Wall clock time and date at job start Tue Mar 31 2020 18:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30828 * 125.95822 * 2 1 4 4 C 1.33233 * 109.82813 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.52919 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.49755 * 0.07176 * 5 4 3 7 7 C 1.53051 * 109.49519 * 120.16258 * 5 4 3 8 8 C 1.53041 * 109.53455 * 181.31831 * 7 5 4 9 9 C 1.53185 * 109.31506 * 298.63675 * 8 7 5 10 10 N 1.46927 * 108.77863 * 54.63207 * 9 8 7 11 11 C 1.34784 * 120.62807 * 126.36777 * 10 9 8 12 12 O 1.21584 * 119.99490 * 174.99159 * 11 10 9 13 13 N 1.34773 * 119.99695 * 354.98982 * 11 10 9 14 14 C 1.46506 * 119.99525 * 185.06921 * 13 11 10 15 15 C 1.53002 * 109.46922 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46971 * 300.00173 * 15 14 13 17 17 C 1.53000 * 109.46982 * 60.00086 * 15 14 13 18 18 C 1.50701 * 109.47128 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99892 * 0.02562 * 18 15 14 20 20 C 1.37871 * 120.00052 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00011 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00088 * 179.97438 * 20 18 15 23 23 H 1.48509 * 109.46757 * 90.00085 * 22 20 18 24 24 H 1.48496 * 109.47372 * 210.00145 * 22 20 18 25 25 H 1.48497 * 109.47317 * 330.00705 * 22 20 18 26 26 C 1.46919 * 118.73995 * 306.39625 * 10 9 8 27 27 N 1.30715 * 108.94845 * 0.26550 * 4 3 2 28 28 N 1.34423 * 125.96017 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.82684 * 0.03222 * 28 2 1 30 30 H 1.09001 * 109.47064 * 90.00475 * 1 2 3 31 31 H 1.09002 * 109.47678 * 210.00127 * 1 2 3 32 32 H 1.08996 * 109.47313 * 330.00464 * 1 2 3 33 33 H 1.08995 * 109.45851 * 301.34193 * 7 5 4 34 34 H 1.09000 * 109.45748 * 61.29857 * 7 5 4 35 35 H 1.09001 * 109.49113 * 178.68643 * 8 7 5 36 36 H 1.09000 * 109.52140 * 58.60306 * 8 7 5 37 37 H 1.09008 * 109.58328 * 294.84818 * 9 8 7 38 38 H 1.08996 * 109.70393 * 174.49463 * 9 8 7 39 39 H 0.96998 * 120.00497 * 5.07284 * 13 11 10 40 40 H 1.09001 * 109.47265 * 300.00059 * 14 13 11 41 41 H 1.08998 * 109.46970 * 60.00712 * 14 13 11 42 42 H 1.09000 * 109.47297 * 60.00402 * 16 15 14 43 43 H 1.09002 * 109.47278 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.47504 * 299.99902 * 16 15 14 45 45 H 1.09001 * 109.47352 * 60.00107 * 17 15 14 46 46 H 1.09002 * 109.46757 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47504 * 299.99732 * 17 15 14 48 48 H 0.97005 * 120.00134 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.58948 * 293.81578 * 26 10 9 50 50 H 1.09007 * 109.70171 * 173.46043 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6888 0.0006 5 6 4.7371 1.6237 0.0002 6 1 4.3851 2.6553 0.0007 7 6 5.5872 1.3728 1.2480 8 6 6.7698 2.3440 1.2653 9 6 7.6420 2.1023 0.0294 10 7 6.7995 2.1989 -1.1704 11 6 7.1328 3.0290 -2.1785 12 8 6.4789 3.0335 -3.2036 13 7 8.1908 3.8540 -2.0503 14 6 8.4870 4.8336 -3.0986 15 6 9.7296 5.6370 -2.7095 16 6 9.4731 6.3652 -1.3886 17 6 10.9194 4.6889 -2.5464 18 6 10.0340 6.6451 -3.7875 19 1 9.4039 6.7069 -4.6624 20 6 11.1162 7.4891 -3.6563 21 7 11.8832 7.4142 -2.5906 22 14 11.4939 8.7383 -4.9929 23 1 10.7829 10.0084 -4.6985 24 1 12.9569 8.9887 -5.0372 25 1 11.0420 8.2108 -6.3054 26 6 5.5865 1.3738 -1.2500 27 7 3.6194 -0.6167 -0.0048 28 7 2.2964 -1.0880 0.0005 29 1 2.0093 -2.0146 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 4.9783 1.5261 2.1389 34 1 5.9588 0.3482 1.2342 35 1 7.3616 2.1805 2.1659 36 1 6.3995 3.3691 1.2544 37 1 8.0867 1.1086 0.0847 38 1 8.4306 2.8534 -0.0164 39 1 8.7561 3.7992 -1.2640 40 1 8.6702 4.3147 -4.0395 41 1 7.6392 5.5088 -3.2150 42 1 9.2527 5.6363 -0.6086 43 1 10.3582 6.9379 -1.1115 44 1 8.6255 7.0406 -1.5047 45 1 11.1021 4.1700 -3.4875 46 1 11.8045 5.2612 -2.2688 47 1 10.6990 3.9600 -1.7665 48 1 12.6444 8.0083 -2.4981 49 1 5.8633 0.3207 -1.2991 50 1 5.0162 1.6435 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459239902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:03 Heat of formation + Delta-G solvation = 27.992463 kcal Electronic energy + Delta-G solvation = -29463.736045 eV Core-core repulsion = 25526.622001 eV Total energy + Delta-G solvation = -3937.114044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.24094 -41.47717 -39.02715 -37.94939 -35.40261 -34.69333 -33.38277 -33.32679 -32.62199 -31.66724 -28.79324 -27.56957 -27.53868 -27.11170 -25.89620 -25.02839 -22.95306 -22.03381 -21.23385 -20.62292 -20.44407 -19.31442 -18.79781 -17.80428 -17.22756 -16.72708 -16.65298 -16.64141 -15.82613 -15.59950 -15.41057 -15.18279 -15.01861 -14.81235 -14.68481 -14.43182 -14.05402 -13.95187 -13.77756 -13.65559 -13.41257 -13.17570 -13.07762 -12.80080 -12.67280 -12.57751 -12.44881 -12.22865 -12.12829 -11.99961 -11.92493 -11.76467 -11.46425 -11.31133 -11.12874 -11.10478 -11.05672 -10.68684 -10.50172 -10.37905 -10.10631 -9.46317 -8.00140 -6.15249 0.54050 1.43973 1.46395 1.53037 1.56993 1.71741 1.84377 2.15323 2.47427 2.89422 3.08208 3.23303 3.49072 3.74303 3.78894 3.92096 4.02671 4.10824 4.23235 4.41949 4.48596 4.54262 4.55732 4.69545 4.70204 4.71566 4.75012 4.78914 4.94761 5.00820 5.03542 5.06704 5.07850 5.09445 5.13713 5.21077 5.22351 5.29717 5.39283 5.40311 5.53481 5.63671 5.69618 5.69859 5.94135 6.17581 6.20289 6.23872 6.46149 6.88218 7.02214 7.06374 7.51898 7.58234 8.98882 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.002204 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.853126 B =12700.685869 C =13171.383227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.287 3.713 3 N -0.578 5.578 4 C 0.230 3.770 5 C -0.003 4.003 6 H 0.086 0.914 7 C -0.097 4.097 8 C -0.126 4.126 9 C 0.102 3.898 10 N -0.625 5.625 11 C 0.699 3.301 12 O -0.641 6.641 13 N -0.724 5.724 14 C 0.166 3.834 15 C 0.052 3.948 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.527 4.527 19 H 0.043 0.957 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.277 1.277 26 C 0.151 3.849 27 N -0.329 5.329 28 N -0.474 5.474 29 H 0.456 0.544 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.405 0.595 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.016 0.984 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.260 0.740 49 H 0.077 0.923 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 -18.663 13.701 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 N -0.309 5.309 4 C -0.054 4.054 5 C -0.025 4.025 6 H 0.104 0.896 7 C -0.135 4.135 8 C -0.164 4.164 9 C -0.020 4.020 10 N -0.362 5.362 11 C 0.401 3.599 12 O -0.523 6.523 13 N -0.381 5.381 14 C 0.042 3.958 15 C 0.051 3.949 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.565 4.565 19 H 0.061 0.939 20 C -0.172 4.172 21 N -0.536 5.536 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.208 1.208 25 H -0.203 1.203 26 C 0.026 3.974 27 N -0.158 5.158 28 N -0.194 5.194 29 H 0.305 0.695 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.244 0.756 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.907 -18.589 13.041 28.918 hybrid contribution 0.174 0.326 -0.835 0.913 sum -17.733 -18.263 12.206 28.231 Atomic orbital electron populations 1.20651 0.80149 1.06655 1.05956 1.25233 0.98273 0.82026 0.93579 1.70375 1.01877 1.31597 1.27026 1.24010 0.93191 0.90238 0.97913 1.19854 0.88967 0.96469 0.97210 0.89563 1.21474 0.96096 1.00749 0.95210 1.21906 0.96624 0.99697 0.98178 1.21982 0.93014 1.03579 0.83437 1.47209 1.26682 1.43731 1.18562 1.16094 0.81274 0.79310 0.83262 1.90840 1.57013 1.73849 1.30639 1.45361 1.29807 1.37561 1.25403 1.21158 0.97623 0.88457 0.88603 1.18369 0.89847 0.92300 0.94395 1.21650 1.00458 0.99053 0.96443 1.21652 1.01169 0.97158 0.97658 1.21240 1.11857 1.18340 1.05099 0.93862 1.25439 0.95865 0.98504 0.97367 1.69900 1.17011 1.38721 1.28012 0.85760 0.77165 0.79754 0.80111 1.20483 1.20764 1.20253 1.21206 0.84632 0.94430 0.97094 1.77880 0.98467 1.11978 1.27516 1.47939 1.03323 1.10992 1.57162 0.69474 0.87618 0.86566 0.88236 0.90741 0.90325 0.87119 0.91754 0.89092 0.89766 0.75558 0.94813 0.94710 0.94530 0.91718 0.96371 0.96437 0.91694 0.94604 0.93008 0.90479 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.29 4.52 8.24 138.23 1.14 5.66 16 3 N -0.58 -14.09 11.19 -179.73 -2.01 -16.10 16 4 C 0.23 5.65 6.65 138.63 0.92 6.58 16 5 C 0.00 -0.07 2.81 -11.46 -0.03 -0.10 16 6 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 7 C -0.10 -1.71 5.15 30.63 0.16 -1.55 16 8 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 9 C 0.10 2.05 6.43 86.36 0.56 2.61 16 10 N -0.62 -18.06 2.97 -836.93 -2.49 -20.55 16 11 C 0.70 26.83 8.30 179.05 1.49 28.31 16 12 O -0.64 -30.37 15.79 -3.98 -0.06 -30.43 16 13 N -0.72 -27.01 4.87 -478.52 -2.33 -29.34 16 14 C 0.17 7.47 4.51 86.38 0.39 7.86 16 15 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 16 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 17 C -0.12 -5.35 8.08 71.98 0.58 -4.76 16 18 C -0.53 -28.35 8.01 25.60 0.21 -28.15 16 19 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 20 C 0.03 1.49 5.15 84.65 0.44 1.93 16 21 N -0.90 -47.97 9.35 21.44 0.20 -47.77 16 22 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.15 4.20 5.68 86.36 0.49 4.69 16 27 N -0.33 -7.33 12.80 -51.33 -0.66 -7.98 16 28 N -0.47 -6.94 7.45 -50.71 -0.38 -7.32 16 29 H 0.46 2.85 8.96 -213.10 -1.91 0.94 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.69 5.56 -2.39 -0.01 1.67 16 39 H 0.40 13.00 3.62 -92.71 -0.34 12.66 16 40 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 43 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 47 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 48 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 49 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.06 2.15 7.04 -2.38 -0.02 2.13 16 Total: -1.00 -74.11 390.54 0.84 -73.28 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -1.28 Total: 21.74 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 7.82 Total: 19.29 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.66 Total: -129.06 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.06 Total: -30.43 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.11 0.84 -73.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459239902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.268 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds