Wall clock time and date at job start Tue Mar 31 2020 18:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30824 * 125.96337 * 2 1 4 4 C 1.33241 * 109.82789 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.52773 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.52171 * 359.91296 * 5 4 3 7 7 C 1.53042 * 109.49481 * 239.83644 * 5 4 3 8 8 C 1.53036 * 109.53737 * 178.67939 * 7 5 4 9 9 C 1.52758 * 109.38270 * 61.23978 * 8 7 5 10 10 N 1.46925 * 109.01091 * 305.58631 * 9 8 7 11 11 C 1.34778 * 120.63274 * 233.58511 * 10 9 8 12 12 O 1.21584 * 120.00063 * 5.34669 * 11 10 9 13 13 N 1.34780 * 119.99599 * 185.34099 * 11 10 9 14 14 C 1.46499 * 119.99582 * 185.33925 * 13 11 10 15 15 C 1.52997 * 109.47120 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47651 * 59.99675 * 15 14 13 17 17 C 1.53005 * 109.47052 * 299.99758 * 15 14 13 18 18 C 1.50698 * 109.47555 * 180.02562 * 15 14 13 19 19 H 1.08006 * 119.99722 * 357.72360 * 18 15 14 20 20 C 1.37873 * 120.00555 * 177.73217 * 18 15 14 21 21 N 1.31514 * 120.00650 * 167.94830 * 20 18 15 22 22 Si 1.86807 * 119.99788 * 347.94355 * 20 18 15 23 23 H 1.48501 * 109.47088 * 274.31657 * 22 20 18 24 24 H 1.48499 * 109.46692 * 34.31515 * 22 20 18 25 25 H 1.48499 * 109.47091 * 154.31386 * 22 20 18 26 26 C 1.46933 * 118.73394 * 53.30968 * 10 9 8 27 27 N 1.30707 * 108.95016 * 0.26261 * 4 3 2 28 28 N 1.34437 * 125.95807 * 180.02562 * 2 1 3 29 29 H 0.97004 * 126.82409 * 359.97043 * 28 2 1 30 30 H 1.09000 * 109.47543 * 89.99854 * 1 2 3 31 31 H 1.08998 * 109.47576 * 209.99376 * 1 2 3 32 32 H 1.09006 * 109.47011 * 329.99856 * 1 2 3 33 33 H 1.08998 * 109.45857 * 298.70045 * 7 5 4 34 34 H 1.09001 * 109.45756 * 58.66081 * 7 5 4 35 35 H 1.09001 * 109.50017 * 181.31854 * 8 7 5 36 36 H 1.09003 * 109.49855 * 301.38387 * 8 7 5 37 37 H 1.09009 * 109.51148 * 185.70951 * 9 8 7 38 38 H 1.08993 * 109.43634 * 65.42370 * 9 8 7 39 39 H 0.96997 * 120.00440 * 5.34269 * 13 11 10 40 40 H 1.08994 * 109.47297 * 60.00417 * 14 13 11 41 41 H 1.09005 * 109.47524 * 300.00115 * 14 13 11 42 42 H 1.08994 * 109.47234 * 172.03213 * 16 15 14 43 43 H 1.09000 * 109.47057 * 292.04061 * 16 15 14 44 44 H 1.09003 * 109.46917 * 52.03481 * 16 15 14 45 45 H 1.08994 * 109.47147 * 300.00013 * 17 15 14 46 46 H 1.09001 * 109.46541 * 59.99937 * 17 15 14 47 47 H 1.09002 * 109.47437 * 179.97438 * 17 15 14 48 48 H 0.96998 * 120.00502 * 179.97438 * 21 20 18 49 49 H 1.08992 * 109.58560 * 66.43518 * 26 10 9 50 50 H 1.09001 * 109.58181 * 186.85818 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6886 -0.0006 5 6 4.7373 1.6234 -0.0002 6 1 4.3857 2.6552 -0.0010 7 6 5.5872 1.3725 -1.2479 8 6 6.7699 2.3435 -1.2653 9 6 7.6392 2.1059 -0.0319 10 7 6.7996 2.1985 1.1704 11 6 7.1330 3.0286 2.1785 12 8 8.0810 3.7804 2.0587 13 7 6.4153 3.0253 3.3193 14 6 6.7031 4.0065 4.3684 15 6 5.7533 3.7859 5.5474 16 6 5.9486 2.3736 6.1026 17 6 4.3074 3.9529 5.0757 18 6 6.0488 4.7956 6.6264 19 1 6.8593 5.4983 6.5010 20 6 5.2846 4.8223 7.7737 21 7 5.6781 5.5305 8.8096 22 14 3.6902 3.8525 7.8566 23 1 2.5854 4.6668 7.2896 24 1 3.8326 2.5982 7.0744 25 1 3.3853 3.5214 9.2718 26 6 5.5865 1.3734 1.2500 27 7 3.6194 -0.6169 -0.0066 28 7 2.2964 -1.0882 -0.0005 29 1 2.0092 -2.0148 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 5.9588 0.3479 -1.2341 34 1 4.9783 1.5258 -2.1389 35 1 7.3617 2.1801 -2.1660 36 1 6.3992 3.3686 -1.2547 37 1 8.4239 2.8613 0.0115 38 1 8.0869 1.1139 -0.0893 39 1 5.7084 2.3733 3.4458 40 1 6.5642 5.0126 3.9729 41 1 7.7330 3.8874 4.7049 42 1 5.3785 2.2637 7.0250 43 1 5.6005 1.6443 5.3711 44 1 7.0062 2.2067 6.3070 45 1 4.1681 4.9590 4.6803 46 1 4.0934 3.2229 4.2951 47 1 3.6306 3.7953 5.9155 48 1 5.1403 5.5496 9.6167 49 1 5.8634 0.3204 1.2992 50 1 5.0172 1.6456 2.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459239897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:00 Heat of formation + Delta-G solvation = 68.845252 kcal Electronic energy + Delta-G solvation = -30085.506967 eV Core-core repulsion = 26150.164432 eV Total energy + Delta-G solvation = -3935.342534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.52249 -40.23429 -37.89952 -36.58878 -33.99868 -33.55874 -32.70851 -32.37449 -31.37768 -30.87987 -28.22960 -26.41751 -26.26018 -25.22274 -24.57458 -24.29974 -22.00024 -21.21683 -20.25409 -19.33831 -19.21499 -18.29274 -17.78434 -16.25363 -16.05470 -15.80763 -15.46411 -15.20116 -14.84527 -14.71367 -14.50994 -14.13813 -13.84680 -13.73283 -13.58329 -13.31228 -13.20936 -12.95503 -12.79924 -12.68686 -12.42161 -12.21720 -12.14782 -12.02541 -11.61931 -11.34430 -11.16860 -11.04839 -10.88955 -10.39793 -10.36523 -10.32520 -10.25720 -10.12513 -10.01654 -9.86041 -9.65470 -9.07405 -8.72882 -8.63576 -8.46274 -8.22193 -6.10828 -4.08629 1.23166 2.26545 2.50120 2.87824 3.26270 3.33300 3.40357 3.49084 3.61987 4.15813 4.23574 4.38404 4.41253 4.57805 4.63537 4.82049 4.88157 4.92272 5.09376 5.12447 5.20265 5.28645 5.32839 5.42428 5.59017 5.63121 5.71248 5.78868 5.81513 5.89457 5.93637 6.06502 6.09246 6.12795 6.17002 6.38386 6.45014 6.57509 6.60684 6.67401 6.68420 6.75865 6.87760 7.03990 7.18836 7.28496 7.47733 7.76262 7.77628 8.29291 8.50331 8.93411 8.96934 9.52730 11.02345 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.003632 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.723410 B = 7706.554642 C = 9914.238566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.283 3.717 3 N -0.534 5.534 4 C 0.240 3.760 5 C -0.008 4.008 6 H 0.104 0.896 7 C -0.106 4.106 8 C -0.133 4.133 9 C 0.128 3.872 10 N -0.633 5.633 11 C 0.705 3.295 12 O -0.591 6.591 13 N -0.739 5.739 14 C 0.159 3.841 15 C 0.028 3.972 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.893 5.893 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.248 1.248 25 H -0.306 1.306 26 C 0.125 3.875 27 N -0.308 5.308 28 N -0.484 5.484 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.391 0.609 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.027 0.973 47 H 0.040 0.960 48 H 0.264 0.736 49 H 0.074 0.926 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -15.765 -22.111 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 N -0.263 5.263 4 C -0.044 4.044 5 C -0.030 4.030 6 H 0.123 0.877 7 C -0.145 4.145 8 C -0.172 4.172 9 C 0.005 3.995 10 N -0.371 5.371 11 C 0.407 3.593 12 O -0.470 6.470 13 N -0.395 5.395 14 C 0.036 3.964 15 C 0.027 3.973 16 C -0.199 4.199 17 C -0.202 4.202 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.717 3.283 23 H -0.214 1.214 24 H -0.174 1.174 25 H -0.235 1.235 26 C 0.000 4.000 27 N -0.137 5.137 28 N -0.203 5.203 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.228 0.772 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.935 -15.115 -21.961 27.816 hybrid contribution -1.919 -1.499 0.260 2.449 sum -9.854 -16.614 -21.701 29.053 Atomic orbital electron populations 1.20416 0.83576 1.05258 1.04556 1.24434 0.96694 0.82820 0.95601 1.70409 1.01355 1.29486 1.25058 1.24009 0.92970 0.89930 0.97443 1.19941 0.88709 0.97404 0.96986 0.87746 1.21527 0.96386 1.00453 0.96126 1.21865 0.96848 1.00169 0.98288 1.21349 0.93347 1.02356 0.82467 1.47215 1.26009 1.45151 1.18754 1.15900 0.82717 0.80408 0.80296 1.90885 1.30769 1.43467 1.81830 1.45681 1.38821 1.38082 1.16894 1.21382 0.99527 0.89924 0.85541 1.18736 0.90876 0.94665 0.93051 1.22310 1.01015 0.96681 0.99937 1.22325 0.98876 1.00367 0.98604 1.20733 1.17516 1.16748 0.99791 0.90430 1.24964 0.97733 0.95011 0.95013 1.69934 1.37885 1.41795 1.03398 0.87318 0.84363 0.81611 0.74968 1.21391 1.17446 1.23452 1.21513 0.85726 0.95842 0.96964 1.77984 0.96542 1.12290 1.26900 1.48016 1.04369 1.10041 1.57837 0.71491 0.88974 0.89804 0.88127 0.90951 0.91531 0.90274 0.91038 0.88514 0.91941 0.77237 0.92194 0.91972 0.92494 0.96215 0.93307 0.92674 0.95423 0.94191 0.92599 0.90734 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.00 0.38 0.07 16 2 C 0.28 2.41 8.24 -155.70 -1.28 1.13 16 3 N -0.53 -6.37 11.19 -8.16 -0.09 -6.46 16 4 C 0.24 2.82 6.65 -156.86 -1.04 1.77 16 5 C -0.01 -0.09 2.81 -91.65 -0.26 -0.35 16 6 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 7 C -0.11 -0.97 5.15 -26.69 -0.14 -1.11 16 8 C -0.13 -1.20 6.06 -26.84 -0.16 -1.37 16 9 C 0.13 1.46 6.41 -3.93 -0.03 1.43 16 10 N -0.63 -8.70 2.98 -178.76 -0.53 -9.23 16 11 C 0.71 12.61 8.29 -86.91 -0.72 11.89 16 12 O -0.59 -12.68 15.77 5.29 0.08 -12.59 16 13 N -0.74 -13.18 4.86 -65.23 -0.32 -13.49 16 14 C 0.16 3.34 4.50 -4.04 -0.02 3.33 16 15 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 16 C -0.14 -3.00 7.56 37.16 0.28 -2.71 16 17 C -0.14 -3.04 7.53 37.16 0.28 -2.76 16 18 C -0.51 -13.94 8.62 -34.44 -0.30 -14.23 16 19 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 20 C 0.08 2.12 5.36 -17.82 -0.10 2.02 16 21 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 22 Si 0.88 21.41 22.78 -169.99 -3.87 17.54 16 23 H -0.29 -6.90 7.10 56.52 0.40 -6.50 16 24 H -0.25 -5.50 4.58 56.52 0.26 -5.24 16 25 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 26 C 0.12 1.49 5.61 -3.71 -0.02 1.46 16 27 N -0.31 -3.41 12.80 32.42 0.41 -3.00 16 28 N -0.48 -3.85 7.45 32.62 0.24 -3.61 16 29 H 0.44 1.84 8.96 -182.33 -1.63 0.21 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.26 7.00 -51.92 -0.36 0.89 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.39 6.32 3.84 -40.82 -0.16 6.16 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.06 1.26 4.20 -51.93 -0.22 1.05 16 43 H 0.02 0.35 7.09 -51.93 -0.37 -0.02 16 44 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 47 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.08 1.02 5.76 -51.93 -0.30 0.72 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -35.21 380.60 -9.89 -45.10 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -9.13 Total: 5.13 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -3.20 Total: 1.10 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.49 Total: -62.03 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -3.87 Total: 17.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.21 -9.89 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459239897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.950 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds