02562 * 4 3 2 6 6 C 1.30519 * 109.67489 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.34573 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.87107 * 195.67225 * 7 6 5 9 9 C 1.54323 * 109.88205 * 74.65443 * 7 6 5 10 10 C 1.55399 * 102.82755 * 218.48075 * 9 7 6 11 11 C 1.54906 * 101.66484 * 35.34259 * 10 9 7 12 12 N 1.47018 * 109.87996 * 316.69094 * 7 6 5 13 13 C 1.34784 * 125.64966 * 298.31901 * 12 7 6 14 14 O 1.21588 * 119.99634 * 0.02562 * 13 12 7 15 15 N 1.34775 * 120.00222 * 180.02562 * 13 12 7 16 16 C 1.46499 * 119.99632 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46904 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46948 * 300.00330 * 17 16 15 19 19 C 1.52998 * 109.47108 * 59.99663 * 17 16 15 20 20 C 1.52998 * 109.47263 * 180.02562 * 17 16 15 21 21 C 1.50701 * 109.47178 * 180.02562 * 20 17 16 22 22 H 1.08006 * 119.99997 * 359.97438 * 21 20 17 23 23 C 1.37879 * 120.00263 * 179.97438 * 21 20 17 24 24 N 1.31515 * 120.00212 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99632 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47257 * 89.99969 * 25 23 21 27 27 H 1.48504 * 109.46838 * 210.00019 * 25 23 21 28 28 H 1.48504 * 109.46930 * 329.99805 * 25 23 21 29 29 H 1.08997 * 109.47418 * 270.00176 * 1 2 3 30 30 H 1.09007 * 109.47249 * 30.00075 * 1 2 3 31 31 H 1.09003 * 109.47398 * 149.99691 * 1 2 3 32 32 H 1.08000 * 126.34449 * 0.03714 * 3 2 1 33 33 H 1.09002 * 110.72518 * 336.75541 * 9 7 6 34 34 H 1.08999 * 110.71879 * 100.02934 * 9 7 6 35 35 H 1.08998 * 110.89505 * 277.26868 * 10 9 7 36 36 H 1.09003 * 111.06737 * 153.48970 * 10 9 7 37 37 H 1.09006 * 110.36600 * 204.23590 * 11 10 9 38 38 H 1.09004 * 110.36907 * 81.91260 * 11 10 9 39 39 H 0.96997 * 119.99522 * 359.97438 * 15 13 12 40 40 H 1.08998 * 109.47136 * 299.99419 * 16 15 13 41 41 H 1.09003 * 109.47269 * 60.00251 * 16 15 13 42 42 H 1.08999 * 109.47314 * 59.99980 * 18 17 16 43 43 H 1.09003 * 109.47124 * 179.97438 * 18 17 16 44 44 H 1.09003 * 109.47184 * 299.99586 * 18 17 16 45 45 H 1.08998 * 109.47209 * 60.00273 * 19 17 16 46 46 H 1.08997 * 109.47406 * 179.97438 * 19 17 16 47 47 H 1.08999 * 109.47561 * 300.00270 * 19 17 16 48 48 H 1.08998 * 109.46865 * 299.99611 * 20 17 16 49 49 H 1.09003 * 109.47180 * 60.00224 * 20 17 16 50 50 H 0.96995 * 120.00086 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5090 -0.6431 0.0004 6 6 2.2800 -1.0824 -0.0009 7 6 1.8475 -2.5261 -0.0010 8 1 0.7961 -2.5979 -0.2790 9 6 2.0633 -3.1387 1.3989 10 6 2.5609 -4.5746 1.0742 11 6 3.4030 -4.3328 -0.2032 12 7 2.6689 -3.2939 -0.9482 13 6 2.7384 -3.0835 -2.2777 14 8 2.0852 -2.1936 -2.7873 15 7 3.5320 -3.8595 -3.0422 16 6 3.6080 -3.6303 -4.4872 17 6 4.5725 -4.6394 -5.1135 18 6 5.9619 -4.4679 -4.4961 19 6 4.0684 -6.0593 -4.8481 20 6 4.6524 -4.3997 -6.6225 21 6 5.6020 -5.3940 -7.2395 22 1 6.0991 -6.1237 -6.6175 23 6 5.8361 -5.3723 -8.5981 24 7 6.6652 -6.2397 -9.1365 25 14 4.9768 -4.1098 -9.6738 26 1 5.8110 -2.8844 -9.7616 27 1 4.7779 -4.6717 -11.0339 28 1 3.6584 -3.7697 -9.0810 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.9702 2.1169 0.0006 33 1 2.8222 -2.5834 1.9502 34 1 1.1263 -3.1692 1.9551 35 1 1.7220 -5.2396 0.8692 36 1 3.1794 -4.9668 1.8815 37 1 3.4690 -5.2473 -0.7928 38 1 4.3993 -3.9779 0.0606 39 1 4.0534 -4.5692 -2.6355 40 1 2.6181 -3.7521 -4.9269 41 1 3.9677 -2.6188 -4.6762 42 1 5.9054 -4.6384 -3.4210 43 1 6.6490 -5.1871 -4.9420 44 1 6.3212 -3.4562 -4.6851 45 1 3.0786 -6.1816 -5.2879 46 1 4.7552 -6.7782 -5.2947 47 1 4.0118 -6.2298 -3.7730 48 1 3.6627 -4.5216 -7.0626 49 1 5.0119 -3.3881 -6.8112 50 1 6.8301 -6.2242 -10.0922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358734881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:12 Heat of formation + Delta-G solvation = 50.909045 kcal Electronic energy + Delta-G solvation = -30091.839019 eV Core-core repulsion = 26155.718712 eV Total energy + Delta-G solvation = -3936.120307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.24150 -40.32696 -38.18404 -36.89273 -35.24172 -33.70290 -32.28199 -31.64433 -31.39787 -28.61196 -27.83797 -27.76502 -26.51148 -26.17345 -24.06993 -22.62723 -22.34415 -22.04208 -21.00473 -19.65697 -18.68311 -17.63363 -17.42224 -16.79431 -16.67384 -16.43033 -15.75874 -15.15687 -15.00142 -14.59312 -14.36826 -14.03909 -13.89670 -13.75734 -13.54496 -13.43674 -13.27257 -13.08376 -12.70248 -12.64795 -12.24781 -12.22746 -12.11025 -11.67580 -11.58975 -11.26138 -11.20917 -11.07708 -10.98017 -10.58071 -10.45938 -10.44078 -10.35567 -10.13273 -9.93206 -9.72047 -9.50184 -9.34943 -9.00955 -8.96136 -8.54453 -8.50535 -6.01613 -3.98553 1.60358 2.21915 2.57953 2.87666 3.30123 3.34283 3.41783 3.46293 3.87179 4.04270 4.19893 4.26817 4.31715 4.39405 4.48454 4.55197 4.64398 4.70841 4.95940 5.00322 5.20450 5.26371 5.31337 5.33832 5.42004 5.46377 5.52239 5.58879 5.66269 5.68649 5.80073 5.96058 6.01143 6.15154 6.18963 6.23074 6.37681 6.54970 6.64231 6.65453 6.77348 6.94229 7.03139 7.05435 7.09636 7.24149 7.40609 7.80820 8.06360 8.55632 8.65132 8.71161 9.02600 9.61324 11.11168 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002769 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.839152 B =10108.282082 C =10958.458100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.471 5.471 3 C 0.146 3.854 4 N -0.297 5.297 5 N -0.278 5.278 6 C 0.176 3.824 7 C 0.248 3.752 8 H 0.088 0.912 9 C -0.121 4.121 10 C -0.127 4.127 11 C 0.098 3.902 12 N -0.625 5.625 13 C 0.725 3.275 14 O -0.591 6.591 15 N -0.730 5.730 16 C 0.145 3.855 17 C -0.062 4.062 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.002 4.002 21 C -0.509 4.509 22 H 0.078 0.922 23 C 0.067 3.933 24 N -0.904 5.904 25 Si 0.874 3.126 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.265 1.265 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.216 0.784 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.396 0.604 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.029 0.971 48 H 0.018 0.982 49 H 0.014 0.986 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 6.860 25.848 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.162 5.162 3 C -0.142 4.142 4 N -0.136 5.136 5 N -0.119 5.119 6 C -0.093 4.093 7 C 0.139 3.861 8 H 0.106 0.894 9 C -0.160 4.160 10 C -0.165 4.165 11 C -0.025 4.025 12 N -0.364 5.364 13 C 0.427 3.573 14 O -0.469 6.469 15 N -0.385 5.385 16 C 0.022 3.978 17 C -0.063 4.063 18 C -0.185 4.185 19 C -0.184 4.184 20 C -0.039 4.039 21 C -0.547 4.547 22 H 0.096 0.904 23 C -0.134 4.134 24 N -0.544 5.544 25 Si 0.702 3.298 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.190 1.190 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.233 0.767 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.036 0.964 49 H 0.032 0.968 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.956 7.485 25.139 29.712 hybrid contribution -1.614 0.642 -0.710 1.876 sum -15.570 8.127 24.429 30.088 Atomic orbital electron populations 1.22113 0.75531 1.05655 1.03764 1.46090 1.09109 1.06653 1.54298 1.26385 0.87355 0.94802 1.05629 1.74259 1.18048 1.03414 1.17926 1.74205 1.16901 1.02896 1.17865 1.25072 0.87671 0.92220 1.04373 1.19477 0.94827 0.81541 0.90217 0.89409 1.22749 1.03076 0.96474 0.93686 1.22799 1.00289 0.96073 0.97387 1.22341 0.96218 0.91029 0.92878 1.47418 1.48846 1.35456 1.04647 1.15426 0.80667 0.81957 0.79258 1.90894 1.49181 1.34918 1.71909 1.45287 1.47623 1.36733 1.08867 1.21508 0.99916 0.99576 0.76802 1.20697 0.93764 0.93799 0.98031 1.21765 0.97008 1.02269 0.97458 1.21753 1.01379 0.96977 0.98274 1.19587 0.97475 0.97247 0.89629 1.21081 1.24846 1.15946 0.92863 0.90362 1.24990 0.94850 0.95485 0.98090 1.69899 1.36143 1.36388 1.11934 0.86865 0.80962 0.82082 0.79908 1.20358 1.21526 1.19012 0.89940 0.88898 0.89019 0.76723 0.89566 0.89365 0.90124 0.89158 0.90325 0.90703 0.76855 0.92091 0.92115 0.95065 0.90904 0.93374 0.93449 0.90874 0.95151 0.96387 0.96796 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.01 59.85 0.66 1.02 16 2 N -0.47 -4.76 3.15 -122.69 -0.39 -5.15 16 3 C 0.15 1.60 12.74 -89.95 -1.15 0.45 16 4 N -0.30 -4.61 12.21 29.69 0.36 -4.25 16 5 N -0.28 -4.47 12.21 32.80 0.40 -4.07 16 6 C 0.18 2.22 5.97 -154.99 -0.93 1.30 16 7 C 0.25 2.50 3.23 -68.11 -0.22 2.28 16 8 H 0.09 0.79 6.94 -51.93 -0.36 0.43 16 9 C -0.12 -0.77 6.49 -24.76 -0.16 -0.93 16 10 C -0.13 -0.70 7.09 -24.45 -0.17 -0.87 16 11 C 0.10 0.84 6.58 -2.53 -0.02 0.83 16 12 N -0.62 -7.63 3.05 -170.01 -0.52 -8.15 16 13 C 0.72 11.81 8.28 -86.91 -0.72 11.09 16 14 O -0.59 -11.80 16.18 5.29 0.09 -11.72 16 15 N -0.73 -11.31 4.92 -65.22 -0.32 -11.63 16 16 C 0.15 2.62 4.56 -4.04 -0.02 2.60 16 17 C -0.06 -1.18 0.54 -154.51 -0.08 -1.27 16 18 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 19 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 20 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 21 C -0.51 -13.83 8.20 -34.44 -0.28 -14.11 16 22 H 0.08 2.24 5.92 -52.48 -0.31 1.93 16 23 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 24 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 25 Si 0.87 21.87 27.47 -169.99 -4.67 17.21 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.09 0.48 7.07 -51.93 -0.37 0.11 16 32 H 0.22 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.09 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.60 7.30 -51.93 -0.38 0.22 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 5.28 4.64 -40.82 -0.19 5.09 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 43 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 47 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 48 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 49 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 50 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -38.18 392.49 -9.03 -47.21 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.00 Total: 1.24 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.67 Total: 0.13 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.31 Total: -59.99 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.18 -9.03 -47.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358734881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.121 kcal (2) G-P(sol) polarization free energy of solvation -38.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds