Wall clock time and date at job start Tue Mar 31 2020 18:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30828 * 125.95822 * 2 1 4 4 C 1.33233 * 109.82813 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.52919 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.49755 * 0.07176 * 5 4 3 7 7 C 1.53051 * 109.49519 * 120.16258 * 5 4 3 8 8 C 1.53041 * 109.53455 * 181.31831 * 7 5 4 9 9 C 1.53185 * 109.31506 * 298.63675 * 8 7 5 10 10 N 1.46927 * 108.77863 * 54.63207 * 9 8 7 11 11 C 1.34784 * 120.62807 * 126.36777 * 10 9 8 12 12 O 1.21584 * 119.99490 * 174.99159 * 11 10 9 13 13 N 1.34773 * 119.99695 * 354.98982 * 11 10 9 14 14 C 1.46506 * 119.99525 * 185.06921 * 13 11 10 15 15 C 1.53002 * 109.46922 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46971 * 300.00173 * 15 14 13 17 17 C 1.53000 * 109.46982 * 60.00086 * 15 14 13 18 18 C 1.50701 * 109.47128 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99892 * 0.02562 * 18 15 14 20 20 C 1.37871 * 120.00052 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00011 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00088 * 179.97438 * 20 18 15 23 23 H 1.48509 * 109.46757 * 90.00085 * 22 20 18 24 24 H 1.48496 * 109.47372 * 210.00145 * 22 20 18 25 25 H 1.48497 * 109.47317 * 330.00705 * 22 20 18 26 26 C 1.46919 * 118.73995 * 306.39625 * 10 9 8 27 27 N 1.30715 * 108.94845 * 0.26550 * 4 3 2 28 28 N 1.34423 * 125.96017 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.82684 * 0.03222 * 28 2 1 30 30 H 1.09001 * 109.47064 * 90.00475 * 1 2 3 31 31 H 1.09002 * 109.47678 * 210.00127 * 1 2 3 32 32 H 1.08996 * 109.47313 * 330.00464 * 1 2 3 33 33 H 1.08995 * 109.45851 * 301.34193 * 7 5 4 34 34 H 1.09000 * 109.45748 * 61.29857 * 7 5 4 35 35 H 1.09001 * 109.49113 * 178.68643 * 8 7 5 36 36 H 1.09000 * 109.52140 * 58.60306 * 8 7 5 37 37 H 1.09008 * 109.58328 * 294.84818 * 9 8 7 38 38 H 1.08996 * 109.70393 * 174.49463 * 9 8 7 39 39 H 0.96998 * 120.00497 * 5.07284 * 13 11 10 40 40 H 1.09001 * 109.47265 * 300.00059 * 14 13 11 41 41 H 1.08998 * 109.46970 * 60.00712 * 14 13 11 42 42 H 1.09000 * 109.47297 * 60.00402 * 16 15 14 43 43 H 1.09002 * 109.47278 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.47504 * 299.99902 * 16 15 14 45 45 H 1.09001 * 109.47352 * 60.00107 * 17 15 14 46 46 H 1.09002 * 109.46757 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47504 * 299.99732 * 17 15 14 48 48 H 0.97005 * 120.00134 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.58948 * 293.81578 * 26 10 9 50 50 H 1.09007 * 109.70171 * 173.46043 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6888 0.0006 5 6 4.7371 1.6237 0.0002 6 1 4.3851 2.6553 0.0007 7 6 5.5872 1.3728 1.2480 8 6 6.7698 2.3440 1.2653 9 6 7.6420 2.1023 0.0294 10 7 6.7995 2.1989 -1.1704 11 6 7.1328 3.0290 -2.1785 12 8 6.4789 3.0335 -3.2036 13 7 8.1908 3.8540 -2.0503 14 6 8.4870 4.8336 -3.0986 15 6 9.7296 5.6370 -2.7095 16 6 9.4731 6.3652 -1.3886 17 6 10.9194 4.6889 -2.5464 18 6 10.0340 6.6451 -3.7875 19 1 9.4039 6.7069 -4.6624 20 6 11.1162 7.4891 -3.6563 21 7 11.8832 7.4142 -2.5906 22 14 11.4939 8.7383 -4.9929 23 1 10.7829 10.0084 -4.6985 24 1 12.9569 8.9887 -5.0372 25 1 11.0420 8.2108 -6.3054 26 6 5.5865 1.3738 -1.2500 27 7 3.6194 -0.6167 -0.0048 28 7 2.2964 -1.0880 0.0005 29 1 2.0093 -2.0146 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 4.9783 1.5261 2.1389 34 1 5.9588 0.3482 1.2342 35 1 7.3616 2.1805 2.1659 36 1 6.3995 3.3691 1.2544 37 1 8.0867 1.1086 0.0847 38 1 8.4306 2.8534 -0.0164 39 1 8.7561 3.7992 -1.2640 40 1 8.6702 4.3147 -4.0395 41 1 7.6392 5.5088 -3.2150 42 1 9.2527 5.6363 -0.6086 43 1 10.3582 6.9379 -1.1115 44 1 8.6255 7.0406 -1.5047 45 1 11.1021 4.1700 -3.4875 46 1 11.8045 5.2612 -2.2688 47 1 10.6990 3.9600 -1.7665 48 1 12.6444 8.0083 -2.4981 49 1 5.8633 0.3207 -1.2991 50 1 5.0162 1.6435 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459239902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:04 Heat of formation + Delta-G solvation = 48.720459 kcal Electronic energy + Delta-G solvation = -29462.837212 eV Core-core repulsion = 25526.622001 eV Total energy + Delta-G solvation = -3936.215211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.48111 -40.11677 -37.73568 -36.22387 -34.22836 -33.16564 -32.67937 -32.30344 -31.13949 -30.45674 -28.20519 -25.97262 -25.67810 -25.32448 -24.73349 -23.76788 -22.09697 -21.19654 -20.13670 -19.26739 -18.83491 -18.24943 -17.77924 -16.13045 -15.89491 -15.60211 -15.38983 -14.91063 -14.69685 -14.62084 -14.28720 -14.12250 -13.79537 -13.45936 -13.41294 -13.34060 -13.15747 -12.79469 -12.61170 -12.48222 -12.19519 -12.08293 -11.54486 -11.34862 -11.16532 -11.10695 -11.01157 -10.89010 -10.81928 -10.65219 -10.33805 -10.31584 -10.27296 -10.15760 -9.74943 -9.65774 -9.58076 -9.24827 -8.74504 -8.62540 -8.35999 -8.06809 -5.98049 -4.07549 1.26822 2.29992 2.54322 2.97306 3.31560 3.38344 3.42985 3.60020 3.69725 4.22722 4.32369 4.40773 4.47519 4.68361 4.72995 4.83738 4.92039 4.92611 5.11918 5.23492 5.28735 5.31383 5.37360 5.48909 5.66987 5.73699 5.77888 5.86254 5.94581 5.96838 6.09651 6.23242 6.26390 6.42794 6.55622 6.64424 6.71222 6.85793 6.87012 6.97148 7.08451 7.16081 7.31602 7.44474 7.60628 7.74117 7.81737 8.05841 8.16977 8.42377 8.48779 8.92223 9.09003 9.57901 11.03387 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.002204 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.853126 B =12700.685869 C =13171.383227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.535 5.535 4 C 0.244 3.756 5 C -0.010 4.010 6 H 0.103 0.897 7 C -0.106 4.106 8 C -0.133 4.133 9 C 0.110 3.890 10 N -0.634 5.634 11 C 0.703 3.297 12 O -0.596 6.596 13 N -0.733 5.733 14 C 0.149 3.851 15 C 0.055 3.945 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.503 4.503 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.145 3.855 27 N -0.309 5.309 28 N -0.485 5.485 29 H 0.439 0.561 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.393 0.607 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.005 0.995 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.085 0.915 47 H 0.004 0.996 48 H 0.259 0.741 49 H 0.068 0.932 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 -17.130 11.771 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.264 5.264 4 C -0.039 4.039 5 C -0.032 4.032 6 H 0.121 0.879 7 C -0.144 4.144 8 C -0.172 4.172 9 C -0.014 4.014 10 N -0.372 5.372 11 C 0.404 3.596 12 O -0.475 6.475 13 N -0.389 5.389 14 C 0.026 3.974 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C 0.020 3.980 27 N -0.138 5.138 28 N -0.204 5.204 29 H 0.284 0.716 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.231 0.769 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.104 0.896 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.104 0.896 47 H 0.023 0.977 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.238 -17.002 11.049 26.614 hybrid contribution 0.069 -0.057 -0.245 0.261 sum -17.169 -17.059 10.804 26.505 Atomic orbital electron populations 1.20401 0.83621 1.04976 1.04691 1.24426 0.96669 0.82882 0.95798 1.70400 1.01451 1.29495 1.25084 1.24020 0.92926 0.89894 0.97062 1.19997 0.88785 0.97275 0.97191 0.87889 1.21520 0.96312 1.00336 0.96278 1.21924 0.96854 1.00364 0.98046 1.21642 0.93122 1.02200 0.84424 1.47185 1.26251 1.45181 1.18585 1.15950 0.81745 0.78923 0.82944 1.90872 1.55719 1.72471 1.28444 1.45671 1.29389 1.38073 1.25767 1.21596 0.98880 0.88498 0.88436 1.18368 0.89120 0.92393 0.94649 1.21815 1.01924 0.98826 0.96117 1.21813 1.02532 0.97124 0.97217 1.20983 1.11611 1.17009 1.04552 0.92415 1.24879 0.95918 0.97140 0.95653 1.69806 1.17004 1.38422 1.27286 0.86572 0.77275 0.81655 0.82363 1.20746 1.21332 1.19918 1.21252 0.85057 0.94436 0.97223 1.78001 0.96422 1.12355 1.26979 1.48009 1.04424 1.09988 1.57937 0.71552 0.88882 0.89909 0.88280 0.91544 0.90975 0.90177 0.90853 0.91328 0.89919 0.76931 0.92905 0.93010 0.97645 0.89646 0.95435 0.95428 0.89646 0.97664 0.93070 0.91394 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.28 2.41 8.24 -155.70 -1.28 1.13 16 3 N -0.54 -6.59 11.19 -8.16 -0.09 -6.68 16 4 C 0.24 3.04 6.65 -156.86 -1.04 1.99 16 5 C -0.01 -0.12 2.81 -91.64 -0.26 -0.38 16 6 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 7 C -0.11 -1.04 5.15 -26.68 -0.14 -1.17 16 8 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 9 C 0.11 1.24 6.43 -3.71 -0.02 1.21 16 10 N -0.63 -9.34 2.97 -178.50 -0.53 -9.87 16 11 C 0.70 13.38 8.30 -86.91 -0.72 12.66 16 12 O -0.60 -13.63 15.79 5.29 0.08 -13.55 16 13 N -0.73 -13.81 4.87 -65.22 -0.32 -14.13 16 14 C 0.15 3.29 4.51 -4.04 -0.02 3.27 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 22 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.15 2.00 5.68 -3.72 -0.02 1.98 16 27 N -0.31 -3.59 12.80 32.42 0.41 -3.17 16 28 N -0.49 -3.95 7.45 32.62 0.24 -3.70 16 29 H 0.44 1.85 8.96 -182.33 -1.63 0.21 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.95 5.56 -51.93 -0.29 0.66 16 39 H 0.39 6.66 3.62 -40.82 -0.15 6.52 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 43 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 47 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 48 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 1.53 7.04 -51.92 -0.37 1.16 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -33.27 390.54 -11.19 -44.46 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -9.24 Total: 4.70 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.13 Total: 3.35 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.24 Total: -60.77 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.27 -11.19 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459239902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.182 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds