Wall clock time and date at job start Tue Mar 31 2020 20:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47082 * 2 1 4 4 C 1.53001 * 109.47215 * 120.00043 * 2 1 3 5 5 H 1.08999 * 109.49447 * 178.61517 * 4 2 1 6 6 C 1.53244 * 109.49087 * 298.69517 * 4 2 1 7 7 N 1.47082 * 108.51833 * 173.79184 * 6 4 2 8 8 C 1.34772 * 120.88332 * 128.83504 * 7 6 4 9 9 O 1.21587 * 119.99929 * 354.94743 * 8 7 6 10 10 N 1.34780 * 119.99738 * 174.94484 * 8 7 6 11 11 C 1.40201 * 119.99416 * 185.03573 * 10 8 7 12 12 C 1.40400 * 125.97287 * 359.97438 * 11 10 8 13 13 C 1.35245 * 107.86259 * 180.02562 * 12 11 10 14 14 N 1.34962 * 107.86378 * 0.02562 * 13 12 11 15 15 C 1.46495 * 125.97965 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47531 * 124.99983 * 15 14 13 17 17 H 1.08007 * 119.99381 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00301 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00115 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46806 * 120.00236 * 20 18 16 23 23 H 1.48500 * 109.47584 * 240.00483 * 20 18 16 24 24 N 1.31211 * 125.96894 * 179.69569 * 11 10 8 25 25 C 1.47083 * 118.23729 * 308.81253 * 7 6 4 26 26 C 1.53242 * 108.52191 * 51.18531 * 25 7 6 27 27 N 1.46898 * 109.49316 * 58.55873 * 4 2 1 28 28 C 1.46906 * 110.99775 * 52.78465 * 27 4 2 29 29 H 1.09004 * 109.47262 * 55.89555 * 1 2 3 30 30 H 1.08993 * 109.47178 * 175.89913 * 1 2 3 31 31 H 1.09008 * 109.46762 * 295.89541 * 1 2 3 32 32 H 1.09003 * 109.47220 * 239.99923 * 2 1 3 33 33 H 1.09003 * 109.47156 * 59.99884 * 3 2 1 34 34 H 1.09003 * 109.46787 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47161 * 300.00239 * 3 2 1 36 36 H 1.08998 * 109.62843 * 293.49382 * 6 4 2 37 37 H 1.08997 * 109.62646 * 54.07996 * 6 4 2 38 38 H 0.96997 * 120.00303 * 5.03709 * 10 8 7 39 39 H 1.07991 * 126.06999 * 0.02562 * 12 11 10 40 40 H 1.08005 * 126.06815 * 180.02562 * 13 12 11 41 41 H 1.09004 * 109.47659 * 245.00326 * 15 14 13 42 42 H 1.08997 * 109.47248 * 4.99930 * 15 14 13 43 43 H 0.97003 * 120.00399 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.63044 * 291.48287 * 25 7 6 45 45 H 1.08997 * 109.62983 * 170.89545 * 25 7 6 46 46 H 1.08994 * 109.49440 * 186.21586 * 26 25 7 47 47 H 1.08994 * 109.51426 * 66.13955 * 26 25 7 48 48 H 1.09001 * 109.47095 * 63.65171 * 28 27 4 49 49 H 1.09000 * 109.46852 * 183.64492 * 28 27 4 50 50 H 1.08996 * 109.47145 * 303.64910 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1297 -0.7430 1.2373 6 6 1.5565 0.0195 2.5006 7 7 1.9295 -0.7700 3.6842 8 6 2.5881 -0.2031 4.7144 9 8 2.9626 0.9509 4.6353 10 7 2.8313 -0.9156 5.8323 11 6 3.4216 -0.2966 6.9433 12 6 3.8086 1.0503 7.0280 13 6 4.3356 1.2540 8.2568 14 7 4.2868 0.0838 8.9274 15 6 4.7553 -0.1437 10.2966 16 6 3.6357 -0.7259 11.1205 17 1 2.6717 -0.9085 10.6691 18 6 3.8424 -1.0262 12.4501 19 7 5.0164 -0.8043 12.9996 20 14 2.4544 -1.7472 13.4715 21 1 1.2438 -1.8985 12.6248 22 1 2.8625 -3.0763 13.9931 23 1 2.1536 -0.8404 14.6083 24 7 3.7042 -0.8738 8.0872 25 6 1.5643 -2.1944 3.7138 26 6 2.0474 -2.8480 2.4147 27 7 1.5224 -2.0959 1.2673 28 6 1.8187 -2.7866 0.0050 29 1 -0.3634 0.5762 -0.8509 30 1 -0.3633 -1.0250 -0.0735 31 1 -0.3633 0.4489 0.9246 32 1 1.8934 -0.5139 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.0292 1.0004 2.5510 37 1 0.4732 0.1334 2.4629 38 1 2.5981 -1.8564 5.8683 39 1 3.7040 1.7921 6.2501 40 1 4.7262 2.1875 8.6344 41 1 5.5952 -0.8383 10.2827 42 1 5.0738 0.8026 10.7336 43 1 5.1618 -1.0153 13.9352 44 1 0.4816 -2.2933 3.7927 45 1 2.0420 -2.6773 4.5663 46 1 1.6894 -3.8765 2.3700 47 1 3.1370 -2.8405 2.3867 48 1 2.8983 -2.8787 -0.1141 49 1 1.3688 -3.7793 0.0197 50 1 1.4089 -2.2142 -0.8272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486954782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:44 Heat of formation + Delta-G solvation = 74.921715 kcal Electronic energy + Delta-G solvation = -29397.421732 eV Core-core repulsion = 25462.342693 eV Total energy + Delta-G solvation = -3935.079039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99671 -40.19255 -38.87449 -35.76005 -34.79342 -34.53010 -33.29652 -30.96218 -30.19834 -29.28285 -28.69943 -27.40487 -26.59148 -24.82826 -24.63401 -23.04520 -22.22136 -21.16789 -20.33114 -19.35234 -19.04926 -18.05385 -16.78098 -16.54438 -16.29764 -15.73898 -15.67824 -15.37969 -15.20371 -14.93938 -14.53319 -14.28114 -14.03739 -14.01000 -13.65978 -13.39587 -13.09101 -12.87179 -12.74537 -12.44974 -12.33014 -12.22716 -12.20319 -11.96898 -11.81875 -11.70848 -11.38063 -11.15207 -11.05363 -10.94981 -10.86453 -10.76178 -10.39947 -10.24760 -10.04301 -9.63106 -9.45961 -8.99655 -8.63081 -8.58276 -8.07141 -7.38258 -6.22996 -4.27803 2.31613 2.67666 3.11278 3.23031 3.30496 3.35567 3.40782 3.47100 3.85220 4.08877 4.33282 4.36388 4.43060 4.54264 4.75108 4.77153 4.83855 4.93887 5.02952 5.10728 5.12240 5.16207 5.25169 5.33115 5.39491 5.42127 5.49653 5.52315 5.58537 5.62579 5.66567 5.77681 5.80378 5.83705 6.00222 6.10213 6.13394 6.35306 6.54481 6.56746 6.65342 6.71135 6.85424 7.00103 7.11097 7.51619 7.71086 7.81451 7.96137 8.09055 8.58376 8.68705 8.83016 9.37780 10.85722 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002222 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.664544 B =12600.388377 C =13239.209920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.152 4.152 4 C 0.075 3.925 5 H 0.047 0.953 6 C 0.138 3.862 7 N -0.630 5.630 8 C 0.718 3.282 9 O -0.566 6.566 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.321 5.321 15 C 0.258 3.742 16 C -0.526 4.526 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.308 5.308 25 C 0.113 3.887 26 C 0.041 3.959 27 N -0.534 5.534 28 C 0.020 3.980 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.405 0.595 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.024 0.976 49 H 0.068 0.932 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 -1.490 -27.514 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.210 4.210 4 C -0.035 4.035 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.368 5.368 8 C 0.418 3.582 9 O -0.442 6.442 10 N -0.296 5.296 11 C 0.021 3.979 12 C -0.317 4.317 13 C -0.099 4.099 14 N -0.103 5.103 15 C 0.141 3.859 16 C -0.565 4.565 17 H 0.087 0.913 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.139 5.139 25 C -0.011 4.011 26 C -0.088 4.088 27 N -0.259 5.259 28 C -0.128 4.128 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.242 0.758 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.058 0.942 48 H 0.043 0.957 49 H 0.087 0.913 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.379 -1.735 -26.529 27.591 hybrid contribution 0.212 -0.389 0.212 0.491 sum -7.166 -2.125 -26.318 27.359 Atomic orbital electron populations 1.21821 0.94167 1.02430 1.01530 1.21188 0.97083 0.96045 0.96540 1.21919 1.01189 0.95510 1.02406 1.22089 0.97267 0.88594 0.95525 0.93533 1.21772 1.00570 0.95105 0.81075 1.47273 1.60650 1.10444 1.18481 1.15510 0.78742 0.84409 0.79489 1.90849 1.56263 1.16221 1.80822 1.41573 1.63665 1.13258 1.11081 1.18802 0.99537 0.92127 0.87406 1.21489 1.14667 0.96175 0.99389 1.22547 1.02119 0.92210 0.93019 1.49048 1.43289 1.04834 1.13095 1.19732 0.96086 0.98927 0.71172 1.21302 0.97986 1.42658 0.94527 0.91253 1.24950 0.96270 0.95385 0.97560 1.69927 1.22119 1.47880 1.13479 0.86279 0.81808 0.78714 0.79736 1.19564 1.20725 1.20772 1.77316 1.21275 1.15393 0.99930 1.21775 1.01377 0.80679 0.97275 1.22487 0.97987 0.97881 0.90422 1.61950 1.59333 1.01887 1.02682 1.22457 0.99014 0.99319 0.92012 0.93242 0.91656 0.92290 0.90865 0.91873 0.92610 0.92318 0.88117 0.90482 0.75809 0.82266 0.81535 0.93779 0.92552 0.92408 0.90112 0.89950 0.89234 0.94178 0.95717 0.91285 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.63 37.16 0.32 -0.58 16 2 C -0.09 -0.59 2.20 -90.62 -0.20 -0.79 16 3 C -0.15 -1.02 8.82 37.16 0.33 -0.70 16 4 C 0.07 0.62 1.84 -67.59 -0.12 0.49 16 5 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 6 C 0.14 1.39 5.12 -3.60 -0.02 1.38 16 7 N -0.63 -7.34 3.01 -178.18 -0.54 -7.88 16 8 C 0.72 11.26 8.27 -86.92 -0.72 10.54 16 9 O -0.57 -10.53 12.95 5.29 0.07 -10.46 16 10 N -0.64 -10.58 5.36 -15.51 -0.08 -10.66 16 11 C 0.28 5.70 8.11 -154.36 -1.25 4.45 16 12 C -0.29 -5.85 9.61 -39.83 -0.38 -6.23 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 14 N -0.32 -7.58 3.67 -62.56 -0.23 -7.81 16 15 C 0.26 6.63 6.26 -5.20 -0.03 6.60 16 16 C -0.53 -14.74 9.23 -34.44 -0.32 -15.06 16 17 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 20 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 25 C 0.11 0.98 6.54 -3.60 -0.02 0.95 16 26 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 27 N -0.53 -3.99 4.02 -234.58 -0.94 -4.94 16 28 C 0.02 0.12 8.87 60.07 0.53 0.65 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.43 7.13 -51.93 -0.37 0.06 16 31 H 0.06 0.41 6.14 -51.92 -0.32 0.09 16 32 H 0.07 0.45 6.33 -51.93 -0.33 0.12 16 33 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 1.16 5.69 -51.93 -0.30 0.87 16 37 H 0.08 0.73 6.11 -51.93 -0.32 0.41 16 38 H 0.40 5.54 6.36 -40.82 -0.26 5.28 16 39 H 0.16 3.20 5.93 -52.49 -0.31 2.89 16 40 H 0.17 2.78 8.06 -52.48 -0.42 2.36 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.66 5.74 -51.93 -0.30 0.36 16 46 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 49 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 50 H 0.08 0.40 5.58 -51.93 -0.29 0.11 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -32.66 386.76 -9.74 -42.39 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.74 Total: 4.21 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.20 Total: 4.43 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.67 Total: -62.84 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.66 -9.74 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486954782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.315 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds