Wall clock time and date at job start Tue Mar 31 2020 20:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35487 * 126.98328 * 2 1 4 4 N 1.30518 * 107.31212 * 179.97438 * 3 2 1 5 5 N 1.28604 * 109.66680 * 0.02562 * 4 3 2 6 6 C 1.30519 * 109.67489 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.34573 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.87107 * 195.67225 * 7 6 5 9 9 C 1.54323 * 109.88205 * 74.65443 * 7 6 5 10 10 C 1.55399 * 102.82755 * 218.48075 * 9 7 6 11 11 C 1.54906 * 101.66484 * 35.34259 * 10 9 7 12 12 N 1.47018 * 109.87996 * 316.69094 * 7 6 5 13 13 C 1.34784 * 125.64966 * 298.31901 * 12 7 6 14 14 O 1.21588 * 119.99634 * 0.02562 * 13 12 7 15 15 N 1.34775 * 120.00222 * 180.02562 * 13 12 7 16 16 C 1.46499 * 119.99632 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46904 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46948 * 300.00330 * 17 16 15 19 19 C 1.52998 * 109.47108 * 59.99663 * 17 16 15 20 20 C 1.52998 * 109.47263 * 180.02562 * 17 16 15 21 21 C 1.50701 * 109.47178 * 180.02562 * 20 17 16 22 22 H 1.08006 * 119.99997 * 359.97438 * 21 20 17 23 23 C 1.37879 * 120.00263 * 179.97438 * 21 20 17 24 24 N 1.31515 * 120.00212 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99632 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47257 * 89.99969 * 25 23 21 27 27 H 1.48504 * 109.46838 * 210.00019 * 25 23 21 28 28 H 1.48504 * 109.46930 * 329.99805 * 25 23 21 29 29 H 1.08997 * 109.47418 * 270.00176 * 1 2 3 30 30 H 1.09007 * 109.47249 * 30.00075 * 1 2 3 31 31 H 1.09003 * 109.47398 * 149.99691 * 1 2 3 32 32 H 1.08000 * 126.34449 * 0.03714 * 3 2 1 33 33 H 1.09002 * 110.72518 * 336.75541 * 9 7 6 34 34 H 1.08999 * 110.71879 * 100.02934 * 9 7 6 35 35 H 1.08998 * 110.89505 * 277.26868 * 10 9 7 36 36 H 1.09003 * 111.06737 * 153.48970 * 10 9 7 37 37 H 1.09006 * 110.36600 * 204.23590 * 11 10 9 38 38 H 1.09004 * 110.36907 * 81.91260 * 11 10 9 39 39 H 0.96997 * 119.99522 * 359.97438 * 15 13 12 40 40 H 1.08998 * 109.47136 * 299.99419 * 16 15 13 41 41 H 1.09003 * 109.47269 * 60.00251 * 16 15 13 42 42 H 1.08999 * 109.47314 * 59.99980 * 18 17 16 43 43 H 1.09003 * 109.47124 * 179.97438 * 18 17 16 44 44 H 1.09003 * 109.47184 * 299.99586 * 18 17 16 45 45 H 1.08998 * 109.47209 * 60.00273 * 19 17 16 46 46 H 1.08997 * 109.47406 * 179.97438 * 19 17 16 47 47 H 1.08999 * 109.47561 * 300.00270 * 19 17 16 48 48 H 1.08998 * 109.46865 * 299.99611 * 20 17 16 49 49 H 1.09003 * 109.47180 * 60.00224 * 20 17 16 50 50 H 0.96995 * 120.00086 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5090 -0.6431 0.0004 6 6 2.2800 -1.0824 -0.0009 7 6 1.8475 -2.5261 -0.0010 8 1 0.7961 -2.5979 -0.2790 9 6 2.0633 -3.1387 1.3989 10 6 2.5609 -4.5746 1.0742 11 6 3.4030 -4.3328 -0.2032 12 7 2.6689 -3.2939 -0.9482 13 6 2.7384 -3.0835 -2.2777 14 8 2.0852 -2.1936 -2.7873 15 7 3.5320 -3.8595 -3.0422 16 6 3.6080 -3.6303 -4.4872 17 6 4.5725 -4.6394 -5.1135 18 6 5.9619 -4.4679 -4.4961 19 6 4.0684 -6.0593 -4.8481 20 6 4.6524 -4.3997 -6.6225 21 6 5.6020 -5.3940 -7.2395 22 1 6.0991 -6.1237 -6.6175 23 6 5.8361 -5.3723 -8.5981 24 7 6.6652 -6.2397 -9.1365 25 14 4.9768 -4.1098 -9.6738 26 1 5.8110 -2.8844 -9.7616 27 1 4.7779 -4.6717 -11.0339 28 1 3.6584 -3.7697 -9.0810 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.9702 2.1169 0.0006 33 1 2.8222 -2.5834 1.9502 34 1 1.1263 -3.1692 1.9551 35 1 1.7220 -5.2396 0.8692 36 1 3.1794 -4.9668 1.8815 37 1 3.4690 -5.2473 -0.7928 38 1 4.3993 -3.9779 0.0606 39 1 4.0534 -4.5692 -2.6355 40 1 2.6181 -3.7521 -4.9269 41 1 3.9677 -2.6188 -4.6762 42 1 5.9054 -4.6384 -3.4210 43 1 6.6490 -5.1871 -4.9420 44 1 6.3212 -3.4562 -4.6851 45 1 3.0786 -6.1816 -5.2879 46 1 4.7552 -6.7782 -5.2947 47 1 4.0118 -6.2298 -3.7730 48 1 3.6627 -4.5216 -7.0626 49 1 5.0119 -3.3881 -6.8112 50 1 6.8301 -6.2242 -10.0922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358734881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:11 Heat of formation + Delta-G solvation = 25.875854 kcal Electronic energy + Delta-G solvation = -30092.924540 eV Core-core repulsion = 26155.718712 eV Total energy + Delta-G solvation = -3937.205827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.09387 -41.41269 -39.35234 -38.22360 -35.98945 -35.26583 -34.12235 -32.47740 -32.37668 -29.72378 -29.34640 -28.38735 -28.01214 -27.56184 -25.12591 -24.12720 -23.36260 -22.75252 -21.88717 -20.81422 -19.89647 -18.97776 -18.80592 -18.20452 -17.56445 -17.20613 -16.88592 -16.33166 -16.14415 -15.91169 -15.55437 -15.37250 -15.22653 -15.00213 -14.37777 -14.27514 -14.20875 -14.18107 -14.12841 -13.80431 -13.69033 -13.25683 -12.95227 -12.85776 -12.77266 -12.62558 -12.48821 -12.33486 -12.21406 -12.13927 -11.78762 -11.73809 -11.54838 -11.44350 -11.33226 -11.18508 -11.07018 -10.93291 -10.71532 -10.33126 -10.21519 -9.60449 -8.23321 -6.23212 0.79665 1.34607 1.36883 1.43667 1.47166 1.70158 1.92940 2.11510 2.38026 3.00479 3.11974 3.19368 3.53695 3.69207 3.74408 3.84411 3.88930 3.94509 4.02952 4.12848 4.17695 4.37236 4.43869 4.52585 4.60775 4.64387 4.67744 4.69052 4.71738 4.84811 4.88283 4.92656 4.96073 4.98568 5.07351 5.09458 5.16813 5.23602 5.27406 5.34278 5.34626 5.38059 5.47241 5.53957 5.66839 5.74641 5.96446 5.97247 6.37166 6.82997 6.92168 7.39408 7.49751 7.75277 8.92241 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002769 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.839152 B =10108.282082 C =10958.458100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.470 5.470 3 C 0.155 3.845 4 N -0.355 5.355 5 N -0.330 5.330 6 C 0.170 3.830 7 C 0.238 3.762 8 H 0.101 0.899 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.086 3.914 12 N -0.623 5.623 13 C 0.719 3.281 14 O -0.634 6.634 15 N -0.723 5.723 16 C 0.161 3.839 17 C -0.056 4.056 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.002 4.002 21 C -0.501 4.501 22 H 0.055 0.945 23 C 0.008 3.992 24 N -0.950 5.950 25 Si 0.932 3.068 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.253 1.253 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.257 0.743 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.407 0.593 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.017 0.983 49 H 0.008 0.992 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 7.093 28.338 34.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.160 5.160 3 C -0.134 4.134 4 N -0.193 5.193 5 N -0.169 5.169 6 C -0.100 4.100 7 C 0.130 3.870 8 H 0.119 0.881 9 C -0.149 4.149 10 C -0.152 4.152 11 C -0.035 4.035 12 N -0.360 5.360 13 C 0.421 3.579 14 O -0.515 6.515 15 N -0.379 5.379 16 C 0.037 3.963 17 C -0.057 4.057 18 C -0.179 4.179 19 C -0.177 4.177 20 C -0.040 4.040 21 C -0.539 4.539 22 H 0.073 0.927 23 C -0.189 4.189 24 N -0.591 5.591 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.176 1.176 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.273 0.727 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.035 0.965 49 H 0.027 0.973 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.651 7.695 27.697 33.221 hybrid contribution -0.802 0.583 -1.388 1.706 sum -17.454 8.279 26.309 32.640 Atomic orbital electron populations 1.22501 0.72553 1.06507 1.06116 1.46391 1.10838 1.05662 1.53141 1.27145 0.86472 0.96562 1.03183 1.74118 1.20831 1.03722 1.20677 1.74057 1.19229 1.03519 1.20143 1.25488 0.87417 0.93712 1.03422 1.19966 0.94966 0.80356 0.91705 0.88127 1.22771 1.04411 0.96312 0.91405 1.22819 1.00521 0.95721 0.96102 1.22645 0.96225 0.90357 0.94300 1.47480 1.48794 1.36119 1.03588 1.15599 0.80303 0.81424 0.80590 1.90852 1.50832 1.36597 1.73259 1.45021 1.47933 1.37185 1.07775 1.21100 0.98938 0.97907 0.78402 1.20554 0.94647 0.95197 0.95297 1.21684 0.95931 1.00932 0.99366 1.21663 1.00455 0.94968 1.00608 1.19551 0.96110 0.95671 0.92672 1.21346 1.24371 1.15569 0.92629 0.92738 1.25795 0.95819 0.97484 0.99778 1.70030 1.38237 1.38563 1.12308 0.85928 0.80428 0.79661 0.78254 1.20017 1.21160 1.17641 0.86792 0.87084 0.89195 0.72703 0.90980 0.85996 0.88427 0.87028 0.89070 0.91539 0.75524 0.92621 0.94104 0.91761 0.93152 0.94345 0.93425 0.93308 0.91429 0.96494 0.97339 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 11.01 127.77 1.41 1.87 16 2 N -0.47 -8.75 3.15 -542.07 -1.71 -10.46 16 3 C 0.16 3.24 12.74 180.12 2.30 5.53 16 4 N -0.35 -11.16 12.21 -59.99 -0.73 -11.90 16 5 N -0.33 -10.73 12.21 -50.15 -0.61 -11.34 16 6 C 0.17 4.17 5.97 137.98 0.82 4.99 16 7 C 0.24 4.33 3.23 44.60 0.14 4.47 16 8 H 0.10 1.55 6.94 -2.39 -0.02 1.54 16 9 C -0.11 -1.06 6.49 31.87 0.21 -0.86 16 10 C -0.11 -0.82 7.09 32.07 0.23 -0.59 16 11 C 0.09 1.27 6.58 86.85 0.57 1.85 16 12 N -0.62 -14.21 3.05 -810.04 -2.47 -16.68 16 13 C 0.72 22.80 8.28 179.05 1.48 24.29 16 14 O -0.63 -25.24 16.18 -3.99 -0.06 -25.31 16 15 N -0.72 -21.49 4.92 -478.53 -2.35 -23.84 16 16 C 0.16 5.72 4.56 86.38 0.39 6.11 16 17 C -0.06 -2.12 0.54 -52.18 -0.03 -2.15 16 18 C -0.12 -4.42 8.05 71.98 0.58 -3.84 16 19 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 20 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 21 C -0.50 -27.73 8.20 25.60 0.21 -27.52 16 22 H 0.05 3.22 5.92 -2.91 -0.02 3.21 16 23 C 0.01 0.44 5.47 84.66 0.46 0.91 16 24 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 25 Si 0.93 45.40 27.47 68.60 1.88 47.28 16 26 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 28 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 29 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.09 0.72 7.07 -2.39 -0.02 0.70 16 32 H 0.26 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.07 0.95 7.84 -2.39 -0.02 0.93 16 34 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 36 H 0.11 0.40 8.14 -2.39 -0.02 0.39 16 37 H 0.09 1.10 7.30 -2.38 -0.02 1.08 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.41 9.96 4.64 -92.71 -0.43 9.53 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.87 6.86 -2.39 -0.02 1.86 16 43 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 47 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 48 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 49 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 50 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -87.85 392.49 4.15 -83.70 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.46 Total: 15.86 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 9.45 Total: 11.57 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -7.58 Total: -133.11 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.31 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -87.85 4.15 -83.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358734881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.579 kcal (2) G-P(sol) polarization free energy of solvation -87.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds