Wall clock time and date at job start Tue Mar 31 2020 20:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47249 * 239.99890 * 2 1 3 5 5 C 1.50701 * 109.46986 * 59.99876 * 4 2 1 6 6 H 1.07995 * 120.00338 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99699 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99842 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47203 * 89.99978 * 9 7 5 11 11 H 1.48504 * 109.47100 * 210.00278 * 9 7 5 12 12 H 1.48500 * 109.46949 * 330.00277 * 9 7 5 13 13 C 1.53007 * 109.47377 * 119.99789 * 2 1 3 14 14 N 1.46505 * 109.46736 * 300.00092 * 13 2 1 15 15 C 1.34781 * 119.99511 * 179.97438 * 14 13 2 16 16 O 1.21584 * 119.99970 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99489 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 17 15 20 20 N 1.30837 * 126.46362 * 269.68529 * 19 18 17 21 21 N 1.28904 * 109.74045 * 179.79220 * 20 19 18 22 22 C 1.29841 * 109.47946 * 0.42563 * 21 20 19 23 23 N 1.34692 * 126.46608 * 89.99964 * 19 18 17 24 24 C 1.46262 * 128.84460 * 0.12885 * 23 19 18 25 25 C 1.53313 * 108.72883 * 162.90598 * 24 23 19 26 26 C 1.53148 * 109.58230 * 50.28876 * 25 24 23 27 27 C 1.50804 * 128.52627 * 179.86283 * 22 21 20 28 28 H 1.08997 * 109.46951 * 299.99914 * 1 2 3 29 29 H 1.08993 * 109.47310 * 60.00417 * 1 2 3 30 30 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46440 * 300.00015 * 3 2 1 33 33 H 1.09000 * 109.47127 * 59.99710 * 3 2 1 34 34 H 1.09003 * 109.47122 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47425 * 299.99588 * 4 2 1 36 36 H 0.97001 * 119.99600 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.47144 * 180.02562 * 13 2 1 38 38 H 1.08994 * 109.46765 * 60.00103 * 13 2 1 39 39 H 0.97003 * 120.00113 * 0.02562 * 14 13 2 40 40 H 0.96996 * 120.00772 * 359.97438 * 17 15 14 41 41 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 42 42 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 43 43 H 1.08998 * 109.59110 * 282.67639 * 24 23 19 44 44 H 1.08998 * 109.59440 * 43.13432 * 24 23 19 45 45 H 1.09001 * 109.45322 * 170.32019 * 25 24 23 46 46 H 1.08997 * 109.45494 * 290.25637 * 25 24 23 47 47 H 1.09001 * 109.49898 * 50.51546 * 26 25 24 48 48 H 1.09000 * 109.49937 * 170.61563 * 26 25 24 49 49 H 1.08999 * 109.73113 * 44.41038 * 27 22 21 50 50 H 1.09005 * 109.76344 * 283.74590 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5509 -3.8525 9 14 1.2479 0.3984 -5.2572 10 1 2.2253 1.4409 -5.6613 11 1 1.0837 -0.5809 -6.3614 12 1 -0.0607 1.0349 -4.9613 13 6 2.0401 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4913 3.6696 16 8 2.5752 -1.4803 3.7811 17 7 1.4272 0.1438 4.7699 18 6 1.7812 -0.3566 6.1006 19 6 1.1575 0.5254 7.1513 20 7 1.6971 1.5848 7.6976 21 7 0.8808 2.0969 8.5537 22 6 -0.2043 1.3852 8.5966 23 7 -0.0582 0.3686 7.7095 24 6 -1.0588 -0.6668 7.4528 25 6 -2.0674 -0.6738 8.6075 26 6 -2.5705 0.7507 8.8582 27 6 -1.4320 1.5946 9.4470 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6768 -1.7489 -1.2492 36 1 2.8617 -1.8823 -4.7336 37 1 3.1300 -0.7208 1.2495 38 1 1.6768 -1.7488 1.2493 39 1 0.9937 0.7579 2.3564 40 1 0.8699 0.9327 4.6810 41 1 1.4122 -1.3758 6.2154 42 1 2.8651 -0.3476 6.2157 43 1 -1.5756 -0.4519 6.5175 44 1 -0.5705 -1.6391 7.3882 45 1 -2.9095 -1.3162 8.3500 46 1 -1.5849 -1.0522 9.5086 47 1 -2.9005 1.1909 7.9172 48 1 -3.4041 0.7240 9.5600 49 1 -1.7115 2.6481 9.4367 50 1 -1.2301 1.2775 10.4702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376630731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:32 Heat of formation + Delta-G solvation = 26.913679 kcal Electronic energy + Delta-G solvation = -28788.900843 eV Core-core repulsion = 24851.740019 eV Total energy + Delta-G solvation = -3937.160824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.74915 -39.94792 -37.80606 -37.34383 -35.38426 -33.84454 -33.56079 -32.10461 -31.40543 -30.03557 -27.45101 -26.93254 -26.52285 -25.61037 -25.01202 -23.27842 -22.86957 -21.65097 -20.82498 -20.10529 -18.92269 -17.94695 -17.31611 -16.89740 -16.44163 -16.08931 -15.67527 -15.33681 -14.95738 -14.89057 -14.71606 -14.53837 -14.39522 -14.10711 -13.95105 -13.54615 -13.11969 -13.05458 -12.86165 -12.75865 -12.14018 -12.07011 -11.99630 -11.90562 -11.80884 -11.58025 -11.16860 -11.02505 -10.86343 -10.72050 -10.64597 -10.55615 -10.41065 -10.26251 -10.22429 -9.88638 -9.49097 -9.35991 -9.20945 -8.93614 -8.63328 -8.36434 -6.00485 -4.01756 1.24937 1.96353 2.35385 2.93062 3.29697 3.30456 3.37492 3.39016 3.58373 3.79586 3.84085 3.96930 4.02991 4.33903 4.45438 4.49694 4.52947 4.61434 4.73581 4.98454 4.99864 5.11308 5.17917 5.22078 5.34997 5.42506 5.43020 5.48424 5.55941 5.62971 5.72392 5.73759 6.16124 6.17799 6.19806 6.25904 6.39253 6.39828 6.56846 6.62021 6.75887 6.92126 7.05258 7.06869 7.12945 7.63631 7.75961 7.98059 8.06613 8.34350 8.39823 8.67274 9.02981 9.61297 11.10894 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.001945 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.574622 B =14393.972286 C =14695.581597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.147 3.853 14 N -0.734 5.734 15 C 0.704 3.296 16 O -0.590 6.590 17 N -0.749 5.749 18 C 0.234 3.766 19 C 0.160 3.840 20 N -0.274 5.274 21 N -0.290 5.290 22 C 0.180 3.820 23 N -0.462 5.462 24 C 0.099 3.901 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.035 4.035 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.396 0.604 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 3.035 27.324 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.023 3.977 14 N -0.389 5.389 15 C 0.404 3.596 16 O -0.468 6.468 17 N -0.408 5.408 18 C 0.107 3.893 19 C -0.107 4.107 20 N -0.115 5.115 21 N -0.130 5.130 22 C -0.087 4.087 23 N -0.153 5.153 24 C -0.023 4.023 25 C -0.174 4.174 26 C -0.166 4.166 27 C -0.074 4.074 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.229 0.771 40 H 0.230 0.770 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.106 0.894 49 H 0.120 0.880 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.303 3.026 27.555 29.936 hybrid contribution -1.675 0.127 -1.323 2.139 sum -12.978 3.153 26.231 29.435 Atomic orbital electron populations 1.21750 0.95359 1.01080 1.00115 1.20920 0.95411 0.95910 0.95038 1.21761 1.00650 0.95862 1.00157 1.19090 0.96434 0.95214 0.89400 1.21174 1.31201 1.12036 0.90511 0.92286 1.25019 0.95353 0.95090 0.99094 1.69965 1.36941 1.22978 1.23435 0.86646 0.79162 0.79407 0.83065 1.20770 1.21355 1.19988 1.21527 0.98819 0.95588 0.81720 1.45371 1.55974 1.33118 1.04425 1.15883 0.80405 0.82915 0.80380 1.90937 1.42537 1.27447 1.85890 1.45019 1.57952 1.33659 1.04125 1.19181 1.00448 0.93292 0.76401 1.24547 0.84918 0.99643 1.01616 1.74570 1.23402 1.06475 1.07080 1.74142 0.99703 1.23517 1.15676 1.24784 0.99482 0.88304 0.96138 1.46032 1.14821 1.23363 1.31099 1.22137 0.89025 0.90526 1.00652 1.21947 0.98855 0.98508 0.98060 1.21727 0.97901 0.94360 1.02574 1.20264 0.87318 1.02703 0.97115 0.95422 0.91458 0.93382 0.93270 0.91479 0.95313 0.96259 0.96300 0.93038 0.91835 0.91913 0.77099 0.77040 0.89793 0.87928 0.88784 0.88247 0.88627 0.90354 0.90815 0.89411 0.88014 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.35 0.54 -154.50 -0.08 -1.43 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.44 7.65 -34.44 -0.26 -13.70 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.15 2.56 4.57 -4.04 -0.02 2.54 16 14 N -0.73 -10.43 4.96 -65.22 -0.32 -10.75 16 15 C 0.70 10.35 8.57 -86.92 -0.74 9.60 16 16 O -0.59 -11.02 16.34 5.29 0.09 -10.93 16 17 N -0.75 -8.18 5.55 -66.41 -0.37 -8.54 16 18 C 0.23 2.37 6.07 -5.19 -0.03 2.34 16 19 C 0.16 1.67 7.44 -155.45 -1.16 0.51 16 20 N -0.27 -3.69 12.23 32.70 0.40 -3.29 16 21 N -0.29 -3.71 12.21 32.76 0.40 -3.31 16 22 C 0.18 1.61 7.75 -155.30 -1.20 0.41 16 23 N -0.46 -3.68 3.11 -110.86 -0.35 -4.03 16 24 C 0.10 0.43 6.75 -4.01 -0.03 0.41 16 25 C -0.14 -0.32 5.94 -26.49 -0.16 -0.48 16 26 C -0.13 -0.32 5.96 -26.41 -0.16 -0.47 16 27 C -0.03 -0.16 6.34 -27.59 -0.17 -0.33 16 28 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.39 4.75 6.18 -40.82 -0.25 4.49 16 40 H 0.40 3.68 8.48 -40.82 -0.35 3.33 16 41 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.36 7.85 -51.93 -0.41 -0.04 16 45 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 46 H 0.08 0.20 8.12 -51.93 -0.42 -0.22 16 47 H 0.07 0.22 8.12 -51.93 -0.42 -0.20 16 48 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -34.75 396.86 -10.24 -44.99 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.16 Total: 1.50 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.63 Total: -2.18 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.50 Total: -55.44 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.75 -10.24 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376630731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.900 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds